Wall clock time and date at job start Mon Mar 30 2020 01:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99548 * 2 1 4 4 O 1.42905 * 109.46944 * 135.00211 * 3 2 1 5 5 C 1.35897 * 116.99869 * 180.02562 * 4 3 2 6 6 C 1.38738 * 120.05227 * 180.02562 * 5 4 3 7 7 C 1.38141 * 119.94391 * 180.02562 * 6 5 4 8 8 C 1.38267 * 120.05384 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.94399 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47064 * 89.99908 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46835 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00280 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99788 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99743 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47061 * 60.00295 * 18 16 14 20 20 H 1.48505 * 109.46988 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47116 * 300.00069 * 18 16 14 22 22 C 1.38270 * 120.11265 * 0.25255 * 8 7 6 23 23 C 1.38141 * 120.05541 * 359.45293 * 22 8 7 24 24 H 1.07991 * 120.00481 * 359.97438 * 1 2 3 25 25 H 1.08004 * 119.99551 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00455 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47035 * 15.00861 * 3 2 1 28 28 H 1.08994 * 109.47386 * 255.00248 * 3 2 1 29 29 H 1.07996 * 120.02821 * 359.97438 * 6 5 4 30 30 H 1.07993 * 119.97516 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47152 * 330.00001 * 9 8 7 32 32 H 1.09001 * 109.46980 * 210.00101 * 9 8 7 33 33 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 34 34 H 1.09001 * 109.47487 * 300.00114 * 13 12 10 35 35 H 1.09002 * 109.47182 * 60.00342 * 13 12 10 36 36 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 37 37 H 1.07999 * 119.97019 * 179.70188 * 22 8 7 38 38 H 1.07998 * 120.03323 * 180.24999 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9090 2.3454 1.0790 6 6 4.9598 2.3525 1.9848 7 6 5.7532 3.4761 2.1117 8 6 5.5005 4.5934 1.3373 9 6 6.3673 5.8181 1.4782 10 6 7.5264 5.7261 0.5195 11 8 7.6374 4.7613 -0.2069 12 7 8.4391 6.7166 0.4688 13 6 9.5656 6.6274 -0.4636 14 6 10.4324 7.8521 -0.3226 15 1 10.1707 8.6198 0.3905 16 6 11.5597 7.9924 -1.1040 17 7 11.8782 7.0578 -1.9727 18 14 12.6338 9.5108 -0.9297 19 1 13.1482 9.5963 0.4608 20 1 13.7758 9.4203 -1.8747 21 1 11.8317 10.7223 -1.2362 22 6 4.4502 4.5909 0.4380 23 6 3.6576 3.4676 0.3029 24 1 -0.5400 0.9352 0.0004 25 1 -0.5399 -0.9354 -0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3854 2.1161 0.2661 28 1 2.4754 1.4869 -0.9926 29 1 5.1569 1.4805 2.5907 30 1 6.5716 3.4820 2.8163 31 1 6.7442 5.8810 2.4991 32 1 5.7789 6.7075 1.2527 33 1 8.3501 7.4883 1.0495 34 1 10.1542 5.7381 -0.2382 35 1 9.1883 6.5644 -1.4843 36 1 12.6715 7.1564 -2.5221 37 1 4.2519 5.4665 -0.1623 38 1 2.8399 3.4646 -0.4026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451248407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:47 Heat of formation + Delta-G solvation = -39.549410 kcal Electronic energy + Delta-G solvation = -19612.299532 eV Core-core repulsion = 16420.277677 eV Total energy + Delta-G solvation = -3192.021854 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.24536 -38.91775 -37.45668 -34.45426 -34.11674 -32.37808 -31.80332 -30.97607 -28.09085 -26.99694 -25.87503 -22.82320 -22.64535 -21.24715 -20.26078 -19.58556 -18.25840 -17.07706 -16.58139 -16.01407 -15.72331 -15.52976 -15.00338 -14.80725 -14.46909 -14.26142 -13.87320 -13.58989 -13.37250 -12.95373 -12.85113 -12.43938 -12.17474 -11.93892 -11.55513 -11.49204 -11.34026 -11.11992 -10.96952 -10.86067 -10.75686 -10.30644 -9.87732 -9.40233 -9.05543 -8.90710 -8.72220 -8.00578 -7.85477 -6.15782 -4.22930 1.43433 1.48608 1.69403 3.20734 3.25408 3.30186 3.31706 3.42031 3.75216 4.24286 4.45502 4.47686 4.65647 4.83336 4.88502 4.91950 5.00669 5.08217 5.19939 5.32348 5.43004 5.44605 5.57799 5.67824 5.72173 5.80195 6.09823 6.12208 6.20854 6.31437 6.40082 6.72962 6.81234 7.32492 7.38344 7.46614 7.53483 7.67932 7.98325 8.65363 8.79625 9.14247 9.43854 10.94340 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.047726 B = 0.002600 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.543929 B =10765.565260 C =10951.070706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.153 4.153 3 C 0.086 3.914 4 O -0.314 6.314 5 C 0.120 3.880 6 C -0.149 4.149 7 C -0.066 4.066 8 C -0.089 4.089 9 C -0.102 4.102 10 C 0.497 3.503 11 O -0.548 6.548 12 N -0.715 5.715 13 C 0.250 3.750 14 C -0.544 4.544 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.066 4.066 23 C -0.207 4.207 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.120 0.880 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.390 0.610 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.266 0.734 37 H 0.123 0.877 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.614 -7.872 7.508 23.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.171 4.171 3 C 0.011 3.989 4 O -0.229 6.229 5 C 0.076 3.924 6 C -0.168 4.168 7 C -0.084 4.084 8 C -0.090 4.090 9 C -0.143 4.143 10 C 0.282 3.718 11 O -0.427 6.427 12 N -0.364 5.364 13 C 0.129 3.871 14 C -0.582 4.582 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.084 4.084 23 C -0.226 4.226 24 H 0.117 0.883 25 H 0.125 0.875 26 H 0.138 0.862 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.223 0.777 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.141 0.859 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.350 -8.795 6.911 23.222 hybrid contribution 0.587 1.311 0.005 1.436 sum -19.764 -7.485 6.915 22.236 Atomic orbital electron populations 1.23870 0.95414 1.02509 0.99426 1.22703 0.95651 0.97923 1.00789 1.21801 0.87985 0.96587 0.92530 1.86053 1.42209 1.36052 1.58558 1.18932 0.91787 0.85841 0.95870 1.20329 0.95880 0.99728 1.00858 1.20806 0.97557 0.91663 0.98389 1.19271 0.96277 0.95554 0.97897 1.20684 0.95610 0.97195 1.00765 1.20394 0.83609 0.83535 0.84291 1.90682 1.76256 1.32277 1.43452 1.46473 1.26866 1.21382 1.41661 1.19080 0.82384 0.97422 0.88178 1.21201 1.09367 1.05052 1.22612 0.91937 1.24964 0.97436 0.96858 0.94821 1.69965 1.26177 1.33358 1.22789 0.86470 0.79746 0.82603 0.78047 1.20066 1.21083 1.20073 1.20771 0.93871 0.97617 0.96173 1.21118 1.03750 0.94269 1.03418 0.88258 0.87494 0.86245 0.91556 0.90944 0.85384 0.85423 0.88500 0.88583 0.77738 0.95620 0.95643 0.92395 0.85905 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 14.31 29.01 0.42 -0.68 16 2 C -0.15 -1.21 9.89 -36.03 -0.36 -1.57 16 3 C 0.09 0.80 5.15 36.01 0.19 0.99 16 4 O -0.31 -3.95 10.12 -19.42 -0.20 -4.14 16 5 C 0.12 1.63 6.69 -39.21 -0.26 1.37 16 6 C -0.15 -2.02 9.99 -39.43 -0.39 -2.42 16 7 C -0.07 -0.92 9.69 -39.61 -0.38 -1.31 16 8 C -0.09 -1.30 4.37 -104.60 -0.46 -1.76 16 9 C -0.10 -1.42 5.83 -29.03 -0.17 -1.59 16 10 C 0.50 9.88 7.82 -10.98 -0.09 9.79 16 11 O -0.55 -13.41 16.03 5.56 0.09 -13.32 16 12 N -0.72 -14.98 5.55 -61.47 -0.34 -15.32 16 13 C 0.25 6.68 5.43 -5.19 -0.03 6.65 16 14 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 15 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 18 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 C -0.07 -0.92 9.69 -39.60 -0.38 -1.30 16 23 C -0.21 -2.67 9.04 -39.43 -0.36 -3.03 16 24 H 0.10 0.53 7.90 -52.49 -0.41 0.12 16 25 H 0.11 0.52 8.06 -52.48 -0.42 0.09 16 26 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 27 H 0.07 0.53 7.38 -51.93 -0.38 0.15 16 28 H 0.07 0.65 7.67 -51.93 -0.40 0.25 16 29 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 32 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 33 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.12 1.29 6.30 -52.49 -0.33 0.96 16 LS Contribution 334.70 15.07 5.04 5.04 Total: -1.00 -33.72 334.70 -7.58 -41.31 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.20 Total: 4.43 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -2.69 Total: -8.32 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.40 Total: -40.85 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.11 Total: -17.46 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.72 -7.58 -41.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451248407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.757 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds