Wall clock time and date at job start Mon Mar 30 2020 02:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47112 * 2 1 4 4 C 1.53002 * 109.47330 * 240.00091 * 2 1 3 5 5 C 1.50694 * 109.47058 * 174.99953 * 4 2 1 6 6 H 1.08000 * 120.00215 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00210 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99786 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00672 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47290 * 89.99623 * 9 7 5 11 11 H 1.48496 * 109.47352 * 210.00157 * 9 7 5 12 12 H 1.48506 * 109.46815 * 330.00283 * 9 7 5 13 13 N 1.46897 * 109.46874 * 119.99494 * 2 1 3 14 14 C 1.47008 * 111.00375 * 295.00133 * 13 2 1 15 15 C 1.45116 * 115.49998 * 216.78308 * 14 13 2 16 16 C 1.55229 * 110.06085 * 296.56694 * 15 14 13 17 17 H 1.09003 * 109.44002 * 312.22231 * 16 15 14 18 18 C 1.53006 * 109.43225 * 192.31243 * 16 15 14 19 19 S 1.79279 * 109.69989 * 72.24475 * 16 15 14 20 20 O 1.42100 * 107.92759 * 27.92611 * 19 16 15 21 21 O 1.42102 * 107.93391 * 157.28079 * 19 16 15 22 22 C 1.82371 * 105.88361 * 272.55418 * 19 16 15 23 23 C 1.45428 * 110.99764 * 51.78200 * 13 2 1 24 24 H 1.09004 * 109.47112 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47403 * 300.00572 * 1 2 3 26 26 H 1.09009 * 109.47251 * 59.99932 * 1 2 3 27 27 H 1.09001 * 109.46852 * 294.99864 * 4 2 1 28 28 H 1.08994 * 109.47117 * 54.99658 * 4 2 1 29 29 H 0.96996 * 119.99963 * 179.97438 * 8 7 5 30 30 H 1.08993 * 108.27595 * 95.22304 * 14 13 2 31 31 H 1.09004 * 108.27506 * 338.34700 * 14 13 2 32 32 H 1.08999 * 109.36877 * 56.75415 * 15 14 13 33 33 H 1.09001 * 109.36911 * 176.38373 * 15 14 13 34 34 H 1.08997 * 109.46857 * 60.00518 * 18 16 15 35 35 H 1.09003 * 109.47312 * 179.97438 * 18 16 15 36 36 H 1.09002 * 109.47275 * 300.00216 * 18 16 15 37 37 H 1.09006 * 109.22483 * 161.12548 * 22 19 16 38 38 H 1.08996 * 109.22197 * 280.47271 * 22 19 16 39 39 H 1.08997 * 109.57758 * 12.42815 * 23 13 2 40 40 H 1.09007 * 109.67125 * 252.11768 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1934 -2.3577 8 7 3.5765 -1.8378 -3.2995 9 14 6.0922 -1.0622 -2.4360 10 1 6.7001 -2.2148 -1.7239 11 1 6.5298 -1.0704 -3.8550 12 1 6.5268 0.2030 -1.7913 13 7 2.0196 -0.6924 1.1995 14 6 1.6483 0.0398 2.4190 15 6 2.6370 0.0263 3.4812 16 6 2.8561 -1.4251 3.9862 17 1 1.8898 -1.8975 4.1631 18 6 3.6545 -1.3951 5.2910 19 16 3.7606 -2.3633 2.7550 20 8 4.5644 -1.4540 2.0157 21 8 4.3936 -3.4523 3.4127 22 6 2.5029 -3.0474 1.6254 23 6 1.4013 -2.0018 1.3342 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.7517 -1.7715 -1.2056 28 1 1.6054 -0.2618 -2.1369 29 1 4.0609 -2.2445 -4.0348 30 1 0.7241 -0.3884 2.8068 31 1 1.4516 1.0772 2.1483 32 1 3.5789 0.4239 3.1034 33 1 2.2894 0.6477 4.3065 34 1 3.1031 -0.8284 6.0413 35 1 3.8083 -2.4140 5.6465 36 1 4.6203 -0.9214 5.1152 37 1 2.9804 -3.3358 0.6889 38 1 2.0506 -3.9274 2.0826 39 1 0.8881 -2.2604 0.4080 40 1 0.6857 -1.9869 2.1563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582789134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:43 Heat of formation + Delta-G solvation = -83.127071 kcal Electronic energy + Delta-G solvation = -21566.329719 eV Core-core repulsion = 18507.862146 eV Total energy + Delta-G solvation = -3058.467572 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47563 -37.67760 -36.84958 -36.43393 -34.84981 -33.17095 -31.82175 -29.40298 -28.63982 -25.22413 -24.68338 -24.01187 -22.30230 -20.41492 -19.29924 -18.33881 -18.07068 -17.50415 -16.66513 -16.53999 -16.33577 -15.68416 -15.33947 -14.89149 -14.70556 -14.37418 -14.10098 -13.81712 -13.57764 -13.44964 -13.22961 -13.13294 -13.02142 -12.73139 -12.64032 -12.52786 -12.50884 -12.39213 -12.21795 -12.04251 -11.70501 -11.49268 -11.22263 -11.07123 -10.94971 -10.86563 -10.45080 -9.15466 -8.09245 -6.08782 -0.71404 1.34861 1.39115 1.49737 2.16605 2.48130 2.92740 3.03366 3.18753 3.27534 3.68496 3.73687 3.99344 4.01707 4.12250 4.30188 4.42330 4.46038 4.55327 4.63118 4.70904 4.78696 4.80826 4.84998 4.91325 5.01177 5.06657 5.11729 5.21356 5.24102 5.32244 5.41054 5.53776 5.78120 5.95060 6.28080 6.34500 6.54086 7.07826 7.56726 9.02505 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018064 B = 0.008541 C = 0.006781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.714661 B = 3277.672214 C = 4128.337049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.096 3.904 3 H 0.069 0.931 4 C 0.031 3.969 5 C -0.483 4.483 6 H 0.058 0.942 7 C -0.001 4.001 8 N -0.939 5.939 9 Si 0.932 3.068 10 H -0.288 1.288 11 H -0.281 1.281 12 H -0.270 1.270 13 N -0.531 5.531 14 C 0.011 3.989 15 C -0.088 4.088 16 C -0.559 4.559 17 H 0.170 0.830 18 C -0.140 4.140 19 S 2.413 3.587 20 O -0.963 6.963 21 O -1.007 7.007 22 C -0.587 4.587 23 C 0.050 3.950 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.001 0.999 28 H -0.004 1.004 29 H 0.256 0.744 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.127 0.873 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.153 0.847 39 H 0.074 0.926 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.826 2.295 18.143 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.011 4.011 3 H 0.087 0.913 4 C -0.006 4.006 5 C -0.522 4.522 6 H 0.076 0.924 7 C -0.197 4.197 8 N -0.582 5.582 9 Si 0.759 3.241 10 H -0.215 1.215 11 H -0.207 1.207 12 H -0.194 1.194 13 N -0.254 5.254 14 C -0.116 4.116 15 C -0.127 4.127 16 C -0.673 4.673 17 H 0.188 0.812 18 C -0.198 4.198 19 S 2.600 3.400 20 O -0.960 6.960 21 O -1.004 7.004 22 C -0.718 4.718 23 C -0.079 4.079 24 H 0.079 0.921 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.145 0.855 34 H 0.130 0.870 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.171 0.829 39 H 0.093 0.907 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.314 2.065 17.865 19.812 hybrid contribution -0.035 -0.303 -0.946 0.994 sum -8.349 1.762 16.919 18.949 Atomic orbital electron populations 1.22495 0.95724 1.02430 1.02754 1.21728 0.92728 0.97192 0.89502 0.91328 1.19119 0.94672 0.94729 0.92047 1.21593 0.93624 1.31193 1.05783 0.92373 1.25626 1.01353 0.96399 0.96299 1.70054 1.36293 1.38730 1.13160 0.85941 0.82963 0.78569 0.76596 1.21452 1.20659 1.19447 1.63094 1.56598 1.03094 1.02653 1.21347 0.98563 1.01274 0.90415 1.20431 1.01503 0.91875 0.98844 1.30159 1.14752 1.10428 1.11923 0.81190 1.21665 0.99610 1.04295 0.94278 1.07880 0.79048 0.75550 0.77504 1.93542 1.66162 1.64674 1.71619 1.93441 1.74365 1.56342 1.76233 1.30628 1.15561 1.10417 1.15213 1.22489 0.93209 0.88237 1.04014 0.92123 0.90202 0.92687 0.98052 0.98536 0.93514 0.89760 0.90090 0.91553 0.85528 0.86951 0.90905 0.92723 0.87948 0.82860 0.90721 0.87173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.72 8.56 71.98 0.62 -4.10 16 2 C 0.10 3.51 2.09 44.92 0.09 3.61 16 3 H 0.07 2.60 7.92 -2.39 -0.02 2.58 16 4 C 0.03 1.58 4.38 29.85 0.13 1.71 16 5 C -0.48 -28.13 8.84 25.60 0.23 -27.91 16 6 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 7 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 8 N -0.94 -58.73 13.29 21.45 0.28 -58.45 16 9 Si 0.93 49.26 29.54 68.60 2.03 51.29 16 10 H -0.29 -15.40 7.11 99.48 0.71 -14.69 16 11 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 12 H -0.27 -14.00 7.11 99.48 0.71 -13.29 16 13 N -0.53 -17.04 3.03 -885.83 -2.68 -19.72 16 14 C 0.01 0.23 3.69 83.89 0.31 0.54 16 15 C -0.09 -1.73 4.87 28.96 0.14 -1.59 16 16 C -0.56 -10.93 2.58 31.36 0.08 -10.85 16 17 H 0.17 1.84 7.81 -2.50 -0.02 1.82 16 18 C -0.14 -2.46 8.88 71.98 0.64 -1.82 16 19 S 2.41 79.39 4.50 -56.49 -0.25 79.14 16 20 O -0.96 -42.88 15.90 -127.29 -2.02 -44.90 16 21 O -1.01 -38.05 17.19 -127.29 -2.19 -40.24 16 22 C -0.59 -17.78 6.72 72.54 0.49 -17.30 16 23 C 0.05 1.36 4.01 87.14 0.35 1.71 16 24 H 0.06 1.56 6.24 -2.39 -0.01 1.55 16 25 H 0.08 1.58 7.23 -2.39 -0.02 1.56 16 26 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.00 0.07 6.55 -2.39 -0.02 0.05 16 28 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.08 1.13 6.49 -2.39 -0.02 1.11 16 31 H 0.08 1.63 7.28 -2.39 -0.02 1.61 16 32 H 0.07 1.78 7.23 -2.39 -0.02 1.76 16 33 H 0.13 1.48 8.10 -2.39 -0.02 1.46 16 34 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.33 7.71 -2.39 -0.02 1.31 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 37 H 0.10 3.99 8.14 -2.38 -0.02 3.97 16 38 H 0.15 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.07 2.31 4.81 -2.39 -0.01 2.30 16 40 H 0.11 1.77 6.28 -2.38 -0.01 1.76 16 Total: -1.00 -82.04 313.39 -0.29 -82.33 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.01 Total: 6.18 kcal Atomic # 6 Polarization: -59.15 SS G_CDS: 3.54 Total: -55.61 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -2.40 Total: -78.17 kcal Atomic # 8 Polarization: -80.93 SS G_CDS: -4.21 Total: -85.14 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.03 Total: 51.29 kcal Atomic # 16 Polarization: 79.39 SS G_CDS: -0.25 Total: 79.14 kcal Total: -82.04 -0.29 -82.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582789134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.801 kcal (2) G-P(sol) polarization free energy of solvation -82.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds