Wall clock time and date at job start Mon Mar 30 2020 02:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 115.55085 * 2 1 4 4 C 1.53002 * 117.50534 * 214.28693 * 2 1 3 5 5 C 1.52998 * 60.00047 * 252.51210 * 4 2 1 6 6 H 1.09009 * 117.51237 * 252.51542 * 5 4 2 7 7 C 1.50699 * 117.50004 * 107.49269 * 5 4 2 8 8 C 1.35179 * 125.47612 * 171.37811 * 7 5 4 9 9 C 1.40297 * 107.21207 * 179.76208 * 8 7 5 10 10 C 1.38041 * 106.52225 * 0.40500 * 9 8 7 11 11 C 1.41517 * 126.10942 * 179.85358 * 10 9 8 12 12 C 1.35787 * 119.99603 * 359.69394 * 11 10 9 13 13 C 1.41334 * 119.99729 * 179.97438 * 12 11 10 14 14 O 1.21841 * 120.00294 * 359.97438 * 13 12 11 15 15 N 1.34787 * 120.00091 * 179.97438 * 13 12 11 16 16 C 1.46495 * 119.99618 * 0.02562 * 15 13 12 17 17 C 1.36743 * 119.99947 * 179.97438 * 15 13 12 18 18 H 1.07999 * 119.99668 * 32.49310 * 17 15 13 19 19 C 1.39069 * 119.99916 * 212.48293 * 17 15 13 20 20 N 1.31361 * 119.99770 * 29.35042 * 19 17 15 21 21 Si 1.86793 * 120.00051 * 209.34454 * 19 17 15 22 22 H 1.48501 * 109.47253 * 90.00433 * 21 19 17 23 23 H 1.48505 * 109.47225 * 210.00290 * 21 19 17 24 24 H 1.48504 * 109.47445 * 330.00337 * 21 19 17 25 25 O 1.34034 * 125.47760 * 351.39289 * 7 5 4 26 26 H 1.08999 * 109.47166 * 274.32624 * 1 2 3 27 27 H 1.08996 * 109.47074 * 34.33631 * 1 2 3 28 28 H 1.09007 * 109.46762 * 154.33851 * 1 2 3 29 29 H 1.09000 * 117.49907 * 145.01616 * 4 2 1 30 30 H 1.09005 * 117.49332 * 0.02562 * 4 2 1 31 31 H 1.07999 * 126.39845 * 0.02562 * 8 7 5 32 32 H 1.07993 * 126.73821 * 180.29957 * 9 8 7 33 33 H 1.07995 * 120.00035 * 179.69236 * 11 10 9 34 34 H 1.08004 * 120.00659 * 359.97438 * 12 11 10 35 35 H 1.09005 * 109.47350 * 275.11098 * 16 15 13 36 36 H 1.09005 * 109.47835 * 35.11396 * 16 15 13 37 37 H 1.09005 * 109.47292 * 155.11262 * 16 15 13 38 38 H 0.96993 * 120.00348 * 5.89041 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2366 -1.1213 -0.7645 5 6 2.2364 -1.1206 0.7655 6 1 3.1714 -0.8745 1.2690 7 6 1.3721 -2.1401 1.4617 8 6 1.3729 -2.3937 2.7894 9 6 0.4248 -3.4018 3.0201 10 6 -0.1118 -3.7250 1.7900 11 6 -1.1079 -4.6997 1.5447 12 6 -1.6194 -5.4218 2.5747 13 6 -2.6147 -6.3949 2.3298 14 8 -3.0141 -6.5856 1.1946 15 7 -3.1221 -7.1120 3.3521 16 6 -2.6423 -6.8823 4.7170 17 6 -4.0855 -8.0531 3.1152 18 1 -4.0875 -8.6014 2.1847 19 6 -5.0624 -8.3044 4.0725 20 7 -5.4445 -7.3478 4.8877 21 14 -5.8314 -10.0020 4.1991 22 1 -5.0436 -10.8330 5.1446 23 1 -7.2264 -9.8780 4.6929 24 1 -5.8356 -10.6446 2.8603 25 8 0.4792 -2.9412 0.8639 26 1 -0.3633 0.0775 1.0247 27 1 -0.3633 0.8486 -0.5796 28 1 -0.3633 -0.9264 -0.4451 29 1 3.1716 -0.8755 -1.2679 30 1 1.6113 -1.8587 -1.2679 31 1 1.9856 -1.9078 3.5344 32 1 0.1667 -3.8402 3.9727 33 1 -1.4613 -4.8693 0.5384 34 1 -1.2658 -5.2525 3.5810 35 1 -1.7398 -7.4689 4.8885 36 1 -2.4185 -5.8238 4.8503 37 1 -3.4118 -7.1832 5.4281 38 1 -5.1092 -6.4456 4.7677 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491353348.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:22 Heat of formation + Delta-G solvation = 8.728136 kcal Electronic energy + Delta-G solvation = -20305.293443 eV Core-core repulsion = 17115.365061 eV Total energy + Delta-G solvation = -3189.928383 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.64643 -40.77230 -38.73637 -37.17867 -35.40516 -33.87094 -33.63393 -30.31431 -29.28218 -28.32421 -26.84658 -25.09881 -23.05119 -22.89298 -21.76379 -20.83847 -20.14084 -19.27890 -18.57529 -17.40529 -17.08512 -16.81631 -16.53691 -16.23189 -15.68195 -15.57708 -14.82817 -14.44172 -14.21490 -14.04912 -13.97345 -13.85412 -13.67031 -13.39559 -13.20842 -12.79497 -12.75533 -12.45479 -12.39967 -12.04061 -11.94461 -11.84201 -11.44591 -11.02753 -10.98444 -10.62468 -10.56843 -9.86066 -8.91406 -8.77746 -6.15205 -0.57487 1.03206 1.52801 1.54655 1.71782 1.74689 1.83235 2.38681 2.47117 2.84214 2.92678 3.07079 3.42707 3.69284 3.76372 3.86105 3.96197 4.01038 4.16923 4.27249 4.39438 4.42894 4.63210 4.66413 4.73803 4.80324 4.81332 4.86087 4.91177 4.96688 5.04679 5.08322 5.11468 5.25689 5.35703 5.51721 5.75154 5.81232 6.09357 6.54126 6.82281 7.26288 7.83486 8.33852 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.044218 B = 0.003173 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.080656 B = 8821.658907 C = 9025.735536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.130 4.130 3 H 0.143 0.857 4 C -0.169 4.169 5 C -0.093 4.093 6 H 0.167 0.833 7 C 0.032 3.968 8 C -0.209 4.209 9 C -0.163 4.163 10 C -0.025 4.025 11 C -0.018 4.018 12 C -0.174 4.174 13 C 0.456 3.544 14 O -0.644 6.644 15 N -0.454 5.454 16 C 0.061 3.939 17 C -0.429 4.429 18 H 0.056 0.944 19 C -0.020 4.020 20 N -0.870 5.870 21 Si 1.126 2.874 22 H -0.258 1.258 23 H -0.276 1.276 24 H -0.280 1.280 25 O -0.180 6.180 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.036 0.964 29 H 0.129 0.871 30 H 0.079 0.921 31 H 0.183 0.817 32 H 0.171 0.829 33 H 0.113 0.887 34 H 0.154 0.846 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.396 14.721 -1.133 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.147 4.147 3 H 0.161 0.839 4 C -0.206 4.206 5 C -0.111 4.111 6 H 0.184 0.816 7 C -0.019 4.019 8 C -0.227 4.227 9 C -0.182 4.182 10 C -0.073 4.073 11 C -0.039 4.039 12 C -0.195 4.195 13 C 0.251 3.749 14 O -0.535 6.535 15 N -0.171 5.171 16 C -0.082 4.082 17 C -0.557 4.557 18 H 0.074 0.926 19 C -0.224 4.224 20 N -0.503 5.503 21 Si 0.945 3.055 22 H -0.183 1.183 23 H -0.201 1.201 24 H -0.205 1.205 25 O -0.077 6.077 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.147 0.853 30 H 0.097 0.903 31 H 0.200 0.800 32 H 0.188 0.812 33 H 0.131 0.869 34 H 0.171 0.829 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.047 13.684 -1.020 21.114 hybrid contribution 0.632 0.694 -1.031 1.394 sum 16.678 14.378 -2.051 22.116 Atomic orbital electron populations 1.21422 0.93874 1.01856 1.01691 1.22621 0.94896 0.95223 1.01989 0.83880 1.23271 1.03907 1.01230 0.92177 1.20997 0.99472 0.95970 0.94638 0.81590 1.22299 0.92739 0.94479 0.92396 1.21743 1.03594 1.01728 0.95650 1.22641 0.98304 0.99535 0.97717 1.19635 1.01127 0.98506 0.88054 1.19921 0.92363 0.91981 0.99683 1.21905 0.98738 0.98312 1.00537 1.17604 0.87458 0.84127 0.85702 1.90622 1.67128 1.71823 1.23909 1.43808 1.34074 1.32079 1.07109 1.22076 1.00381 1.01692 0.84049 1.20354 1.10229 1.17352 1.07737 0.92557 1.27922 0.93542 1.08134 0.92834 1.70814 1.37679 1.01987 1.39815 0.82788 0.76081 0.69432 0.77183 1.18251 1.20110 1.20545 1.84003 1.44356 1.41588 1.37773 0.93001 0.90326 0.94453 0.85298 0.90287 0.79961 0.81168 0.86936 0.82891 0.91528 0.90043 0.90829 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.15 71.98 0.66 -1.76 16 2 C -0.13 -1.78 6.41 -10.79 -0.07 -1.85 16 3 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 4 C -0.17 -2.49 9.81 30.59 0.30 -2.19 16 5 C -0.09 -1.42 6.23 -11.54 -0.07 -1.49 16 6 H 0.17 1.47 8.14 -2.38 -0.02 1.45 16 7 C 0.03 0.74 5.89 24.98 0.15 0.89 16 8 C -0.21 -4.45 10.76 22.07 0.24 -4.22 16 9 C -0.16 -4.23 10.22 22.72 0.23 -4.00 16 10 C -0.02 -0.80 7.03 23.03 0.16 -0.63 16 11 C -0.02 -0.69 9.51 22.51 0.21 -0.47 16 12 C -0.17 -7.11 8.53 22.46 0.19 -6.92 16 13 C 0.46 24.32 7.39 85.00 0.63 24.95 16 14 O -0.64 -40.19 15.91 -4.80 -0.08 -40.26 16 15 N -0.45 -24.24 2.76 -669.30 -1.85 -26.09 16 16 C 0.06 2.56 9.05 127.77 1.16 3.71 16 17 C -0.43 -25.37 8.89 84.13 0.75 -24.62 16 18 H 0.06 3.64 7.72 -2.91 -0.02 3.62 16 19 C -0.02 -1.09 4.73 84.96 0.40 -0.68 16 20 N -0.87 -48.41 12.14 21.68 0.26 -48.14 16 21 Si 1.13 47.65 30.01 68.60 2.06 49.71 16 22 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 23 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 24 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 25 O -0.18 -5.46 9.60 -6.40 -0.06 -5.53 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.04 0.87 7.26 -2.38 -0.02 0.85 16 29 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 1.56 7.85 -2.38 -0.02 1.54 16 31 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.17 3.71 7.15 -2.91 -0.02 3.69 16 33 H 0.11 4.81 7.46 -2.91 -0.02 4.79 16 34 H 0.15 5.01 4.89 -2.91 -0.01 4.99 16 35 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 36 H 0.08 2.85 6.38 -2.38 -0.02 2.84 16 37 H 0.07 3.37 5.40 -2.38 -0.01 3.36 16 38 H 0.27 15.12 7.34 -92.71 -0.68 14.44 16 Total: -1.00 -75.78 323.69 6.43 -69.35 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 1.16 Total: 20.24 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 4.94 Total: -19.29 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -1.58 Total: -74.23 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -0.14 Total: -45.79 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.06 Total: 49.71 kcal Total: -75.78 6.43 -69.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491353348.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.082 kcal (2) G-P(sol) polarization free energy of solvation -75.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds