Wall clock time and date at job start Mon Mar 30 2020 02:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47486 * 2 1 4 4 C 1.52994 * 109.47468 * 120.00514 * 2 1 3 5 5 C 1.50698 * 109.47179 * 294.85830 * 4 2 1 6 6 H 1.08001 * 119.99965 * 355.37029 * 5 4 2 7 7 C 1.37876 * 120.00251 * 175.37385 * 5 4 2 8 8 N 1.31519 * 119.99722 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00064 * 180.02562 * 7 5 4 10 10 H 1.48511 * 109.46815 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.46780 * 299.99407 * 9 7 5 12 12 H 1.48500 * 109.47006 * 59.99859 * 9 7 5 13 13 N 1.46904 * 109.46793 * 240.00565 * 2 1 3 14 14 C 1.46728 * 111.00006 * 189.94481 * 13 2 1 15 15 C 1.53599 * 116.31868 * 193.99399 * 14 13 2 16 16 S 1.80119 * 112.84338 * 315.48189 * 15 14 13 17 17 O 1.42104 * 108.60061 * 330.89753 * 16 15 14 18 18 O 1.42101 * 108.62054 * 199.79785 * 16 15 14 19 19 C 1.83542 * 101.75938 * 85.34572 * 16 15 14 20 20 C 1.45676 * 109.73686 * 291.47495 * 19 16 15 21 21 H 1.09003 * 108.35595 * 303.14615 * 20 19 16 22 22 C 1.53000 * 108.35150 * 186.07623 * 20 19 16 23 23 C 1.45469 * 111.00364 * 66.38662 * 13 2 1 24 24 H 1.08996 * 109.46746 * 299.99569 * 1 2 3 25 25 H 1.08993 * 109.47084 * 59.99382 * 1 2 3 26 26 H 1.08997 * 109.47005 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47401 * 174.85305 * 4 2 1 28 28 H 1.08996 * 109.47294 * 54.86074 * 4 2 1 29 29 H 0.96999 * 119.99960 * 359.97438 * 8 7 5 30 30 H 1.09003 * 108.10513 * 315.77122 * 14 13 2 31 31 H 1.08996 * 108.11202 * 72.21306 * 14 13 2 32 32 H 1.08991 * 108.80895 * 194.60923 * 15 14 13 33 33 H 1.09011 * 108.71626 * 76.28170 * 15 14 13 34 34 H 1.09000 * 109.42377 * 171.39691 * 19 16 15 35 35 H 1.08996 * 109.42666 * 51.56181 * 19 16 15 36 36 H 1.09007 * 109.47011 * 294.44797 * 22 20 19 37 37 H 1.09002 * 109.46737 * 54.44297 * 22 20 19 38 38 H 1.08993 * 109.47526 * 174.44690 * 22 20 19 39 39 H 1.08998 * 109.91012 * 346.23656 * 23 13 2 40 40 H 1.08997 * 109.91444 * 107.39407 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6444 0.0586 2.4763 6 1 1.1511 1.0138 2.3733 7 6 1.9124 -0.4471 3.7307 8 7 2.5128 -1.6105 3.8562 9 14 1.4213 0.5194 5.2519 10 1 1.8174 -0.2361 6.4676 11 1 2.1053 1.8375 5.2430 12 1 -0.0494 0.7248 5.2545 13 7 2.0196 -0.6924 -1.1996 14 6 3.4669 -0.9203 -1.1212 15 6 4.1640 -1.3273 -2.4280 16 16 3.2545 -2.5838 -3.3437 17 8 2.5219 -3.3767 -2.4196 18 8 4.1458 -3.2190 -4.2499 19 6 2.0712 -1.5624 -4.3057 20 6 1.1004 -0.9550 -3.4053 21 1 0.6061 -1.7499 -2.8466 22 6 0.0437 -0.2386 -4.2485 23 6 1.6805 0.0489 -2.4044 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1262 -0.8018 1.2042 28 1 1.6036 -1.7190 1.2963 29 1 2.7668 -2.1128 3.0662 30 1 3.9348 -0.0051 -0.7584 31 1 3.6474 -1.7019 -0.3833 32 1 5.1555 -1.7133 -2.1920 33 1 4.2719 -0.4434 -3.0569 34 1 1.5515 -2.1927 -5.0273 35 1 2.6146 -0.7794 -4.8345 36 1 0.5057 0.5936 -4.7797 37 1 -0.3819 -0.9377 -4.9684 38 1 -0.7455 0.1387 -3.5983 39 1 0.9389 0.8135 -2.1734 40 1 2.5756 0.5120 -2.8196 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566301122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:18 Heat of formation + Delta-G solvation = -98.143884 kcal Electronic energy + Delta-G solvation = -20943.461363 eV Core-core repulsion = 17884.342613 eV Total energy + Delta-G solvation = -3059.118750 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.39936 -37.93374 -37.02784 -36.97780 -35.33611 -33.65829 -30.97141 -28.67339 -28.49588 -27.10256 -24.86259 -23.62552 -21.38478 -21.05870 -19.64220 -18.88061 -17.92629 -17.73365 -16.96095 -16.74138 -16.06107 -15.90435 -15.61576 -15.03231 -14.92650 -14.47578 -14.39392 -13.99589 -13.59832 -13.43651 -13.22151 -13.14850 -13.01621 -12.94015 -12.92201 -12.56569 -12.53671 -12.26147 -12.09723 -11.96219 -11.80944 -11.69982 -11.51425 -11.20061 -11.01970 -10.65978 -10.50123 -9.23623 -8.64387 -6.34194 -0.90008 1.52892 1.61763 1.80070 1.80161 2.57366 2.74812 2.80787 2.97615 3.20355 3.62648 3.70973 3.73613 3.89582 4.10745 4.21253 4.29894 4.36375 4.46770 4.50017 4.59637 4.64193 4.72904 4.82054 4.83588 4.90247 5.03103 5.13697 5.17708 5.26313 5.33223 5.36418 5.46814 5.55848 5.87963 6.17694 6.21612 6.30278 6.61613 7.48097 8.75860 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.026992 B = 0.005261 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.110959 B = 5321.377134 C = 5977.955376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.107 3.893 3 H 0.037 0.963 4 C 0.016 3.984 5 C -0.605 4.605 6 H 0.057 0.943 7 C -0.042 4.042 8 N -0.942 5.942 9 Si 1.117 2.883 10 H -0.289 1.289 11 H -0.267 1.267 12 H -0.268 1.268 13 N -0.545 5.545 14 C 0.074 3.926 15 C -0.606 4.606 16 S 2.402 3.598 17 O -0.970 6.970 18 O -0.987 6.987 19 C -0.547 4.547 20 C -0.092 4.092 21 H 0.074 0.926 22 C -0.136 4.136 23 C 0.025 3.975 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.039 0.961 27 H -0.009 1.009 28 H -0.016 1.016 29 H 0.253 0.747 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.150 0.850 33 H 0.171 0.829 34 H 0.154 0.846 35 H 0.168 0.832 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.430 7.027 -19.804 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.001 4.001 3 H 0.055 0.945 4 C -0.022 4.022 5 C -0.643 4.643 6 H 0.075 0.925 7 C -0.239 4.239 8 N -0.580 5.580 9 Si 0.938 3.062 10 H -0.214 1.214 11 H -0.192 1.192 12 H -0.193 1.193 13 N -0.270 5.270 14 C -0.055 4.055 15 C -0.736 4.736 16 S 2.589 3.411 17 O -0.967 6.967 18 O -0.984 6.984 19 C -0.679 4.679 20 C -0.113 4.113 21 H 0.092 0.908 22 C -0.195 4.195 23 C -0.103 4.103 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.059 0.941 27 H 0.009 0.991 28 H 0.002 0.998 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.168 0.832 33 H 0.188 0.812 34 H 0.172 0.828 35 H 0.186 0.814 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.476 5.579 -18.149 19.044 hybrid contribution 0.687 0.851 -1.122 1.567 sum -0.789 6.430 -19.271 20.331 Atomic orbital electron populations 1.21652 0.93514 1.01254 1.01440 1.21473 0.96287 0.94241 0.88068 0.94476 1.19283 0.94301 0.94967 0.93617 1.22391 1.41872 1.06989 0.93057 0.92501 1.27405 0.94092 0.97128 1.05272 1.70910 1.40012 1.14227 1.32856 0.82944 0.77129 0.74382 0.71719 1.21431 1.19229 1.19303 1.62023 1.11991 1.49472 1.03547 1.21487 0.88211 1.01125 0.94662 1.30285 1.13835 1.19996 1.09441 1.08323 0.77501 0.78691 0.76535 1.93566 1.72293 1.67143 1.63717 1.93524 1.66049 1.74005 1.64806 1.28780 1.13214 1.14885 1.11051 1.19649 0.97024 0.99306 0.95280 0.90767 1.21898 0.97382 1.00876 0.99374 1.22621 1.02218 0.95763 0.89709 0.92852 0.90620 0.94133 0.99073 0.99792 0.93790 0.93438 0.93157 0.83185 0.81163 0.82767 0.81393 0.90511 0.91525 0.92409 0.88800 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.37 8.97 71.98 0.65 -3.73 16 2 C 0.11 4.21 1.84 44.91 0.08 4.29 16 3 H 0.04 1.43 8.11 -2.39 -0.02 1.41 16 4 C 0.02 0.82 3.40 29.85 0.10 0.92 16 5 C -0.60 -33.98 8.32 25.60 0.21 -33.77 16 6 H 0.06 3.04 7.24 -2.91 -0.02 3.02 16 7 C -0.04 -2.46 5.46 84.65 0.46 -2.00 16 8 N -0.94 -60.09 13.65 21.45 0.29 -59.80 16 9 Si 1.12 50.38 29.90 68.60 2.05 52.43 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 12 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 13 N -0.55 -17.75 3.74 -873.65 -3.27 -21.02 16 14 C 0.07 2.34 3.75 86.54 0.32 2.66 16 15 C -0.61 -12.77 5.56 72.18 0.40 -12.37 16 16 S 2.40 58.76 5.19 -56.49 -0.29 58.47 16 17 O -0.97 -35.16 16.75 -127.38 -2.13 -37.30 16 18 O -0.99 -28.92 18.10 -127.38 -2.31 -31.22 16 19 C -0.55 -7.83 5.15 69.74 0.36 -7.47 16 20 C -0.09 -1.71 2.09 -12.98 -0.03 -1.74 16 21 H 0.07 1.89 7.43 -2.39 -0.02 1.87 16 22 C -0.14 -1.77 8.82 71.98 0.64 -1.14 16 23 C 0.02 0.53 4.50 86.63 0.39 0.92 16 24 H 0.05 2.07 7.06 -2.39 -0.02 2.05 16 25 H 0.08 2.08 6.51 -2.39 -0.02 2.06 16 26 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 27 H -0.01 -0.49 6.24 -2.39 -0.01 -0.50 16 28 H -0.02 -0.97 7.83 -2.39 -0.02 -0.99 16 29 H 0.25 16.56 7.19 -92.71 -0.67 15.90 16 30 H 0.05 1.48 7.92 -2.39 -0.02 1.46 16 31 H 0.05 1.98 6.82 -2.39 -0.02 1.97 16 32 H 0.15 2.84 8.14 -2.51 -0.02 2.82 16 33 H 0.17 1.93 7.03 -2.50 -0.02 1.92 16 34 H 0.15 1.67 7.99 -2.39 -0.02 1.65 16 35 H 0.17 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.07 0.75 8.01 -2.39 -0.02 0.73 16 38 H 0.06 0.82 8.09 -2.39 -0.02 0.80 16 39 H 0.09 1.90 5.67 -2.39 -0.01 1.89 16 40 H 0.08 1.25 6.15 -2.39 -0.01 1.23 16 Total: -1.00 -81.68 314.41 -0.96 -82.64 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 1.11 Total: 9.21 kcal Atomic # 6 Polarization: -57.00 SS G_CDS: 3.59 Total: -53.42 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -2.98 Total: -80.81 kcal Atomic # 8 Polarization: -64.08 SS G_CDS: -4.44 Total: -68.52 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.05 Total: 52.43 kcal Atomic # 16 Polarization: 58.76 SS G_CDS: -0.29 Total: 58.47 kcal Total: -81.68 -0.96 -82.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566301122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.507 kcal (2) G-P(sol) polarization free energy of solvation -81.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds