Wall clock time and date at job start Mon Mar 30 2020 02:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 110.66450 * 2 1 4 4 C 1.54698 * 110.74872 * 123.20579 * 2 1 3 5 5 C 1.51671 * 101.91732 * 93.22263 * 4 2 1 6 6 C 1.37312 * 132.05720 * 195.96109 * 5 4 2 7 7 C 1.39806 * 119.86000 * 179.28877 * 6 5 4 8 8 C 1.47604 * 120.26620 * 179.71831 * 7 6 5 9 9 O 1.21580 * 119.99939 * 20.02622 * 8 7 6 10 10 N 1.34776 * 120.00146 * 200.02224 * 8 7 6 11 11 C 1.46504 * 119.99580 * 7.16421 * 10 8 7 12 12 C 1.46500 * 120.00292 * 187.17065 * 10 8 7 13 13 C 1.50708 * 109.46471 * 269.99922 * 12 10 8 14 14 H 1.07994 * 120.00109 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99218 * 180.02562 * 13 12 10 16 16 N 1.31519 * 119.99371 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 120.00599 * 359.97438 * 15 13 12 18 18 H 1.48509 * 109.47334 * 270.00362 * 17 15 13 19 19 H 1.48501 * 109.47186 * 30.00096 * 17 15 13 20 20 H 1.48494 * 109.47546 * 150.00497 * 17 15 13 21 21 C 1.39759 * 119.46738 * 359.44024 * 7 6 5 22 22 C 1.37467 * 120.20026 * 0.46834 * 21 7 6 23 23 C 1.39182 * 107.00726 * 15.15663 * 5 4 2 24 24 O 1.36002 * 111.15390 * 1.46115 * 23 5 4 25 25 H 1.09009 * 109.46881 * 296.79031 * 1 2 3 26 26 H 1.08997 * 109.47267 * 56.79061 * 1 2 3 27 27 H 1.09001 * 109.47035 * 176.79805 * 1 2 3 28 28 H 1.08995 * 110.94045 * 335.06676 * 4 2 1 29 29 H 1.09004 * 110.96916 * 211.38876 * 4 2 1 30 30 H 1.08000 * 120.07082 * 359.00069 * 6 5 4 31 31 H 1.08996 * 109.47160 * 267.21311 * 11 10 8 32 32 H 1.08996 * 109.47500 * 27.22162 * 11 10 8 33 33 H 1.09007 * 109.46688 * 147.21796 * 11 10 8 34 34 H 1.08994 * 109.47226 * 150.00296 * 12 10 8 35 35 H 1.08996 * 109.47116 * 29.99408 * 12 10 8 36 36 H 0.96996 * 119.99700 * 179.97438 * 16 15 13 37 37 H 1.08000 * 119.89902 * 180.44265 * 21 7 6 38 38 H 1.08004 * 119.78429 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0200 0.0000 4 6 2.0780 -0.7923 1.2104 5 6 2.2670 -2.1762 0.6193 6 6 2.4490 -3.4073 1.1997 7 6 2.5848 -4.5427 0.3954 8 6 2.7870 -5.8696 1.0095 9 8 2.4811 -6.0546 2.1716 10 7 3.3106 -6.8762 0.2822 11 6 3.8239 -6.6162 -1.0652 12 6 3.3665 -8.2302 0.8387 13 6 4.6696 -8.4184 1.5720 14 1 5.3847 -7.6105 1.6184 15 6 4.9491 -9.6226 2.1827 16 7 6.0865 -9.7870 2.8222 17 14 3.7125 -11.0202 2.1018 18 1 2.7877 -10.9307 3.2604 19 1 2.9359 -10.9217 0.8399 20 1 4.4305 -12.3194 2.1410 21 6 2.5217 -4.4122 -0.9947 22 6 2.3373 -3.1752 -1.5654 23 6 2.2112 -2.0389 -0.7646 24 8 2.0428 -0.7376 -1.1223 25 1 -0.3633 0.4632 0.9174 26 1 -0.3633 0.5628 -0.8598 27 1 -0.3633 -1.0261 -0.0574 28 1 1.3528 -0.8118 2.0239 29 1 3.0287 -0.3799 1.5484 30 1 2.4917 -3.4976 2.2750 31 1 3.0360 -6.7993 -1.7957 32 1 4.1509 -5.5788 -1.1356 33 1 4.6669 -7.2773 -1.2666 34 1 3.2958 -8.9583 0.0307 35 1 2.5364 -8.3732 1.5304 36 1 6.2830 -10.6340 3.2521 37 1 2.6186 -5.2857 -1.6224 38 1 2.2892 -3.0821 -2.6403 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596912044.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:09 Heat of formation + Delta-G solvation = -16.128291 kcal Electronic energy + Delta-G solvation = -20888.228731 eV Core-core repulsion = 17697.222493 eV Total energy + Delta-G solvation = -3191.006238 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.38845 -39.44810 -36.93013 -35.12138 -33.33565 -32.60676 -31.11289 -30.30674 -28.53596 -26.83651 -26.25225 -23.79740 -22.06899 -21.77113 -21.66090 -18.99762 -17.39247 -17.12724 -16.94035 -16.13451 -16.01834 -15.34552 -14.77570 -14.27709 -14.22036 -13.89315 -13.64913 -13.48999 -13.27650 -12.83767 -12.62029 -12.49922 -12.40618 -12.29298 -12.20924 -11.71621 -11.49389 -11.26921 -11.02420 -10.78435 -10.63019 -10.49513 -10.14231 -9.54026 -9.12742 -8.91786 -8.57657 -8.16679 -7.71209 -6.07040 -4.05754 1.00562 1.31613 2.99450 3.26898 3.29928 3.35757 3.37477 3.73412 4.07230 4.20260 4.40042 4.40984 4.59170 4.78068 4.87699 4.91770 5.05022 5.21961 5.25041 5.29707 5.37569 5.48934 5.58772 5.61147 5.66492 5.71679 5.79855 5.98009 6.14161 6.15970 6.31350 6.40082 6.48246 6.70874 6.92130 7.07357 7.31693 7.61401 8.20862 8.47909 8.91973 8.98585 9.52717 11.06489 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.039427 B = 0.003864 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.997950 B = 7245.492024 C = 7471.844995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.076 3.924 3 H 0.115 0.885 4 C -0.105 4.105 5 C -0.186 4.186 6 C -0.014 4.014 7 C -0.149 4.149 8 C 0.551 3.449 9 O -0.534 6.534 10 N -0.591 5.591 11 C 0.070 3.930 12 C 0.217 3.783 13 C -0.528 4.528 14 H 0.075 0.925 15 C 0.071 3.929 16 N -0.898 5.898 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.266 1.266 20 H -0.285 1.285 21 C -0.076 4.076 22 C -0.149 4.149 23 C 0.119 3.881 24 O -0.300 6.300 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.136 0.864 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.032 0.968 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.160 0.840 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.902 18.061 -9.803 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.020 3.980 3 H 0.133 0.867 4 C -0.142 4.142 5 C -0.187 4.187 6 C -0.033 4.033 7 C -0.152 4.152 8 C 0.339 3.661 9 O -0.412 6.412 10 N -0.323 5.323 11 C -0.073 4.073 12 C 0.096 3.904 13 C -0.566 4.566 14 H 0.093 0.907 15 C -0.131 4.131 16 N -0.536 5.536 17 Si 0.704 3.296 18 H -0.199 1.199 19 H -0.191 1.191 20 H -0.211 1.211 21 C -0.093 4.093 22 C -0.168 4.168 23 C 0.074 3.926 24 O -0.214 6.214 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.154 0.846 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.177 0.823 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.912 17.906 -9.291 22.477 hybrid contribution -0.416 -0.752 0.177 0.877 sum -10.328 17.155 -9.115 22.001 Atomic orbital electron populations 1.22252 0.94181 1.03446 1.03003 1.23427 0.94729 0.96334 0.83482 0.86713 1.21847 1.02751 0.91233 0.98320 1.20613 1.09002 0.95246 0.93814 1.20362 0.93193 0.89121 1.00606 1.20020 1.07164 0.94392 0.93640 1.18020 0.78699 0.83558 0.85871 1.90757 1.51944 1.82671 1.15862 1.47698 1.58845 1.10228 1.15481 1.22253 0.98976 1.02304 0.83754 1.19696 0.98643 0.77595 0.94432 1.21329 1.01740 1.00139 1.33414 0.90693 1.24868 0.95251 0.98363 0.94593 1.69902 1.23208 1.25425 1.35075 0.86845 0.81709 0.81833 0.79256 1.19901 1.19055 1.21058 1.22100 0.94732 0.97900 0.94609 1.20200 1.07672 0.89189 0.99735 1.19825 0.95089 0.84835 0.92874 1.86837 1.79615 1.16702 1.38260 0.90606 0.91419 0.91678 0.88877 0.89040 0.84647 0.92985 0.90694 0.90515 0.94990 0.94579 0.92572 0.82271 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 9.51 37.16 0.35 -0.92 16 2 C 0.08 0.66 4.30 -25.84 -0.11 0.55 16 3 H 0.12 0.71 8.14 -51.92 -0.42 0.29 16 4 C -0.10 -0.99 6.65 -26.51 -0.18 -1.17 16 5 C -0.19 -2.44 6.25 -104.13 -0.65 -3.09 16 6 C -0.01 -0.22 9.57 -39.33 -0.38 -0.59 16 7 C -0.15 -2.51 5.57 -104.92 -0.58 -3.10 16 8 C 0.55 11.83 7.51 -12.44 -0.09 11.74 16 9 O -0.53 -13.67 16.19 5.30 0.09 -13.58 16 10 N -0.59 -12.45 2.86 -184.17 -0.53 -12.97 16 11 C 0.07 1.08 8.65 59.85 0.52 1.60 16 12 C 0.22 5.34 4.19 -5.19 -0.02 5.32 16 13 C -0.53 -15.37 9.94 -34.44 -0.34 -15.71 16 14 H 0.07 2.41 8.06 -52.49 -0.42 1.98 16 15 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 16 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 17 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 18 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 C -0.08 -1.02 7.60 -39.29 -0.30 -1.32 16 22 C -0.15 -1.83 10.05 -39.36 -0.40 -2.23 16 23 C 0.12 1.55 6.91 -38.73 -0.27 1.28 16 24 O -0.30 -3.57 10.82 -19.75 -0.21 -3.78 16 25 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 28 H 0.09 0.76 7.92 -51.93 -0.41 0.35 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.14 2.16 7.79 -52.49 -0.41 1.75 16 31 H 0.05 0.63 6.93 -51.93 -0.36 0.27 16 32 H 0.07 1.03 5.35 -51.93 -0.28 0.75 16 33 H 0.08 1.22 8.09 -51.92 -0.42 0.80 16 34 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 35 H 0.04 0.94 6.96 -51.93 -0.36 0.58 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 37 H 0.16 1.85 4.03 -52.49 -0.21 1.64 16 38 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 313.49 15.07 4.72 4.72 Total: -1.00 -35.23 313.49 -7.31 -42.55 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.94 Total: -1.09 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -2.55 Total: -5.63 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.25 Total: -40.13 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.13 Total: -17.37 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.23 -7.31 -42.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596912044.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.418 kcal (2) G-P(sol) polarization free energy of solvation -35.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds