Wall clock time and date at job start Mon Mar 30 2020 01:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99548 * 2 1 4 4 O 1.42905 * 109.46944 * 135.00211 * 3 2 1 5 5 C 1.35897 * 116.99869 * 180.02562 * 4 3 2 6 6 C 1.38738 * 120.05227 * 180.02562 * 5 4 3 7 7 C 1.38141 * 119.94391 * 180.02562 * 6 5 4 8 8 C 1.38267 * 120.05384 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.94399 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47064 * 89.99908 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46835 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00280 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99788 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99743 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47061 * 60.00295 * 18 16 14 20 20 H 1.48505 * 109.46988 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47116 * 300.00069 * 18 16 14 22 22 C 1.38270 * 120.11265 * 0.25255 * 8 7 6 23 23 C 1.38141 * 120.05541 * 359.45293 * 22 8 7 24 24 H 1.07991 * 120.00481 * 359.97438 * 1 2 3 25 25 H 1.08004 * 119.99551 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00455 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47035 * 15.00861 * 3 2 1 28 28 H 1.08994 * 109.47386 * 255.00248 * 3 2 1 29 29 H 1.07996 * 120.02821 * 359.97438 * 6 5 4 30 30 H 1.07993 * 119.97516 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47152 * 330.00001 * 9 8 7 32 32 H 1.09001 * 109.46980 * 210.00101 * 9 8 7 33 33 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 34 34 H 1.09001 * 109.47487 * 300.00114 * 13 12 10 35 35 H 1.09002 * 109.47182 * 60.00342 * 13 12 10 36 36 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 37 37 H 1.07999 * 119.97019 * 179.70188 * 22 8 7 38 38 H 1.07998 * 120.03323 * 180.24999 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9090 2.3454 1.0790 6 6 4.9598 2.3525 1.9848 7 6 5.7532 3.4761 2.1117 8 6 5.5005 4.5934 1.3373 9 6 6.3673 5.8181 1.4782 10 6 7.5264 5.7261 0.5195 11 8 7.6374 4.7613 -0.2069 12 7 8.4391 6.7166 0.4688 13 6 9.5656 6.6274 -0.4636 14 6 10.4324 7.8521 -0.3226 15 1 10.1707 8.6198 0.3905 16 6 11.5597 7.9924 -1.1040 17 7 11.8782 7.0578 -1.9727 18 14 12.6338 9.5108 -0.9297 19 1 13.1482 9.5963 0.4608 20 1 13.7758 9.4203 -1.8747 21 1 11.8317 10.7223 -1.2362 22 6 4.4502 4.5909 0.4380 23 6 3.6576 3.4676 0.3029 24 1 -0.5400 0.9352 0.0004 25 1 -0.5399 -0.9354 -0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3854 2.1161 0.2661 28 1 2.4754 1.4869 -0.9926 29 1 5.1569 1.4805 2.5907 30 1 6.5716 3.4820 2.8163 31 1 6.7442 5.8810 2.4991 32 1 5.7789 6.7075 1.2527 33 1 8.3501 7.4883 1.0495 34 1 10.1542 5.7381 -0.2382 35 1 9.1883 6.5644 -1.4843 36 1 12.6715 7.1564 -2.5221 37 1 4.2519 5.4665 -0.1623 38 1 2.8399 3.4646 -0.4026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451248407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:46 Heat of formation + Delta-G solvation = -61.753204 kcal Electronic energy + Delta-G solvation = -19613.262360 eV Core-core repulsion = 16420.277677 eV Total energy + Delta-G solvation = -3192.984683 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.27001 -40.39790 -38.55035 -36.09868 -35.07519 -34.33864 -32.98991 -31.97909 -29.71726 -28.16560 -27.03146 -24.62886 -23.73110 -22.46256 -21.23379 -20.85769 -19.20604 -18.89368 -17.43951 -17.42867 -17.16656 -16.89174 -16.43758 -16.17634 -15.73627 -15.41382 -15.15391 -14.63292 -14.44518 -14.35679 -13.99551 -13.95692 -13.64460 -13.35041 -12.98665 -12.79097 -12.62679 -12.48989 -12.22159 -12.11422 -12.04783 -11.68772 -11.49950 -10.78456 -10.75473 -10.44913 -9.92956 -9.79003 -9.04870 -8.28266 -6.45186 0.40871 0.43141 1.12473 1.43543 1.47790 1.55943 1.83890 2.33252 2.39431 2.56643 2.97614 3.06276 3.75987 3.80055 3.92609 3.96857 4.06607 4.24766 4.25356 4.35457 4.43750 4.50754 4.61641 4.71927 4.78758 4.95991 5.09693 5.13403 5.25446 5.30081 5.37215 5.50846 5.59683 5.64394 5.67774 5.72884 5.83717 5.86853 6.44430 6.66509 6.96762 7.24587 7.56255 8.83644 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.047726 B = 0.002600 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.543929 B =10765.565260 C =10951.070706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.178 4.178 3 C 0.080 3.920 4 O -0.327 6.327 5 C 0.113 3.887 6 C -0.164 4.164 7 C -0.076 4.076 8 C -0.112 4.112 9 C -0.085 4.085 10 C 0.495 3.505 11 O -0.600 6.600 12 N -0.709 5.709 13 C 0.267 3.733 14 C -0.556 4.556 15 H 0.086 0.914 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.986 3.014 19 H -0.261 1.261 20 H -0.287 1.287 21 H -0.261 1.261 22 C -0.078 4.078 23 C -0.212 4.212 24 H 0.110 0.890 25 H 0.123 0.877 26 H 0.116 0.884 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.410 0.590 34 H -0.016 1.016 35 H -0.015 1.015 36 H 0.268 0.732 37 H 0.136 0.864 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.967 -6.263 8.830 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.196 4.196 3 C 0.006 3.994 4 O -0.242 6.242 5 C 0.067 3.933 6 C -0.183 4.183 7 C -0.094 4.094 8 C -0.113 4.113 9 C -0.124 4.124 10 C 0.283 3.717 11 O -0.481 6.481 12 N -0.360 5.360 13 C 0.144 3.856 14 C -0.594 4.594 15 H 0.104 0.896 16 C -0.198 4.198 17 N -0.571 5.571 18 Si 0.809 3.191 19 H -0.186 1.186 20 H -0.212 1.212 21 H -0.186 1.186 22 C -0.096 4.096 23 C -0.230 4.230 24 H 0.129 0.871 25 H 0.141 0.859 26 H 0.134 0.866 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.157 0.843 30 H 0.158 0.842 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.246 0.754 34 H 0.002 0.998 35 H 0.003 0.997 36 H 0.077 0.923 37 H 0.154 0.846 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.748 -7.167 8.276 24.348 hybrid contribution 0.879 0.682 -0.434 1.194 sum -20.869 -6.485 7.842 23.218 Atomic orbital electron populations 1.24122 0.94790 1.03852 0.96519 1.22685 0.96299 0.97206 1.03459 1.22032 0.87511 0.97994 0.91905 1.86044 1.42885 1.35811 1.59461 1.19138 0.91927 0.86347 0.95839 1.20577 0.96141 1.00199 1.01337 1.21049 0.97911 0.91704 0.98733 1.19464 0.96955 0.96087 0.98763 1.20658 0.93016 0.98425 1.00331 1.21495 0.84197 0.81899 0.84145 1.90659 1.77514 1.34200 1.45744 1.46213 1.25802 1.22824 1.41139 1.18500 0.83672 0.96098 0.87379 1.21618 1.09451 1.05347 1.22984 0.89627 1.26105 0.99131 1.00442 0.94151 1.70139 1.26961 1.35977 1.23999 0.85192 0.77350 0.78110 0.78466 1.18597 1.21239 1.18561 1.21060 0.93927 0.98452 0.96117 1.21385 1.04244 0.93799 1.03581 0.87142 0.85871 0.86586 0.90173 0.90961 0.84308 0.84243 0.85272 0.85294 0.75434 0.99769 0.99744 0.92299 0.84595 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 14.31 67.78 0.97 -0.67 16 2 C -0.18 -2.66 9.89 25.64 0.25 -2.41 16 3 C 0.08 1.42 5.15 71.24 0.37 1.79 16 4 O -0.33 -8.11 10.12 -92.39 -0.93 -9.05 16 5 C 0.11 3.01 6.69 22.51 0.15 3.16 16 6 C -0.16 -4.41 9.99 22.37 0.22 -4.18 16 7 C -0.08 -2.07 9.69 22.25 0.22 -1.85 16 8 C -0.11 -3.13 4.37 -19.85 -0.09 -3.22 16 9 C -0.09 -2.17 5.83 29.10 0.17 -2.00 16 10 C 0.49 19.53 7.82 87.66 0.69 20.21 16 11 O -0.60 -30.19 16.03 -3.03 -0.05 -30.24 16 12 N -0.71 -29.60 5.55 -466.78 -2.59 -32.19 16 13 C 0.27 14.75 5.43 85.63 0.46 15.22 16 14 C -0.56 -30.28 9.28 25.60 0.24 -30.05 16 15 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 16 C 0.00 0.06 5.46 84.66 0.46 0.53 16 17 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 18 Si 0.99 42.29 29.54 68.60 2.03 44.32 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 20 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 22 C -0.08 -2.06 9.69 22.25 0.22 -1.84 16 23 C -0.21 -5.27 9.04 22.37 0.20 -5.07 16 24 H 0.11 0.90 7.90 -2.92 -0.02 0.88 16 25 H 0.12 0.89 8.06 -2.91 -0.02 0.86 16 26 H 0.12 1.76 8.06 -2.91 -0.02 1.73 16 27 H 0.08 1.17 7.38 -2.39 -0.02 1.15 16 28 H 0.07 1.25 7.67 -2.39 -0.02 1.23 16 29 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 30 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 31 H 0.13 2.50 8.08 -2.39 -0.02 2.48 16 32 H 0.13 2.48 8.08 -2.39 -0.02 2.46 16 33 H 0.41 13.72 8.32 -92.71 -0.77 12.95 16 34 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 35 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 36 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 37 H 0.14 3.12 8.06 -2.91 -0.02 3.09 16 38 H 0.15 2.83 6.30 -2.91 -0.02 2.81 16 Total: -1.00 -76.02 334.70 3.55 -72.46 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.28 Total: 21.54 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 4.53 Total: -10.37 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -2.30 Total: -88.66 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.98 Total: -39.28 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -76.02 3.55 -72.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451248407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.709 kcal (2) G-P(sol) polarization free energy of solvation -76.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds