Wall clock time and date at job start Mon Mar 30 2020 02:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47256 * 2 1 4 4 C 1.53005 * 109.46912 * 119.99328 * 2 1 3 5 5 C 1.50701 * 109.47022 * 183.62640 * 4 2 1 6 6 H 1.08004 * 120.00052 * 355.30519 * 5 4 2 7 7 C 1.37875 * 119.99952 * 175.03257 * 5 4 2 8 8 N 1.31509 * 119.99917 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00058 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47398 * 89.99183 * 9 7 5 11 11 H 1.48494 * 109.47195 * 209.99734 * 9 7 5 12 12 H 1.48502 * 109.46842 * 329.99388 * 9 7 5 13 13 N 1.46896 * 109.47264 * 239.99743 * 2 1 3 14 14 C 1.47015 * 110.99849 * 309.49715 * 13 2 1 15 15 C 1.45111 * 115.50327 * 216.78310 * 14 13 2 16 16 C 1.55231 * 110.05918 * 296.57082 * 15 14 13 17 17 H 1.09007 * 109.43774 * 312.21682 * 16 15 14 18 18 C 1.53007 * 109.43260 * 192.31046 * 16 15 14 19 19 S 1.79284 * 109.70215 * 72.24252 * 16 15 14 20 20 O 1.42094 * 107.92533 * 27.92488 * 19 16 15 21 21 O 1.42098 * 107.93157 * 157.28219 * 19 16 15 22 22 C 1.82377 * 105.88045 * 272.55555 * 19 16 15 23 23 C 1.45423 * 111.00312 * 66.27358 * 13 2 1 24 24 H 1.08992 * 109.46890 * 65.89607 * 1 2 3 25 25 H 1.09000 * 109.47105 * 185.89934 * 1 2 3 26 26 H 1.08993 * 109.47019 * 305.89892 * 1 2 3 27 27 H 1.09004 * 109.47018 * 63.62839 * 4 2 1 28 28 H 1.08993 * 109.47397 * 303.62841 * 4 2 1 29 29 H 0.96999 * 119.99891 * 179.97438 * 8 7 5 30 30 H 1.09000 * 108.27861 * 338.34812 * 14 13 2 31 31 H 1.09001 * 108.27748 * 95.21997 * 14 13 2 32 32 H 1.09002 * 109.36949 * 56.74703 * 15 14 13 33 33 H 1.09002 * 109.37559 * 176.38672 * 15 14 13 34 34 H 1.08996 * 109.46828 * 60.00239 * 18 16 15 35 35 H 1.09007 * 109.47087 * 179.97438 * 18 16 15 36 36 H 1.08994 * 109.46908 * 300.00180 * 18 16 15 37 37 H 1.09000 * 109.21798 * 161.12192 * 22 19 16 38 38 H 1.08994 * 109.22026 * 280.46986 * 22 19 16 39 39 H 1.09000 * 109.57589 * 252.06896 * 23 13 2 40 40 H 1.09010 * 109.57078 * 12.43642 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5444 -0.6438 1.2952 6 1 4.0874 -0.1985 0.4746 7 6 4.2271 -1.1364 2.3870 8 7 3.5654 -1.6733 3.3888 9 14 6.0917 -1.0399 2.4441 10 1 6.5020 0.2393 3.0770 11 1 6.6221 -2.1774 3.2377 12 1 6.6332 -1.1049 1.0629 13 7 2.0198 -0.6925 -1.1994 14 6 1.3723 -2.0036 -1.3519 15 6 2.2196 -3.0625 -1.8682 16 6 2.6813 -2.7197 -3.3101 17 1 1.8219 -2.4011 -3.9001 18 6 3.3082 -3.9591 -3.9520 19 16 3.8914 -1.3978 -3.2590 20 8 4.5627 -1.4675 -2.0086 21 8 4.6626 -1.4644 -4.4507 22 6 2.9359 0.1552 -3.2976 23 6 1.6785 0.0470 -2.4041 24 1 -0.3633 0.4197 -0.9380 25 1 -0.3633 -1.0222 0.1056 26 1 -0.3633 0.6025 0.8324 27 1 1.7307 -1.7659 1.2176 28 1 1.6246 -0.2462 2.1381 29 1 4.0458 -2.0201 4.1568 30 1 0.9935 -2.3132 -0.3779 31 1 0.5215 -1.8886 -2.0234 32 1 3.0930 -3.1725 -1.2254 33 1 1.6615 -3.9987 -1.8802 34 1 2.5717 -4.7618 -3.9872 35 1 3.6322 -3.7191 -4.9648 36 1 4.1666 -4.2792 -3.3617 37 1 3.5628 0.9711 -2.9377 38 1 2.6308 0.3633 -4.3230 39 1 0.8908 -0.4782 -2.9443 40 1 1.3352 1.0459 -2.1345 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582789135.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:46 Heat of formation + Delta-G solvation = -82.358191 kcal Electronic energy + Delta-G solvation = -21545.289429 eV Core-core repulsion = 18486.855198 eV Total energy + Delta-G solvation = -3058.434231 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.48399 -37.65188 -36.79401 -36.28093 -34.99004 -33.38925 -31.47814 -29.50549 -28.65706 -25.22764 -24.69638 -23.46510 -22.89424 -20.24919 -19.27427 -18.28298 -18.11357 -17.46872 -16.54200 -16.51307 -16.13050 -16.09956 -15.22772 -14.79203 -14.66367 -14.29366 -14.19150 -13.71140 -13.61370 -13.55796 -13.20190 -13.08771 -13.04132 -12.70584 -12.62414 -12.52033 -12.48814 -12.38288 -12.28549 -11.98234 -11.66925 -11.40230 -11.25296 -11.02660 -10.92627 -10.87240 -10.39787 -9.15501 -8.04496 -6.03144 -0.69763 1.37045 1.39900 1.57512 2.16936 2.53062 2.93472 3.04698 3.19115 3.32303 3.67970 3.74949 3.99619 4.03115 4.13782 4.30834 4.40053 4.46648 4.57276 4.62991 4.70625 4.77562 4.78673 4.81401 4.90889 4.95345 5.04588 5.12384 5.18926 5.30250 5.33177 5.45948 5.57786 5.81484 5.99314 6.29955 6.34791 6.57767 7.13110 7.62177 9.07482 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017260 B = 0.008377 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.846994 B = 3341.564699 C = 4065.432575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 H 0.068 0.932 4 C 0.034 3.966 5 C -0.479 4.479 6 H 0.059 0.941 7 C -0.003 4.003 8 N -0.941 5.941 9 Si 0.933 3.067 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.531 5.531 14 C 0.019 3.981 15 C -0.089 4.089 16 C -0.563 4.563 17 H 0.173 0.827 18 C -0.140 4.140 19 S 2.408 3.592 20 O -0.965 6.965 21 O -1.003 7.003 22 C -0.578 4.578 23 C 0.042 3.958 24 H 0.079 0.921 25 H 0.057 0.943 26 H 0.054 0.946 27 H -0.001 1.001 28 H -0.004 1.004 29 H 0.255 0.745 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.124 0.876 38 H 0.163 0.837 39 H 0.106 0.894 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.006 0.159 -17.276 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.012 4.012 3 H 0.086 0.914 4 C -0.003 4.003 5 C -0.517 4.517 6 H 0.078 0.922 7 C -0.198 4.198 8 N -0.585 5.585 9 Si 0.760 3.240 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.254 5.254 14 C -0.108 4.108 15 C -0.128 4.128 16 C -0.675 4.675 17 H 0.191 0.809 18 C -0.198 4.198 19 S 2.595 3.405 20 O -0.962 6.962 21 O -1.000 7.000 22 C -0.711 4.711 23 C -0.088 4.088 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.017 0.983 28 H 0.015 0.985 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.143 0.857 38 H 0.181 0.819 39 H 0.124 0.876 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.488 -0.046 -17.019 19.019 hybrid contribution 0.005 0.144 0.703 0.718 sum -8.483 0.097 -16.316 18.390 Atomic orbital electron populations 1.22471 0.95714 1.02353 1.02688 1.21749 0.92766 0.97002 0.89715 0.91355 1.19088 0.94752 0.94515 0.91935 1.21587 0.93429 1.35115 1.01603 0.92246 1.25621 1.01369 0.96556 0.96213 1.70057 1.36195 1.43636 1.08602 0.85916 0.83029 0.77512 0.77512 1.20005 1.21242 1.20389 1.63088 1.56758 1.03379 1.02219 1.21220 0.96590 0.90440 1.02531 1.20332 1.01470 1.00279 0.90728 1.30157 1.17305 1.14388 1.05605 0.80930 1.21640 1.01548 0.95924 1.00737 1.08006 0.79052 0.80170 0.73267 1.93620 1.71998 1.86179 1.44359 1.93451 1.68537 1.87647 1.50383 1.30582 1.11526 1.19381 1.09612 1.22594 0.93550 1.02163 0.90456 0.90226 0.92363 0.92646 0.98263 0.98541 0.93665 0.91814 0.89536 0.92594 0.87077 0.87687 0.90240 0.93366 0.85737 0.81941 0.87583 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.66 8.48 71.98 0.61 -4.05 16 2 C 0.10 3.47 2.06 44.92 0.09 3.56 16 3 H 0.07 2.55 7.96 -2.39 -0.02 2.53 16 4 C 0.03 1.72 4.40 29.85 0.13 1.85 16 5 C -0.48 -27.95 8.81 25.60 0.23 -27.72 16 6 H 0.06 3.57 7.71 -2.91 -0.02 3.55 16 7 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 8 N -0.94 -59.17 13.29 21.45 0.28 -58.88 16 9 Si 0.93 49.36 29.54 68.60 2.03 51.39 16 10 H -0.27 -13.83 7.11 99.48 0.71 -13.12 16 11 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 12 H -0.28 -15.26 7.11 99.48 0.71 -14.55 16 13 N -0.53 -16.89 2.95 -885.82 -2.61 -19.50 16 14 C 0.02 0.52 3.37 83.88 0.28 0.80 16 15 C -0.09 -2.38 4.87 28.96 0.14 -2.24 16 16 C -0.56 -12.15 2.58 31.36 0.08 -12.06 16 17 H 0.17 1.98 7.80 -2.50 -0.02 1.97 16 18 C -0.14 -2.88 8.88 71.98 0.64 -2.24 16 19 S 2.41 73.41 4.50 -56.49 -0.25 73.16 16 20 O -0.96 -42.78 15.90 -127.29 -2.02 -44.80 16 21 O -1.00 -34.75 17.19 -127.29 -2.19 -36.94 16 22 C -0.58 -12.56 6.72 72.54 0.49 -12.08 16 23 C 0.04 0.87 4.44 87.14 0.39 1.26 16 24 H 0.08 1.55 6.97 -2.39 -0.02 1.53 16 25 H 0.06 1.54 6.62 -2.39 -0.02 1.53 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.00 -0.04 6.47 -2.38 -0.02 -0.06 16 28 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.06 2.03 4.94 -2.39 -0.01 2.02 16 31 H 0.09 1.47 6.49 -2.39 -0.02 1.45 16 32 H 0.06 2.08 7.23 -2.39 -0.02 2.06 16 33 H 0.11 2.28 8.10 -2.39 -0.02 2.26 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 1.53 7.71 -2.38 -0.02 1.52 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.16 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.11 1.30 6.26 -2.39 -0.01 1.28 16 40 H 0.09 1.75 7.03 -2.38 -0.02 1.73 16 Total: -1.00 -82.85 313.20 -0.22 -83.07 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 1.01 Total: 5.12 kcal Atomic # 6 Polarization: -56.16 SS G_CDS: 3.54 Total: -52.62 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -2.33 Total: -78.39 kcal Atomic # 8 Polarization: -77.53 SS G_CDS: -4.21 Total: -81.74 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.03 Total: 51.39 kcal Atomic # 16 Polarization: 73.41 SS G_CDS: -0.25 Total: 73.16 kcal Total: -82.85 -0.22 -83.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582789135.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.709 kcal (2) G-P(sol) polarization free energy of solvation -82.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds