Wall clock time and date at job start Mon Mar 30 2020 02:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47112 * 2 1 4 4 C 1.53002 * 109.47330 * 240.00091 * 2 1 3 5 5 C 1.50694 * 109.47058 * 174.99953 * 4 2 1 6 6 H 1.08000 * 120.00215 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00210 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99786 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00672 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47290 * 89.99623 * 9 7 5 11 11 H 1.48496 * 109.47352 * 210.00157 * 9 7 5 12 12 H 1.48506 * 109.46815 * 330.00283 * 9 7 5 13 13 N 1.46897 * 109.46874 * 119.99494 * 2 1 3 14 14 C 1.47008 * 111.00375 * 295.00133 * 13 2 1 15 15 C 1.45116 * 115.49998 * 216.78308 * 14 13 2 16 16 C 1.55229 * 110.06085 * 296.56694 * 15 14 13 17 17 H 1.09003 * 109.44002 * 312.22231 * 16 15 14 18 18 C 1.53006 * 109.43225 * 192.31243 * 16 15 14 19 19 S 1.79279 * 109.69989 * 72.24475 * 16 15 14 20 20 O 1.42100 * 107.92759 * 27.92611 * 19 16 15 21 21 O 1.42102 * 107.93391 * 157.28079 * 19 16 15 22 22 C 1.82371 * 105.88361 * 272.55418 * 19 16 15 23 23 C 1.45428 * 110.99764 * 51.78200 * 13 2 1 24 24 H 1.09004 * 109.47112 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47403 * 300.00572 * 1 2 3 26 26 H 1.09009 * 109.47251 * 59.99932 * 1 2 3 27 27 H 1.09001 * 109.46852 * 294.99864 * 4 2 1 28 28 H 1.08994 * 109.47117 * 54.99658 * 4 2 1 29 29 H 0.96996 * 119.99963 * 179.97438 * 8 7 5 30 30 H 1.08993 * 108.27595 * 95.22304 * 14 13 2 31 31 H 1.09004 * 108.27506 * 338.34700 * 14 13 2 32 32 H 1.08999 * 109.36877 * 56.75415 * 15 14 13 33 33 H 1.09001 * 109.36911 * 176.38373 * 15 14 13 34 34 H 1.08997 * 109.46857 * 60.00518 * 18 16 15 35 35 H 1.09003 * 109.47312 * 179.97438 * 18 16 15 36 36 H 1.09002 * 109.47275 * 300.00216 * 18 16 15 37 37 H 1.09006 * 109.22483 * 161.12548 * 22 19 16 38 38 H 1.08996 * 109.22197 * 280.47271 * 22 19 16 39 39 H 1.08997 * 109.57758 * 12.42815 * 23 13 2 40 40 H 1.09007 * 109.67125 * 252.11768 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1934 -2.3577 8 7 3.5765 -1.8378 -3.2995 9 14 6.0922 -1.0622 -2.4360 10 1 6.7001 -2.2148 -1.7239 11 1 6.5298 -1.0704 -3.8550 12 1 6.5268 0.2030 -1.7913 13 7 2.0196 -0.6924 1.1995 14 6 1.6483 0.0398 2.4190 15 6 2.6370 0.0263 3.4812 16 6 2.8561 -1.4251 3.9862 17 1 1.8898 -1.8975 4.1631 18 6 3.6545 -1.3951 5.2910 19 16 3.7606 -2.3633 2.7550 20 8 4.5644 -1.4540 2.0157 21 8 4.3936 -3.4523 3.4127 22 6 2.5029 -3.0474 1.6254 23 6 1.4013 -2.0018 1.3342 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.7517 -1.7715 -1.2056 28 1 1.6054 -0.2618 -2.1369 29 1 4.0609 -2.2445 -4.0348 30 1 0.7241 -0.3884 2.8068 31 1 1.4516 1.0772 2.1483 32 1 3.5789 0.4239 3.1034 33 1 2.2894 0.6477 4.3065 34 1 3.1031 -0.8284 6.0413 35 1 3.8083 -2.4140 5.6465 36 1 4.6203 -0.9214 5.1152 37 1 2.9804 -3.3358 0.6889 38 1 2.0506 -3.9274 2.0826 39 1 0.8881 -2.2604 0.4080 40 1 0.6857 -1.9869 2.1563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582789134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:44 Heat of formation + Delta-G solvation = -57.034977 kcal Electronic energy + Delta-G solvation = -21565.198280 eV Core-core repulsion = 18507.862146 eV Total energy + Delta-G solvation = -3057.336134 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.27980 -36.31049 -35.58283 -35.15035 -32.95078 -31.64541 -30.70735 -27.86619 -27.23542 -23.68763 -23.45162 -22.66589 -21.09696 -19.06462 -18.04068 -17.00389 -16.21682 -16.07446 -15.37382 -15.17022 -14.58204 -14.33666 -14.14743 -13.81824 -13.47701 -13.07921 -12.73039 -12.70737 -12.20288 -11.95611 -11.79329 -11.72417 -11.63500 -11.40225 -11.31701 -11.15200 -11.10190 -10.72843 -10.61656 -10.44346 -10.27904 -10.17407 -9.98786 -9.75874 -9.18445 -8.93578 -8.18394 -7.96959 -5.82003 -3.78303 0.51259 3.35510 3.50531 3.56044 3.64377 4.09975 4.20501 4.21756 4.68019 4.69078 4.79716 5.04931 5.08268 5.18243 5.36358 5.41543 5.53541 5.56551 5.60195 5.66016 5.69257 5.81729 5.82610 5.89880 5.93846 5.98711 6.07564 6.22025 6.32575 6.40578 6.49476 6.86559 7.33576 7.42970 7.76157 7.87392 8.21472 8.62634 9.32366 9.85106 11.29917 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018064 B = 0.008541 C = 0.006781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.714661 B = 3277.672214 C = 4128.337049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.086 3.914 3 H 0.079 0.921 4 C 0.028 3.972 5 C -0.486 4.486 6 H 0.072 0.928 7 C 0.049 3.951 8 N -0.910 5.910 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.293 1.293 12 H -0.273 1.273 13 N -0.496 5.496 14 C 0.019 3.981 15 C -0.087 4.087 16 C -0.595 4.595 17 H 0.124 0.876 18 C -0.132 4.132 19 S 2.435 3.565 20 O -0.897 6.897 21 O -0.971 6.971 22 C -0.588 4.588 23 C 0.054 3.946 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.018 0.982 28 H 0.022 0.978 29 H 0.256 0.744 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.144 0.856 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.340 1.430 15.009 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.021 4.021 3 H 0.097 0.903 4 C -0.009 4.009 5 C -0.524 4.524 6 H 0.090 0.910 7 C -0.149 4.149 8 N -0.551 5.551 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.220 1.220 12 H -0.197 1.197 13 N -0.219 5.219 14 C -0.109 4.109 15 C -0.126 4.126 16 C -0.702 4.702 17 H 0.142 0.858 18 C -0.190 4.190 19 S 2.615 3.385 20 O -0.894 6.894 21 O -0.968 6.968 22 C -0.719 4.719 23 C -0.076 4.076 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.036 0.964 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.163 0.837 38 H 0.133 0.867 39 H 0.110 0.890 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.873 1.216 14.762 15.934 hybrid contribution -0.782 -0.052 -0.061 0.787 sum -6.656 1.164 14.701 16.179 Atomic orbital electron populations 1.22633 0.99169 1.01528 1.01207 1.22122 0.90111 0.98786 0.91082 0.90275 1.19244 0.96970 0.95154 0.89579 1.21304 0.91387 1.32749 1.06990 0.90975 1.24974 0.97992 0.95960 0.95998 1.69974 1.35176 1.37446 1.12513 0.86651 0.86632 0.78936 0.76194 1.20781 1.21954 1.19736 1.63317 1.55060 1.01846 1.01697 1.21190 0.96779 1.00939 0.92040 1.20313 1.02833 0.91740 0.97675 1.30485 1.13804 1.11442 1.14505 0.85805 1.21501 0.99626 1.03656 0.94242 1.07648 0.78138 0.75986 0.76724 1.93611 1.62926 1.63517 1.69370 1.93495 1.72377 1.54988 1.75940 1.30692 1.15642 1.08345 1.17214 1.22304 0.93054 0.89494 1.02753 0.92728 0.93898 0.92105 0.96402 0.96025 0.93492 0.93912 0.90835 0.88450 0.90033 0.90902 0.90796 0.91502 0.83742 0.86681 0.89005 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.78 8.56 37.16 0.32 -2.46 16 2 C 0.09 1.61 2.09 -67.71 -0.14 1.46 16 3 H 0.08 1.51 7.92 -51.93 -0.41 1.10 16 4 C 0.03 0.67 4.38 -27.89 -0.12 0.55 16 5 C -0.49 -13.58 8.84 -34.44 -0.30 -13.88 16 6 H 0.07 2.07 7.74 -52.49 -0.41 1.67 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 8 N -0.91 -27.45 13.29 55.43 0.74 -26.72 16 9 Si 0.89 23.22 29.54 -169.99 -5.02 18.20 16 10 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 12 H -0.27 -7.07 7.11 56.52 0.40 -6.67 16 13 N -0.50 -8.40 3.03 -231.34 -0.70 -9.10 16 14 C 0.02 0.24 3.69 -7.46 -0.03 0.21 16 15 C -0.09 -1.05 4.87 -29.25 -0.14 -1.19 16 16 C -0.59 -7.07 2.58 -25.55 -0.07 -7.13 16 17 H 0.12 1.12 7.81 -51.75 -0.40 0.72 16 18 C -0.13 -1.42 8.88 37.16 0.33 -1.09 16 19 S 2.44 40.37 4.50 -107.50 -0.48 39.89 16 20 O -0.90 -19.07 15.90 -57.92 -0.92 -19.99 16 21 O -0.97 -18.13 17.19 -57.92 -1.00 -19.12 16 22 C -0.59 -9.10 6.72 38.02 0.26 -8.84 16 23 C 0.05 0.80 4.01 -3.75 -0.02 0.79 16 24 H 0.05 0.78 6.24 -51.93 -0.32 0.46 16 25 H 0.04 0.53 7.23 -51.93 -0.38 0.16 16 26 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 27 H 0.02 0.45 6.55 -51.93 -0.34 0.11 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.04 0.46 6.49 -51.93 -0.34 0.12 16 31 H 0.07 0.91 7.28 -51.93 -0.38 0.53 16 32 H 0.10 1.38 7.23 -51.93 -0.38 1.00 16 33 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.79 7.71 -51.93 -0.40 0.39 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.14 2.63 8.14 -51.92 -0.42 2.21 16 38 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.09 1.49 4.81 -51.93 -0.25 1.24 16 40 H 0.06 0.63 6.28 -51.93 -0.33 0.30 16 LS Contribution 313.39 15.07 4.72 4.72 Total: -1.00 -34.64 313.39 -9.10 -43.73 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -6.42 Total: -1.37 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: -0.01 Total: -30.23 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.04 Total: -35.82 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -1.92 Total: -39.12 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Atomic # 16 Polarization: 40.37 SS G_CDS: -0.48 Total: 39.89 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.64 -9.10 -43.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582789134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.302 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds