Wall clock time and date at job start Mon Mar 30 2020 02:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.55174 * 2 1 4 4 C 1.53292 * 109.51170 * 120.12815 * 2 1 3 5 5 N 1.47158 * 108.38648 * 172.22731 * 4 2 1 6 6 C 1.34772 * 120.98303 * 129.44150 * 5 4 2 7 7 O 1.21609 * 119.99932 * 354.26021 * 6 5 4 8 8 C 1.47437 * 119.99820 * 174.26795 * 6 5 4 9 9 C 1.39228 * 120.27784 * 315.15412 * 8 6 5 10 10 C 1.38217 * 120.08606 * 179.97438 * 9 8 6 11 11 C 1.38822 * 120.68145 * 359.97330 * 10 9 8 12 12 C 1.37603 * 120.56809 * 0.02562 * 11 10 9 13 13 C 1.40702 * 119.87905 * 0.02562 * 12 11 10 14 14 C 1.40898 * 120.32478 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99790 * 149.71820 * 14 13 12 16 16 C 1.40272 * 119.99786 * 329.71962 * 14 13 12 17 17 N 1.30623 * 120.00311 * 344.96475 * 16 14 13 18 18 Si 1.86804 * 119.99508 * 164.96599 * 16 14 13 19 19 H 1.48500 * 109.47453 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.46914 * 120.00180 * 18 16 14 21 21 H 1.48501 * 109.46988 * 239.99806 * 18 16 14 22 22 C 1.47151 * 118.03199 * 309.71379 * 5 4 2 23 23 C 1.52881 * 108.60710 * 50.22594 * 22 5 4 24 24 O 1.42963 * 109.30057 * 307.93287 * 23 22 5 25 25 H 1.09001 * 109.46918 * 299.87218 * 1 2 3 26 26 H 1.08998 * 109.47404 * 59.87507 * 1 2 3 27 27 H 1.09009 * 109.47098 * 179.87370 * 1 2 3 28 28 H 1.09004 * 109.68687 * 52.50104 * 4 2 1 29 29 H 1.09009 * 109.68370 * 291.94948 * 4 2 1 30 30 H 1.08000 * 119.95421 * 0.02562 * 9 8 6 31 31 H 1.08000 * 119.65970 * 180.02562 * 10 9 8 32 32 H 1.07996 * 119.71955 * 179.74943 * 11 10 9 33 33 H 1.08001 * 120.05874 * 179.97438 * 12 11 10 34 34 H 0.97005 * 120.00094 * 179.97438 * 17 16 14 35 35 H 1.08999 * 109.67938 * 170.00652 * 22 5 4 36 36 H 1.09003 * 109.68533 * 290.56140 * 22 5 4 37 37 H 1.08996 * 109.58047 * 187.92291 * 23 22 5 38 38 H 1.08999 * 109.40846 * 67.83929 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0420 -0.7252 1.2497 5 7 3.5012 -0.8762 1.1336 6 6 4.3193 -0.5034 2.1376 7 8 3.8651 0.0608 3.1144 8 6 5.7650 -0.7796 2.0516 9 6 6.2176 -2.0255 1.6255 10 6 7.5738 -2.2799 1.5459 11 6 8.4991 -1.3028 1.8870 12 6 8.0823 -0.0620 2.3115 13 6 6.7073 0.2223 2.4024 14 6 6.2700 1.4894 2.8365 15 1 5.3369 1.8928 2.4718 16 6 7.0468 2.2270 3.7422 17 7 8.0073 1.6419 4.4066 18 14 6.7074 4.0460 3.9982 19 1 5.5751 4.4649 3.1335 20 1 6.3592 4.2891 5.4213 21 1 7.9179 4.8300 3.6440 22 6 4.0410 -1.4406 -0.1136 23 6 3.4312 -0.6855 -1.2948 24 8 2.0075 -0.6764 -1.1655 25 1 -0.3633 0.5119 0.8911 26 1 -0.3634 0.5158 -0.8888 27 1 -0.3634 -1.0277 -0.0023 28 1 1.5758 -1.7080 1.3208 29 1 1.8030 -0.1399 2.1377 30 1 5.5080 -2.7937 1.3561 31 1 7.9172 -3.2486 1.2141 32 1 9.5551 -1.5197 1.8228 33 1 8.8092 0.6919 2.5752 34 1 8.5446 2.1521 5.0326 35 1 5.1251 -1.3288 -0.1280 36 1 3.7794 -2.4966 -0.1821 37 1 3.7090 -1.1787 -2.2262 38 1 3.8028 0.3392 -1.3004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600982179.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:41 Heat of formation + Delta-G solvation = -77.808873 kcal Electronic energy + Delta-G solvation = -21711.658560 eV Core-core repulsion = 18517.977651 eV Total energy + Delta-G solvation = -3193.680909 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.40435 -39.67842 -38.48365 -35.94702 -35.40049 -34.00931 -31.92019 -31.41785 -29.70496 -27.87712 -26.91727 -24.52245 -23.70014 -22.83508 -22.00483 -20.34471 -19.16621 -18.16829 -17.66793 -17.27738 -16.95778 -16.46363 -16.20023 -15.91636 -15.68694 -15.37705 -14.89157 -14.51022 -14.19169 -14.08766 -13.71288 -13.54246 -13.18959 -13.10699 -12.98527 -12.85188 -12.65215 -12.55949 -12.26741 -12.18278 -11.84383 -11.70803 -11.48380 -11.16356 -11.10301 -10.53377 -9.58657 -9.34772 -9.31802 -8.74234 -6.42483 0.59137 0.97499 1.29854 1.43894 1.44818 1.93749 2.15023 2.16536 2.67227 2.73872 3.62460 3.65816 3.85099 4.00377 4.06387 4.17637 4.23500 4.37639 4.45276 4.52781 4.59807 4.67622 4.72150 4.84060 4.88073 4.91413 4.99115 5.05342 5.18902 5.24306 5.31045 5.52505 5.60902 5.83422 5.95647 6.07548 6.11050 6.24947 6.43695 6.61337 6.82530 6.91170 7.41138 8.24011 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.016931 B = 0.006760 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.362422 B = 4140.761465 C = 5269.240418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.076 3.924 3 H 0.045 0.955 4 C 0.082 3.918 5 N -0.623 5.623 6 C 0.576 3.424 7 O -0.584 6.584 8 C -0.273 4.273 9 C -0.055 4.055 10 C -0.233 4.233 11 C -0.089 4.089 12 C -0.180 4.180 13 C 0.118 3.882 14 C -0.468 4.468 15 H 0.056 0.944 16 C 0.038 3.962 17 N -0.816 5.816 18 Si 0.975 3.025 19 H -0.268 1.268 20 H -0.267 1.267 21 H -0.250 1.250 22 C 0.071 3.929 23 C 0.050 3.950 24 O -0.383 6.383 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.124 0.876 31 H 0.133 0.867 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.292 0.708 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.139 0.861 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.168 -4.138 -10.147 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.017 3.983 3 H 0.063 0.937 4 C -0.040 4.040 5 N -0.358 5.358 6 C 0.369 3.631 7 O -0.465 6.465 8 C -0.278 4.278 9 C -0.073 4.073 10 C -0.252 4.252 11 C -0.108 4.108 12 C -0.199 4.199 13 C 0.114 3.886 14 C -0.497 4.497 15 H 0.075 0.925 16 C -0.178 4.178 17 N -0.441 5.441 18 Si 0.796 3.204 19 H -0.192 1.192 20 H -0.192 1.192 21 H -0.174 1.174 22 C -0.051 4.051 23 C -0.027 4.027 24 O -0.302 6.302 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.142 0.858 31 H 0.151 0.849 32 H 0.139 0.861 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.157 0.843 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.356 -3.894 -9.578 12.689 hybrid contribution 0.300 1.026 0.850 1.365 sum -7.057 -2.868 -8.728 11.585 Atomic orbital electron populations 1.21706 0.89814 1.03982 1.03647 1.22501 0.97209 0.94247 0.84313 0.93732 1.22356 0.79979 1.02050 0.99658 1.48206 1.06513 1.64340 1.16701 1.18643 0.86969 0.75974 0.81513 1.90641 1.77856 1.43771 1.34231 1.19679 0.90950 0.97246 1.19899 1.20971 0.96157 0.94134 0.96046 1.20760 0.92312 1.00262 1.11905 1.21158 0.99324 0.93191 0.97082 1.21221 0.95074 0.97850 1.05797 1.17735 0.91802 0.91819 0.87231 1.19613 1.05234 1.01727 1.23133 0.92543 1.26693 0.93132 1.04647 0.93312 1.69741 1.16698 1.39249 1.18450 0.85273 0.79626 0.76599 0.78910 1.19219 1.19178 1.17359 1.22636 1.00934 0.98733 0.82845 1.23033 0.80495 1.00027 0.99145 1.87901 1.21550 1.77417 1.43295 0.89894 0.90602 0.90636 0.89565 0.90421 0.85803 0.84889 0.86068 0.88121 0.89753 0.88368 0.89035 0.84292 0.94049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.57 71.98 0.69 -1.90 16 2 C 0.08 2.04 3.40 30.69 0.10 2.15 16 3 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 4 C 0.08 2.60 5.94 86.35 0.51 3.12 16 5 N -0.62 -23.25 3.03 -821.98 -2.49 -25.74 16 6 C 0.58 27.89 6.67 86.67 0.58 28.47 16 7 O -0.58 -33.11 15.02 -4.06 -0.06 -33.17 16 8 C -0.27 -13.45 4.99 -19.70 -0.10 -13.55 16 9 C -0.05 -2.22 7.52 22.50 0.17 -2.05 16 10 C -0.23 -9.00 10.03 22.40 0.22 -8.78 16 11 C -0.09 -3.80 10.01 22.26 0.22 -3.58 16 12 C -0.18 -9.19 8.65 22.72 0.20 -8.99 16 13 C 0.12 6.46 5.53 -21.11 -0.12 6.34 16 14 C -0.47 -26.96 7.77 23.42 0.18 -26.78 16 15 H 0.06 3.40 6.99 -2.91 -0.02 3.38 16 16 C 0.04 2.03 5.16 85.37 0.44 2.47 16 17 N -0.82 -43.84 11.19 21.88 0.24 -43.59 16 18 Si 0.98 41.07 29.59 68.60 2.03 43.10 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 22 C 0.07 2.05 5.18 86.22 0.45 2.50 16 23 C 0.05 1.25 6.97 71.94 0.50 1.75 16 24 O -0.38 -10.16 10.39 -148.98 -1.55 -11.71 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 29 H 0.08 2.78 7.06 -2.38 -0.02 2.76 16 30 H 0.12 4.21 7.04 -2.91 -0.02 4.19 16 31 H 0.13 4.09 8.06 -2.91 -0.02 4.06 16 32 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 33 H 0.10 5.36 6.50 -2.91 -0.02 5.34 16 34 H 0.29 14.02 8.29 -92.70 -0.77 13.25 16 35 H 0.10 3.10 5.25 -2.39 -0.01 3.09 16 36 H 0.09 2.22 8.13 -2.39 -0.02 2.20 16 37 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -69.16 310.28 3.29 -65.87 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 1.06 Total: 24.06 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 4.05 Total: -18.82 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: -2.24 Total: -69.33 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -1.61 Total: -44.88 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -69.16 3.29 -65.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600982179.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.941 kcal (2) G-P(sol) polarization free energy of solvation -69.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds