Wall clock time and date at job start Mon Mar 30 2020 02:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47256 * 2 1 4 4 C 1.53005 * 109.46912 * 119.99328 * 2 1 3 5 5 C 1.50701 * 109.47022 * 183.62640 * 4 2 1 6 6 H 1.08004 * 120.00052 * 355.30519 * 5 4 2 7 7 C 1.37875 * 119.99952 * 175.03257 * 5 4 2 8 8 N 1.31509 * 119.99917 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00058 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47398 * 89.99183 * 9 7 5 11 11 H 1.48494 * 109.47195 * 209.99734 * 9 7 5 12 12 H 1.48502 * 109.46842 * 329.99388 * 9 7 5 13 13 N 1.46896 * 109.47264 * 239.99743 * 2 1 3 14 14 C 1.47015 * 110.99849 * 309.49715 * 13 2 1 15 15 C 1.45111 * 115.50327 * 216.78310 * 14 13 2 16 16 C 1.55231 * 110.05918 * 296.57082 * 15 14 13 17 17 H 1.09007 * 109.43774 * 312.21682 * 16 15 14 18 18 C 1.53007 * 109.43260 * 192.31046 * 16 15 14 19 19 S 1.79284 * 109.70215 * 72.24252 * 16 15 14 20 20 O 1.42094 * 107.92533 * 27.92488 * 19 16 15 21 21 O 1.42098 * 107.93157 * 157.28219 * 19 16 15 22 22 C 1.82377 * 105.88045 * 272.55555 * 19 16 15 23 23 C 1.45423 * 111.00312 * 66.27358 * 13 2 1 24 24 H 1.08992 * 109.46890 * 65.89607 * 1 2 3 25 25 H 1.09000 * 109.47105 * 185.89934 * 1 2 3 26 26 H 1.08993 * 109.47019 * 305.89892 * 1 2 3 27 27 H 1.09004 * 109.47018 * 63.62839 * 4 2 1 28 28 H 1.08993 * 109.47397 * 303.62841 * 4 2 1 29 29 H 0.96999 * 119.99891 * 179.97438 * 8 7 5 30 30 H 1.09000 * 108.27861 * 338.34812 * 14 13 2 31 31 H 1.09001 * 108.27748 * 95.21997 * 14 13 2 32 32 H 1.09002 * 109.36949 * 56.74703 * 15 14 13 33 33 H 1.09002 * 109.37559 * 176.38672 * 15 14 13 34 34 H 1.08996 * 109.46828 * 60.00239 * 18 16 15 35 35 H 1.09007 * 109.47087 * 179.97438 * 18 16 15 36 36 H 1.08994 * 109.46908 * 300.00180 * 18 16 15 37 37 H 1.09000 * 109.21798 * 161.12192 * 22 19 16 38 38 H 1.08994 * 109.22026 * 280.46986 * 22 19 16 39 39 H 1.09000 * 109.57589 * 252.06896 * 23 13 2 40 40 H 1.09010 * 109.57078 * 12.43642 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5444 -0.6438 1.2952 6 1 4.0874 -0.1985 0.4746 7 6 4.2271 -1.1364 2.3870 8 7 3.5654 -1.6733 3.3888 9 14 6.0917 -1.0399 2.4441 10 1 6.5020 0.2393 3.0770 11 1 6.6221 -2.1774 3.2377 12 1 6.6332 -1.1049 1.0629 13 7 2.0198 -0.6925 -1.1994 14 6 1.3723 -2.0036 -1.3519 15 6 2.2196 -3.0625 -1.8682 16 6 2.6813 -2.7197 -3.3101 17 1 1.8219 -2.4011 -3.9001 18 6 3.3082 -3.9591 -3.9520 19 16 3.8914 -1.3978 -3.2590 20 8 4.5627 -1.4675 -2.0086 21 8 4.6626 -1.4644 -4.4507 22 6 2.9359 0.1552 -3.2976 23 6 1.6785 0.0470 -2.4041 24 1 -0.3633 0.4197 -0.9380 25 1 -0.3633 -1.0222 0.1056 26 1 -0.3633 0.6025 0.8324 27 1 1.7307 -1.7659 1.2176 28 1 1.6246 -0.2462 2.1381 29 1 4.0458 -2.0201 4.1568 30 1 0.9935 -2.3132 -0.3779 31 1 0.5215 -1.8886 -2.0234 32 1 3.0930 -3.1725 -1.2254 33 1 1.6615 -3.9987 -1.8802 34 1 2.5717 -4.7618 -3.9872 35 1 3.6322 -3.7191 -4.9648 36 1 4.1666 -4.2792 -3.3617 37 1 3.5628 0.9711 -2.9377 38 1 2.6308 0.3633 -4.3230 39 1 0.8908 -0.4782 -2.9443 40 1 1.3352 1.0459 -2.1345 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582789135.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:46 Heat of formation + Delta-G solvation = -55.921557 kcal Electronic energy + Delta-G solvation = -21544.143051 eV Core-core repulsion = 18486.855198 eV Total energy + Delta-G solvation = -3057.287852 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.27258 -36.37487 -35.50797 -35.04089 -33.23257 -31.76569 -30.38198 -27.96291 -27.21626 -23.67962 -23.45769 -22.25546 -21.52100 -18.90893 -18.09446 -17.00908 -16.24092 -16.05037 -15.34966 -15.07008 -14.84744 -14.39104 -14.03726 -13.59315 -13.47390 -13.04940 -12.89858 -12.62747 -12.19662 -12.13693 -11.85284 -11.66081 -11.59584 -11.37977 -11.31709 -11.17177 -11.04628 -10.77349 -10.54443 -10.30416 -10.27729 -10.19975 -9.90983 -9.82341 -9.15377 -8.88911 -8.13435 -7.96773 -5.76617 -3.72072 0.44182 3.26295 3.51740 3.57791 3.73180 4.03474 4.20106 4.28072 4.66957 4.72458 4.73706 4.97008 5.07928 5.14745 5.35382 5.44979 5.59339 5.60627 5.66589 5.68315 5.71681 5.78341 5.81724 5.83533 5.94568 6.01848 6.06672 6.24906 6.38351 6.51097 6.62789 6.87606 7.35341 7.44493 7.80081 7.90118 8.26766 8.67902 9.37981 9.91087 11.35554 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017260 B = 0.008377 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.846994 B = 3341.564699 C = 4065.432575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.086 3.914 3 H 0.077 0.923 4 C 0.030 3.970 5 C -0.481 4.481 6 H 0.072 0.928 7 C 0.050 3.950 8 N -0.911 5.911 9 Si 0.882 3.118 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.265 1.265 13 N -0.496 5.496 14 C 0.024 3.976 15 C -0.089 4.089 16 C -0.589 4.589 17 H 0.122 0.878 18 C -0.132 4.132 19 S 2.432 3.568 20 O -0.889 6.889 21 O -0.971 6.971 22 C -0.597 4.597 23 C 0.049 3.951 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.016 0.984 28 H 0.023 0.977 29 H 0.255 0.745 30 H 0.088 0.912 31 H 0.038 0.962 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.132 0.868 38 H 0.117 0.883 39 H 0.061 0.939 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.430 -0.262 -14.547 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.021 4.021 3 H 0.095 0.905 4 C -0.007 4.007 5 C -0.520 4.520 6 H 0.090 0.910 7 C -0.148 4.148 8 N -0.553 5.553 9 Si 0.711 3.289 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.189 1.189 13 N -0.220 5.220 14 C -0.104 4.104 15 C -0.127 4.127 16 C -0.697 4.697 17 H 0.140 0.860 18 C -0.191 4.191 19 S 2.612 3.388 20 O -0.886 6.886 21 O -0.968 6.968 22 C -0.727 4.727 23 C -0.082 4.082 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.034 0.966 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.056 0.944 32 H 0.124 0.876 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.151 0.849 38 H 0.135 0.865 39 H 0.079 0.921 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.965 -0.475 -14.289 15.492 hybrid contribution -0.756 0.288 -0.081 0.813 sum -6.722 -0.186 -14.371 15.866 Atomic orbital electron populations 1.22610 0.99113 1.01854 1.00777 1.22137 0.90174 0.98504 0.91333 0.90485 1.19229 0.97053 0.94953 0.89505 1.21273 0.91162 1.36817 1.02705 0.90995 1.24948 0.97895 0.96046 0.95932 1.69968 1.35071 1.42187 1.08047 0.86708 0.86899 0.76911 0.78415 1.21357 1.21845 1.18905 1.63307 1.55190 1.02061 1.01411 1.21112 0.95300 0.91353 1.02610 1.20346 1.03102 0.98809 0.90458 1.30429 1.17275 1.16010 1.06013 0.86022 1.21507 1.01283 0.95386 1.00884 1.07767 0.77657 0.78201 0.75201 1.93690 1.68575 1.84543 1.41790 1.93500 1.66112 1.86760 1.50419 1.30765 1.12256 1.22872 1.06761 1.22363 0.92679 1.01220 0.91903 0.94049 0.92609 0.92238 0.96608 0.95835 0.93603 0.89334 0.94433 0.87575 0.90005 0.90778 0.90956 0.91349 0.84947 0.86495 0.92093 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.76 8.48 37.16 0.31 -2.44 16 2 C 0.09 1.60 2.06 -67.71 -0.14 1.46 16 3 H 0.08 1.46 7.96 -51.93 -0.41 1.05 16 4 C 0.03 0.72 4.40 -27.88 -0.12 0.60 16 5 C -0.48 -13.51 8.81 -34.44 -0.30 -13.81 16 6 H 0.07 2.06 7.71 -52.48 -0.40 1.66 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.91 -27.70 13.29 55.43 0.74 -26.96 16 9 Si 0.88 23.15 29.54 -169.99 -5.02 18.13 16 10 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 11 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 12 H -0.26 -7.08 7.11 56.52 0.40 -6.68 16 13 N -0.50 -8.38 2.95 -231.34 -0.68 -9.06 16 14 C 0.02 0.35 3.37 -7.46 -0.03 0.33 16 15 C -0.09 -1.26 4.87 -29.25 -0.14 -1.40 16 16 C -0.59 -7.30 2.58 -25.55 -0.07 -7.36 16 17 H 0.12 1.11 7.80 -51.75 -0.40 0.71 16 18 C -0.13 -1.51 8.88 37.16 0.33 -1.18 16 19 S 2.43 38.06 4.50 -107.50 -0.48 37.58 16 20 O -0.89 -18.74 15.90 -57.92 -0.92 -19.66 16 21 O -0.97 -17.01 17.19 -57.92 -1.00 -18.00 16 22 C -0.60 -7.52 6.72 38.02 0.26 -7.27 16 23 C 0.05 0.62 4.44 -3.76 -0.02 0.61 16 24 H 0.04 0.51 6.97 -51.93 -0.36 0.15 16 25 H 0.05 0.82 6.62 -51.93 -0.34 0.47 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.02 0.40 6.47 -51.93 -0.34 0.07 16 28 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.09 1.46 4.94 -51.93 -0.26 1.21 16 31 H 0.04 0.44 6.49 -51.93 -0.34 0.10 16 32 H 0.11 1.89 7.23 -51.93 -0.38 1.51 16 33 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.79 7.71 -51.93 -0.40 0.39 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.13 1.71 8.14 -51.93 -0.42 1.28 16 38 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 0.62 6.26 -51.93 -0.33 0.29 16 40 H 0.08 0.95 7.03 -51.92 -0.37 0.58 16 LS Contribution 313.20 15.07 4.72 4.72 Total: -1.00 -35.05 313.20 -9.07 -44.12 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.42 Total: -1.77 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: -0.01 Total: -29.10 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.05 Total: -36.02 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -1.92 Total: -37.66 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Atomic # 16 Polarization: 38.06 SS G_CDS: -0.48 Total: 37.58 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.05 -9.07 -44.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582789135.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.800 kcal (2) G-P(sol) polarization free energy of solvation -35.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds