Wall clock time and date at job start Mon Mar 30 2020 02:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.89157 * 2 1 4 4 C 1.54909 * 111.00535 * 236.11242 * 2 1 3 5 5 N 1.47421 * 104.83243 * 204.88025 * 4 2 1 6 6 C 1.34781 * 125.64428 * 204.09281 * 5 4 2 7 7 O 1.21604 * 120.00317 * 5.08760 * 6 5 4 8 8 C 1.47436 * 119.99664 * 185.08985 * 6 5 4 9 9 C 1.39228 * 120.28221 * 311.59440 * 8 6 5 10 10 C 1.38216 * 120.09298 * 179.97438 * 9 8 6 11 11 C 1.38828 * 120.67650 * 359.97438 * 10 9 8 12 12 C 1.37598 * 120.56765 * 0.02775 * 11 10 9 13 13 C 1.40701 * 119.88345 * 359.97438 * 12 11 10 14 14 C 1.40892 * 120.32542 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99918 * 145.82145 * 14 13 12 16 16 C 1.40268 * 120.00149 * 325.81829 * 14 13 12 17 17 N 1.30624 * 119.99957 * 168.36768 * 16 14 13 18 18 Si 1.86803 * 119.99951 * 348.36484 * 16 14 13 19 19 H 1.48498 * 109.46990 * 92.85033 * 18 16 14 20 20 H 1.48498 * 109.47080 * 212.84781 * 18 16 14 21 21 H 1.48500 * 109.46957 * 332.84446 * 18 16 14 22 22 C 1.47019 * 108.70460 * 24.36268 * 5 4 2 23 23 C 1.54331 * 107.26581 * 358.58101 * 22 5 4 24 24 H 1.08996 * 110.66695 * 96.52276 * 23 22 5 25 25 O 1.42898 * 110.85152 * 219.67774 * 23 22 5 26 26 H 1.08993 * 109.47300 * 182.42936 * 1 2 3 27 27 H 1.09002 * 109.46744 * 302.43055 * 1 2 3 28 28 H 1.09003 * 109.46902 * 62.42507 * 1 2 3 29 29 H 1.09003 * 110.36182 * 86.04383 * 4 2 1 30 30 H 1.08994 * 110.36801 * 323.72412 * 4 2 1 31 31 H 1.08001 * 119.95001 * 359.97438 * 9 8 6 32 32 H 1.07999 * 119.66364 * 180.27877 * 10 9 8 33 33 H 1.08000 * 119.71514 * 180.02562 * 11 10 9 34 34 H 1.08006 * 120.05354 * 179.97438 * 12 11 10 35 35 H 0.97004 * 120.00192 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.88328 * 118.13004 * 22 5 4 37 37 H 1.09000 * 109.87835 * 239.29278 * 22 5 4 38 38 H 0.96706 * 113.99946 * 293.69391 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8063 -1.2005 5 7 3.4275 -1.2421 -0.7740 6 6 4.4479 -1.5601 -1.5951 7 8 4.3311 -1.4105 -2.7962 8 6 5.7057 -2.0893 -1.0370 9 6 6.3198 -1.4520 0.0379 10 6 7.4986 -1.9518 0.5584 11 6 8.0839 -3.0901 0.0207 12 6 7.5006 -3.7416 -1.0417 13 6 6.3004 -3.2534 -1.5902 14 6 5.6955 -3.9128 -2.6783 15 1 4.6190 -3.9418 -2.7615 16 6 6.4911 -4.5317 -3.6537 17 7 5.9453 -5.3305 -4.5314 18 14 8.3313 -4.2134 -3.6977 19 1 9.0330 -5.2559 -2.9065 20 1 8.8074 -4.2550 -5.1037 21 1 8.6164 -2.8763 -3.1179 22 6 3.4665 -1.2786 0.6953 23 6 2.0869 -0.8078 1.2020 24 1 1.4463 -1.6616 1.4228 25 8 2.2259 0.0286 2.3523 26 1 -0.3633 -1.0267 0.0436 27 1 -0.3633 0.5511 0.8674 28 1 -0.3633 0.4757 -0.9110 29 1 2.1554 -0.1715 -2.0838 30 1 1.4522 -1.6703 -1.4025 31 1 5.8743 -0.5660 0.4655 32 1 7.9667 -1.4546 1.3951 33 1 9.0050 -3.4674 0.4398 34 1 7.9634 -4.6262 -1.4538 35 1 6.4955 -5.7582 -5.2062 36 1 3.6615 -2.2955 1.0357 37 1 4.2430 -0.6073 1.0622 38 1 2.5707 -0.4285 3.1317 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601398516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:32 Heat of formation + Delta-G solvation = -62.809418 kcal Electronic energy + Delta-G solvation = -21492.711042 eV Core-core repulsion = 18299.680558 eV Total energy + Delta-G solvation = -3193.030484 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.84667 -38.15463 -36.86784 -35.29586 -33.71240 -32.61296 -30.57713 -30.06155 -28.45562 -26.47162 -25.20069 -23.21311 -21.76830 -21.18686 -20.29495 -18.87009 -17.60003 -17.39128 -16.61232 -15.92009 -15.49932 -14.73939 -14.61019 -14.22685 -13.98673 -13.71837 -13.42078 -13.17477 -12.93719 -12.61602 -12.39557 -12.24567 -12.03428 -11.96449 -11.62046 -11.47964 -11.11702 -10.92532 -10.90161 -10.46468 -10.41533 -10.20522 -9.96738 -9.80233 -9.28049 -8.83371 -8.13083 -7.81818 -7.68284 -6.98228 -4.55290 2.18780 2.56823 3.07561 3.17915 3.30275 3.44490 3.76861 3.95725 4.12215 4.44491 4.47983 4.57781 4.95307 5.16008 5.29577 5.36734 5.45101 5.55599 5.67192 5.75770 5.78619 5.90042 5.95909 6.01702 6.02555 6.08515 6.25196 6.28731 6.51127 6.75771 6.79198 7.06436 7.20824 7.40100 7.49232 7.54771 7.70635 7.96143 8.13942 8.30863 8.53289 8.69744 9.10263 10.03185 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.023621 B = 0.005865 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.108388 B = 4772.959469 C = 5645.265379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.091 0.909 4 C 0.111 3.889 5 N -0.626 5.626 6 C 0.596 3.404 7 O -0.527 6.527 8 C -0.237 4.237 9 C -0.048 4.048 10 C -0.251 4.251 11 C -0.064 4.064 12 C -0.231 4.231 13 C 0.122 3.878 14 C -0.413 4.413 15 H 0.092 0.908 16 C 0.084 3.916 17 N -0.798 5.798 18 Si 0.914 3.086 19 H -0.269 1.269 20 H -0.288 1.288 21 H -0.241 1.241 22 C 0.076 3.924 23 C 0.094 3.906 24 H 0.073 0.927 25 O -0.558 6.558 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.288 0.712 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.503 5.902 10.823 13.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 H 0.109 0.891 4 C -0.011 4.011 5 N -0.363 5.363 6 C 0.389 3.611 7 O -0.402 6.402 8 C -0.241 4.241 9 C -0.067 4.067 10 C -0.271 4.271 11 C -0.083 4.083 12 C -0.250 4.250 13 C 0.118 3.882 14 C -0.441 4.441 15 H 0.110 0.890 16 C -0.136 4.136 17 N -0.421 5.421 18 Si 0.740 3.260 19 H -0.195 1.195 20 H -0.216 1.216 21 H -0.164 1.164 22 C -0.049 4.049 23 C 0.034 3.966 24 H 0.091 0.909 25 O -0.363 6.363 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -5.769 6.222 9.426 12.682 hybrid contribution 1.028 -0.520 0.317 1.195 sum -4.741 5.703 9.743 12.244 Atomic orbital electron populations 1.21684 0.93542 1.02175 1.02231 1.22377 0.96249 1.00163 0.92881 0.89076 1.22179 0.83928 0.97958 0.97085 1.48387 1.12130 1.69930 1.05899 1.18130 0.82312 0.75515 0.85165 1.90734 1.81983 1.52778 1.14726 1.19376 0.99389 1.00907 1.04471 1.20811 0.95144 0.97157 0.93545 1.20279 0.99927 1.01505 1.05354 1.20727 0.97366 0.94727 0.95474 1.21068 1.00533 1.02526 1.00859 1.17455 0.90270 0.88736 0.91740 1.19498 0.96655 1.24400 1.03526 0.88994 1.26222 1.01860 0.91217 0.94346 1.69555 1.39550 1.19826 1.13210 0.86285 0.81102 0.81803 0.76837 1.19499 1.21578 1.16445 1.22741 0.97958 1.01966 0.82202 1.22956 0.94810 0.92778 0.86031 0.90921 1.86522 1.88109 1.39863 1.21778 0.92368 0.91974 0.92050 0.90186 0.91662 0.88303 0.88463 0.88508 0.87701 0.90176 0.91147 0.90540 0.77319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.30 37.16 0.35 -0.99 16 2 C -0.10 -1.19 3.37 -88.47 -0.30 -1.49 16 3 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.11 1.72 6.40 -2.53 -0.02 1.71 16 5 N -0.63 -11.61 3.33 -171.78 -0.57 -12.18 16 6 C 0.60 14.06 6.72 -12.51 -0.08 13.97 16 7 O -0.53 -14.39 16.11 5.27 0.08 -14.31 16 8 C -0.24 -5.64 5.44 -104.37 -0.57 -6.21 16 9 C -0.05 -0.98 8.50 -39.22 -0.33 -1.32 16 10 C -0.25 -4.95 10.03 -39.37 -0.39 -5.34 16 11 C -0.06 -1.34 10.01 -39.60 -0.40 -1.73 16 12 C -0.23 -5.45 7.01 -38.89 -0.27 -5.72 16 13 C 0.12 3.16 5.08 -106.54 -0.54 2.62 16 14 C -0.41 -11.61 8.27 -37.82 -0.31 -11.92 16 15 H 0.09 2.81 7.46 -52.48 -0.39 2.42 16 16 C 0.08 2.26 5.47 -17.30 -0.09 2.17 16 17 N -0.80 -21.77 13.92 55.56 0.77 -21.00 16 18 Si 0.91 21.21 24.47 -169.99 -4.16 17.05 16 19 H -0.27 -5.86 6.72 56.52 0.38 -5.48 16 20 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 21 H -0.24 -5.81 6.72 56.52 0.38 -5.43 16 22 C 0.08 1.10 5.53 -3.06 -0.02 1.09 16 23 C 0.09 1.09 3.79 -24.89 -0.09 1.00 16 24 H 0.07 0.75 8.01 -51.93 -0.42 0.34 16 25 O -0.56 -5.96 13.39 -35.23 -0.47 -6.43 16 26 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 1.30 7.99 -51.93 -0.41 0.89 16 30 H 0.07 0.97 8.04 -51.93 -0.42 0.56 16 31 H 0.10 1.77 6.01 -52.49 -0.32 1.45 16 32 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 34 H 0.11 2.44 4.79 -52.48 -0.25 2.19 16 35 H 0.29 7.05 8.29 -40.82 -0.34 6.71 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.11 5.82 -51.93 -0.30 0.81 16 38 H 0.38 2.45 9.12 45.56 0.42 2.86 16 LS Contribution 309.01 15.07 4.66 4.66 Total: -1.00 -31.92 309.01 -6.99 -38.91 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -4.23 Total: 5.48 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -3.08 Total: -12.18 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.20 Total: -33.18 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.39 Total: -20.74 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.16 Total: 17.05 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.92 -6.99 -38.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601398516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.897 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds