Wall clock time and date at job start Mon Mar 30 2020 02:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47486 * 2 1 4 4 C 1.52994 * 109.47468 * 120.00514 * 2 1 3 5 5 C 1.50698 * 109.47179 * 294.85830 * 4 2 1 6 6 H 1.08001 * 119.99965 * 355.37029 * 5 4 2 7 7 C 1.37876 * 120.00251 * 175.37385 * 5 4 2 8 8 N 1.31519 * 119.99722 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00064 * 180.02562 * 7 5 4 10 10 H 1.48511 * 109.46815 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.46780 * 299.99407 * 9 7 5 12 12 H 1.48500 * 109.47006 * 59.99859 * 9 7 5 13 13 N 1.46904 * 109.46793 * 240.00565 * 2 1 3 14 14 C 1.46728 * 111.00006 * 189.94481 * 13 2 1 15 15 C 1.53599 * 116.31868 * 193.99399 * 14 13 2 16 16 S 1.80119 * 112.84338 * 315.48189 * 15 14 13 17 17 O 1.42104 * 108.60061 * 330.89753 * 16 15 14 18 18 O 1.42101 * 108.62054 * 199.79785 * 16 15 14 19 19 C 1.83542 * 101.75938 * 85.34572 * 16 15 14 20 20 C 1.45676 * 109.73686 * 291.47495 * 19 16 15 21 21 H 1.09003 * 108.35595 * 303.14615 * 20 19 16 22 22 C 1.53000 * 108.35150 * 186.07623 * 20 19 16 23 23 C 1.45469 * 111.00364 * 66.38662 * 13 2 1 24 24 H 1.08996 * 109.46746 * 299.99569 * 1 2 3 25 25 H 1.08993 * 109.47084 * 59.99382 * 1 2 3 26 26 H 1.08997 * 109.47005 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47401 * 174.85305 * 4 2 1 28 28 H 1.08996 * 109.47294 * 54.86074 * 4 2 1 29 29 H 0.96999 * 119.99960 * 359.97438 * 8 7 5 30 30 H 1.09003 * 108.10513 * 315.77122 * 14 13 2 31 31 H 1.08996 * 108.11202 * 72.21306 * 14 13 2 32 32 H 1.08991 * 108.80895 * 194.60923 * 15 14 13 33 33 H 1.09011 * 108.71626 * 76.28170 * 15 14 13 34 34 H 1.09000 * 109.42377 * 171.39691 * 19 16 15 35 35 H 1.08996 * 109.42666 * 51.56181 * 19 16 15 36 36 H 1.09007 * 109.47011 * 294.44797 * 22 20 19 37 37 H 1.09002 * 109.46737 * 54.44297 * 22 20 19 38 38 H 1.08993 * 109.47526 * 174.44690 * 22 20 19 39 39 H 1.08998 * 109.91012 * 346.23656 * 23 13 2 40 40 H 1.08997 * 109.91444 * 107.39407 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6444 0.0586 2.4763 6 1 1.1511 1.0138 2.3733 7 6 1.9124 -0.4471 3.7307 8 7 2.5128 -1.6105 3.8562 9 14 1.4213 0.5194 5.2519 10 1 1.8174 -0.2361 6.4676 11 1 2.1053 1.8375 5.2430 12 1 -0.0494 0.7248 5.2545 13 7 2.0196 -0.6924 -1.1996 14 6 3.4669 -0.9203 -1.1212 15 6 4.1640 -1.3273 -2.4280 16 16 3.2545 -2.5838 -3.3437 17 8 2.5219 -3.3767 -2.4196 18 8 4.1458 -3.2190 -4.2499 19 6 2.0712 -1.5624 -4.3057 20 6 1.1004 -0.9550 -3.4053 21 1 0.6061 -1.7499 -2.8466 22 6 0.0437 -0.2386 -4.2485 23 6 1.6805 0.0489 -2.4044 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1262 -0.8018 1.2042 28 1 1.6036 -1.7190 1.2963 29 1 2.7668 -2.1128 3.0662 30 1 3.9348 -0.0051 -0.7584 31 1 3.6474 -1.7019 -0.3833 32 1 5.1555 -1.7133 -2.1920 33 1 4.2719 -0.4434 -3.0569 34 1 1.5515 -2.1927 -5.0273 35 1 2.6146 -0.7794 -4.8345 36 1 0.5057 0.5936 -4.7797 37 1 -0.3819 -0.9377 -4.9684 38 1 -0.7455 0.1387 -3.5983 39 1 0.9389 0.8135 -2.1734 40 1 2.5756 0.5120 -2.8196 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566301122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:18 Heat of formation + Delta-G solvation = -71.477836 kcal Electronic energy + Delta-G solvation = -20942.305036 eV Core-core repulsion = 17884.342613 eV Total energy + Delta-G solvation = -3057.962423 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.19807 -36.80943 -35.86723 -35.84101 -33.59345 -32.10444 -29.58479 -27.79642 -27.06555 -25.66625 -22.98054 -22.37375 -20.42587 -19.57621 -18.58084 -17.05702 -16.72391 -16.62883 -15.72167 -15.68935 -14.88228 -14.59944 -13.91696 -13.70327 -13.62581 -13.52439 -13.03608 -12.70011 -12.49973 -12.14857 -12.02103 -11.95481 -11.79129 -11.67477 -11.41516 -11.21858 -11.05816 -10.83992 -10.80169 -10.67729 -10.62559 -10.16039 -10.12775 -10.04732 -9.48285 -8.57704 -8.31036 -7.95285 -6.34080 -4.03464 0.06305 2.72060 3.43374 3.45325 3.64117 3.69218 3.97422 4.00289 4.47639 4.54220 4.57615 4.65195 4.84506 5.00052 5.15335 5.31399 5.40302 5.42497 5.47700 5.56736 5.64611 5.70593 5.81550 5.94044 6.00637 6.03341 6.17621 6.20151 6.26435 6.57093 6.72172 7.00829 7.22321 7.33724 7.52045 7.66509 8.22432 8.46740 8.89631 9.68289 11.06609 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.026992 B = 0.005261 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.110959 B = 5321.377134 C = 5977.955376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.097 3.903 3 H 0.033 0.967 4 C 0.011 3.989 5 C -0.600 4.600 6 H 0.048 0.952 7 C 0.016 3.984 8 N -0.912 5.912 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.532 5.532 14 C 0.075 3.925 15 C -0.616 4.616 16 S 2.413 3.587 17 O -0.908 6.908 18 O -0.957 6.957 19 C -0.575 4.575 20 C -0.091 4.091 21 H 0.104 0.896 22 C -0.139 4.139 23 C 0.033 3.967 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.057 0.943 27 H 0.008 0.992 28 H 0.023 0.977 29 H 0.270 0.730 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.139 0.861 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.121 0.879 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.740 3.988 -17.255 17.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.009 4.009 3 H 0.051 0.949 4 C -0.026 4.026 5 C -0.638 4.638 6 H 0.066 0.934 7 C -0.188 4.188 8 N -0.548 5.548 9 Si 0.896 3.104 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.257 5.257 14 C -0.054 4.054 15 C -0.745 4.745 16 S 2.594 3.406 17 O -0.905 6.905 18 O -0.954 6.954 19 C -0.703 4.703 20 C -0.111 4.111 21 H 0.122 0.878 22 C -0.199 4.199 23 C -0.096 4.096 24 H 0.088 0.912 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.026 0.974 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.157 0.843 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.140 0.860 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.805 2.569 -15.576 15.807 hybrid contribution 0.485 1.772 -1.838 2.599 sum -0.320 4.341 -17.415 17.950 Atomic orbital electron populations 1.21741 0.94575 1.02048 1.00226 1.21768 0.95496 0.94888 0.88777 0.94895 1.19403 0.95502 0.96604 0.91071 1.21962 1.43023 1.06747 0.92116 0.93356 1.25784 0.94720 0.97056 1.01253 1.70765 1.37505 1.12717 1.33769 0.83568 0.76119 0.74984 0.75755 1.20809 1.21629 1.21461 1.62173 1.11591 1.48664 1.03273 1.21589 0.88107 1.02673 0.93017 1.30419 1.14234 1.18612 1.11187 1.08317 0.77352 0.78000 0.76882 1.93630 1.71085 1.64167 1.61607 1.93567 1.64829 1.72312 1.64678 1.28977 1.14874 1.14588 1.11881 1.19685 0.96128 1.00134 0.95176 0.87793 1.21909 0.98265 1.00153 0.99527 1.22375 1.00434 0.95446 0.91374 0.91249 0.94748 0.92345 0.97426 0.95842 0.91907 0.93284 0.88771 0.84288 0.85831 0.85112 0.86027 0.92861 0.92654 0.92052 0.89565 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.97 37.16 0.33 -2.01 16 2 C 0.10 1.90 1.84 -67.71 -0.12 1.78 16 3 H 0.03 0.65 8.11 -51.93 -0.42 0.23 16 4 C 0.01 0.28 3.40 -27.89 -0.09 0.19 16 5 C -0.60 -16.46 8.32 -34.44 -0.29 -16.74 16 6 H 0.05 1.29 7.24 -52.49 -0.38 0.91 16 7 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 8 N -0.91 -27.81 13.65 55.43 0.76 -27.05 16 9 Si 1.07 25.00 29.90 -169.99 -5.08 19.91 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.53 -8.75 3.74 -227.49 -0.85 -9.60 16 14 C 0.07 1.17 3.75 -3.61 -0.01 1.15 16 15 C -0.62 -7.01 5.56 37.47 0.21 -6.80 16 16 S 2.41 30.55 5.19 -107.50 -0.56 29.99 16 17 O -0.91 -15.60 16.75 -57.83 -0.97 -16.57 16 18 O -0.96 -14.40 18.10 -57.83 -1.05 -15.45 16 19 C -0.57 -5.34 5.15 33.70 0.17 -5.17 16 20 C -0.09 -1.01 2.09 -93.99 -0.20 -1.20 16 21 H 0.10 1.38 7.43 -51.93 -0.39 1.00 16 22 C -0.14 -1.25 8.82 37.16 0.33 -0.92 16 23 C 0.03 0.41 4.50 -4.51 -0.02 0.39 16 24 H 0.07 1.36 7.06 -51.93 -0.37 0.99 16 25 H 0.03 0.51 6.51 -51.93 -0.34 0.17 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.01 0.19 6.24 -51.93 -0.32 -0.13 16 28 H 0.02 0.64 7.83 -51.93 -0.41 0.23 16 29 H 0.27 8.26 7.19 -40.82 -0.29 7.97 16 30 H 0.05 0.77 7.92 -51.93 -0.41 0.36 16 31 H 0.09 1.69 6.82 -51.93 -0.35 1.34 16 32 H 0.14 1.38 8.14 -51.75 -0.42 0.96 16 33 H 0.12 1.00 7.03 -51.74 -0.36 0.64 16 34 H 0.13 1.01 7.99 -51.93 -0.41 0.60 16 35 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.44 8.01 -51.93 -0.42 0.03 16 38 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 39 H 0.09 1.06 5.67 -51.93 -0.29 0.76 16 40 H 0.05 0.51 6.15 -51.93 -0.32 0.19 16 LS Contribution 314.41 15.07 4.74 4.74 Total: -1.00 -34.74 314.41 -9.20 -43.94 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.39 Total: -0.94 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 0.21 Total: -28.98 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.09 Total: -36.65 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -2.02 Total: -32.02 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.91 kcal Atomic # 16 Polarization: 30.55 SS G_CDS: -0.56 Total: 29.99 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.74 -9.20 -43.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566301122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.537 kcal (2) G-P(sol) polarization free energy of solvation -34.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds