Wall clock time and date at job start Mon Mar 30 2020 02:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.55174 * 2 1 4 4 C 1.53292 * 109.51170 * 120.12815 * 2 1 3 5 5 N 1.47158 * 108.38648 * 172.22731 * 4 2 1 6 6 C 1.34772 * 120.98303 * 129.44150 * 5 4 2 7 7 O 1.21609 * 119.99932 * 354.26021 * 6 5 4 8 8 C 1.47437 * 119.99820 * 174.26795 * 6 5 4 9 9 C 1.39228 * 120.27784 * 315.15412 * 8 6 5 10 10 C 1.38217 * 120.08606 * 179.97438 * 9 8 6 11 11 C 1.38822 * 120.68145 * 359.97330 * 10 9 8 12 12 C 1.37603 * 120.56809 * 0.02562 * 11 10 9 13 13 C 1.40702 * 119.87905 * 0.02562 * 12 11 10 14 14 C 1.40898 * 120.32478 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99790 * 149.71820 * 14 13 12 16 16 C 1.40272 * 119.99786 * 329.71962 * 14 13 12 17 17 N 1.30623 * 120.00311 * 344.96475 * 16 14 13 18 18 Si 1.86804 * 119.99508 * 164.96599 * 16 14 13 19 19 H 1.48500 * 109.47453 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.46914 * 120.00180 * 18 16 14 21 21 H 1.48501 * 109.46988 * 239.99806 * 18 16 14 22 22 C 1.47151 * 118.03199 * 309.71379 * 5 4 2 23 23 C 1.52881 * 108.60710 * 50.22594 * 22 5 4 24 24 O 1.42963 * 109.30057 * 307.93287 * 23 22 5 25 25 H 1.09001 * 109.46918 * 299.87218 * 1 2 3 26 26 H 1.08998 * 109.47404 * 59.87507 * 1 2 3 27 27 H 1.09009 * 109.47098 * 179.87370 * 1 2 3 28 28 H 1.09004 * 109.68687 * 52.50104 * 4 2 1 29 29 H 1.09009 * 109.68370 * 291.94948 * 4 2 1 30 30 H 1.08000 * 119.95421 * 0.02562 * 9 8 6 31 31 H 1.08000 * 119.65970 * 180.02562 * 10 9 8 32 32 H 1.07996 * 119.71955 * 179.74943 * 11 10 9 33 33 H 1.08001 * 120.05874 * 179.97438 * 12 11 10 34 34 H 0.97005 * 120.00094 * 179.97438 * 17 16 14 35 35 H 1.08999 * 109.67938 * 170.00652 * 22 5 4 36 36 H 1.09003 * 109.68533 * 290.56140 * 22 5 4 37 37 H 1.08996 * 109.58047 * 187.92291 * 23 22 5 38 38 H 1.08999 * 109.40846 * 67.83929 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0420 -0.7252 1.2497 5 7 3.5012 -0.8762 1.1336 6 6 4.3193 -0.5034 2.1376 7 8 3.8651 0.0608 3.1144 8 6 5.7650 -0.7796 2.0516 9 6 6.2176 -2.0255 1.6255 10 6 7.5738 -2.2799 1.5459 11 6 8.4991 -1.3028 1.8870 12 6 8.0823 -0.0620 2.3115 13 6 6.7073 0.2223 2.4024 14 6 6.2700 1.4894 2.8365 15 1 5.3369 1.8928 2.4718 16 6 7.0468 2.2270 3.7422 17 7 8.0073 1.6419 4.4066 18 14 6.7074 4.0460 3.9982 19 1 5.5751 4.4649 3.1335 20 1 6.3592 4.2891 5.4213 21 1 7.9179 4.8300 3.6440 22 6 4.0410 -1.4406 -0.1136 23 6 3.4312 -0.6855 -1.2948 24 8 2.0075 -0.6764 -1.1655 25 1 -0.3633 0.5119 0.8911 26 1 -0.3634 0.5158 -0.8888 27 1 -0.3634 -1.0277 -0.0023 28 1 1.5758 -1.7080 1.3208 29 1 1.8030 -0.1399 2.1377 30 1 5.5080 -2.7937 1.3561 31 1 7.9172 -3.2486 1.2141 32 1 9.5551 -1.5197 1.8228 33 1 8.8092 0.6919 2.5752 34 1 8.5446 2.1521 5.0326 35 1 5.1251 -1.3288 -0.1280 36 1 3.7794 -2.4966 -0.1821 37 1 3.7090 -1.1787 -2.2262 38 1 3.8028 0.3392 -1.3004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600982179.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:42 Heat of formation + Delta-G solvation = -59.286922 kcal Electronic energy + Delta-G solvation = -21710.855388 eV Core-core repulsion = 18517.977651 eV Total energy + Delta-G solvation = -3192.877737 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.90201 -38.15577 -36.71418 -34.31539 -33.64519 -32.87602 -30.11134 -29.63568 -28.49149 -26.36235 -25.20671 -23.20618 -22.17611 -21.02560 -20.65783 -18.71983 -17.31572 -16.57222 -16.38695 -15.61588 -15.41691 -15.03111 -14.77264 -14.39988 -14.25580 -13.74869 -13.28966 -12.81600 -12.62206 -12.51984 -12.43857 -12.16106 -11.78638 -11.65662 -11.56216 -11.20521 -11.15832 -11.03299 -10.84087 -10.53088 -10.46567 -10.00232 -9.90574 -9.64083 -9.29367 -8.73054 -8.04370 -7.57160 -7.49373 -6.87938 -4.46320 2.41531 2.75077 3.04970 3.11946 3.15808 3.46990 3.82072 3.89395 3.91102 4.54766 4.83768 5.10417 5.16342 5.22750 5.33804 5.49438 5.52116 5.61792 5.71049 5.75215 5.90726 5.97691 6.00723 6.04916 6.10924 6.19829 6.29565 6.51107 6.91937 7.00331 7.05483 7.15818 7.25247 7.39864 7.62151 7.79198 7.91510 8.06396 8.16658 8.49936 8.72709 8.80237 9.17589 10.07634 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.016931 B = 0.006760 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.362422 B = 4140.761465 C = 5269.240418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 H 0.062 0.938 4 C 0.086 3.914 5 N -0.628 5.628 6 C 0.583 3.417 7 O -0.535 6.535 8 C -0.258 4.258 9 C -0.059 4.059 10 C -0.247 4.247 11 C -0.092 4.092 12 C -0.155 4.155 13 C 0.148 3.852 14 C -0.429 4.429 15 H 0.082 0.918 16 C 0.077 3.923 17 N -0.783 5.783 18 Si 0.911 3.089 19 H -0.259 1.259 20 H -0.272 1.272 21 H -0.271 1.271 22 C 0.075 3.925 23 C 0.048 3.952 24 O -0.383 6.383 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.283 0.717 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.735 -2.427 -8.382 11.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.014 3.986 3 H 0.080 0.920 4 C -0.037 4.037 5 N -0.364 5.364 6 C 0.376 3.624 7 O -0.412 6.412 8 C -0.263 4.263 9 C -0.077 4.077 10 C -0.267 4.267 11 C -0.111 4.111 12 C -0.174 4.174 13 C 0.144 3.856 14 C -0.457 4.457 15 H 0.100 0.900 16 C -0.142 4.142 17 N -0.408 5.408 18 Si 0.735 3.265 19 H -0.183 1.183 20 H -0.197 1.197 21 H -0.196 1.196 22 C -0.048 4.048 23 C -0.030 4.030 24 O -0.303 6.303 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.135 0.865 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.919 -2.150 -7.756 10.613 hybrid contribution 0.184 0.712 0.413 0.844 sum -6.735 -1.438 -7.343 10.067 Atomic orbital electron populations 1.21710 0.92683 1.02897 1.02552 1.22476 0.95068 0.95606 0.85416 0.92004 1.22138 0.81554 1.00887 0.99157 1.48202 1.05619 1.65773 1.16844 1.18588 0.86580 0.76098 0.81110 1.90682 1.77089 1.41463 1.31949 1.19373 0.90536 0.96348 1.20026 1.20658 0.95024 0.94833 0.97233 1.20266 0.92867 0.99147 1.14408 1.20788 0.97284 0.94236 0.98776 1.21263 0.95847 0.96557 1.03737 1.17380 0.90529 0.91195 0.86452 1.19645 1.05217 1.00055 1.20792 0.90024 1.25982 0.93395 1.00769 0.94101 1.69722 1.15655 1.37736 1.17662 0.86197 0.79486 0.81561 0.79209 1.18257 1.19698 1.19594 1.22394 1.01426 0.97158 0.83851 1.22930 0.80952 1.00573 0.98501 1.87885 1.21264 1.77606 1.43498 0.90855 0.91763 0.91761 0.91724 0.88470 0.88909 0.89028 0.89052 0.86530 0.90562 0.87268 0.91694 0.88014 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.57 37.16 0.36 -1.16 16 2 C 0.07 1.02 3.40 -26.58 -0.09 0.93 16 3 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 4 C 0.09 1.39 5.94 -3.53 -0.02 1.37 16 5 N -0.63 -11.82 3.03 -173.78 -0.53 -12.35 16 6 C 0.58 13.73 6.67 -12.52 -0.08 13.64 16 7 O -0.54 -14.39 15.02 5.27 0.08 -14.31 16 8 C -0.26 -6.27 4.99 -104.37 -0.52 -6.79 16 9 C -0.06 -1.25 7.52 -39.22 -0.29 -1.55 16 10 C -0.25 -5.18 10.03 -39.37 -0.39 -5.58 16 11 C -0.09 -2.04 10.01 -39.60 -0.40 -2.44 16 12 C -0.15 -3.87 8.65 -38.88 -0.34 -4.20 16 13 C 0.15 3.92 5.53 -106.54 -0.59 3.33 16 14 C -0.43 -11.63 7.77 -37.81 -0.29 -11.92 16 15 H 0.08 2.27 6.99 -52.49 -0.37 1.90 16 16 C 0.08 1.96 5.16 -17.30 -0.09 1.87 16 17 N -0.78 -20.24 11.19 55.56 0.62 -19.61 16 18 Si 0.91 19.21 29.59 -169.99 -5.03 14.18 16 19 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 C 0.08 1.17 5.18 -3.75 -0.02 1.15 16 23 C 0.05 0.65 6.97 37.10 0.26 0.91 16 24 O -0.38 -5.57 10.39 -35.23 -0.37 -5.94 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.10 1.69 7.06 -51.92 -0.37 1.32 16 30 H 0.09 1.74 7.04 -52.49 -0.37 1.37 16 31 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.12 2.97 6.50 -52.49 -0.34 2.63 16 34 H 0.28 6.59 8.29 -40.82 -0.34 6.26 16 35 H 0.11 1.82 5.25 -51.93 -0.27 1.55 16 36 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 37 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 310.28 15.07 4.68 4.68 Total: -1.00 -30.12 310.28 -8.14 -38.26 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.08 Total: 5.51 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -2.52 Total: -10.42 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.10 Total: -31.96 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.29 Total: -20.25 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.12 -8.14 -38.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600982179.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.030 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds