Wall clock time and date at job start Mon Mar 30 2020 02:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.89157 * 2 1 4 4 C 1.54909 * 111.00535 * 236.11242 * 2 1 3 5 5 N 1.47421 * 104.83243 * 204.88025 * 4 2 1 6 6 C 1.34781 * 125.64428 * 204.09281 * 5 4 2 7 7 O 1.21604 * 120.00317 * 5.08760 * 6 5 4 8 8 C 1.47436 * 119.99664 * 185.08985 * 6 5 4 9 9 C 1.39228 * 120.28221 * 311.59440 * 8 6 5 10 10 C 1.38216 * 120.09298 * 179.97438 * 9 8 6 11 11 C 1.38828 * 120.67650 * 359.97438 * 10 9 8 12 12 C 1.37598 * 120.56765 * 0.02775 * 11 10 9 13 13 C 1.40701 * 119.88345 * 359.97438 * 12 11 10 14 14 C 1.40892 * 120.32542 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99918 * 145.82145 * 14 13 12 16 16 C 1.40268 * 120.00149 * 325.81829 * 14 13 12 17 17 N 1.30624 * 119.99957 * 168.36768 * 16 14 13 18 18 Si 1.86803 * 119.99951 * 348.36484 * 16 14 13 19 19 H 1.48498 * 109.46990 * 92.85033 * 18 16 14 20 20 H 1.48498 * 109.47080 * 212.84781 * 18 16 14 21 21 H 1.48500 * 109.46957 * 332.84446 * 18 16 14 22 22 C 1.47019 * 108.70460 * 24.36268 * 5 4 2 23 23 C 1.54331 * 107.26581 * 358.58101 * 22 5 4 24 24 H 1.08996 * 110.66695 * 96.52276 * 23 22 5 25 25 O 1.42898 * 110.85152 * 219.67774 * 23 22 5 26 26 H 1.08993 * 109.47300 * 182.42936 * 1 2 3 27 27 H 1.09002 * 109.46744 * 302.43055 * 1 2 3 28 28 H 1.09003 * 109.46902 * 62.42507 * 1 2 3 29 29 H 1.09003 * 110.36182 * 86.04383 * 4 2 1 30 30 H 1.08994 * 110.36801 * 323.72412 * 4 2 1 31 31 H 1.08001 * 119.95001 * 359.97438 * 9 8 6 32 32 H 1.07999 * 119.66364 * 180.27877 * 10 9 8 33 33 H 1.08000 * 119.71514 * 180.02562 * 11 10 9 34 34 H 1.08006 * 120.05354 * 179.97438 * 12 11 10 35 35 H 0.97004 * 120.00192 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.88328 * 118.13004 * 22 5 4 37 37 H 1.09000 * 109.87835 * 239.29278 * 22 5 4 38 38 H 0.96706 * 113.99946 * 293.69391 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8063 -1.2005 5 7 3.4275 -1.2421 -0.7740 6 6 4.4479 -1.5601 -1.5951 7 8 4.3311 -1.4105 -2.7962 8 6 5.7057 -2.0893 -1.0370 9 6 6.3198 -1.4520 0.0379 10 6 7.4986 -1.9518 0.5584 11 6 8.0839 -3.0901 0.0207 12 6 7.5006 -3.7416 -1.0417 13 6 6.3004 -3.2534 -1.5902 14 6 5.6955 -3.9128 -2.6783 15 1 4.6190 -3.9418 -2.7615 16 6 6.4911 -4.5317 -3.6537 17 7 5.9453 -5.3305 -4.5314 18 14 8.3313 -4.2134 -3.6977 19 1 9.0330 -5.2559 -2.9065 20 1 8.8074 -4.2550 -5.1037 21 1 8.6164 -2.8763 -3.1179 22 6 3.4665 -1.2786 0.6953 23 6 2.0869 -0.8078 1.2020 24 1 1.4463 -1.6616 1.4228 25 8 2.2259 0.0286 2.3523 26 1 -0.3633 -1.0267 0.0436 27 1 -0.3633 0.5511 0.8674 28 1 -0.3633 0.4757 -0.9110 29 1 2.1554 -0.1715 -2.0838 30 1 1.4522 -1.6703 -1.4025 31 1 5.8743 -0.5660 0.4655 32 1 7.9667 -1.4546 1.3951 33 1 9.0050 -3.4674 0.4398 34 1 7.9634 -4.6262 -1.4538 35 1 6.4955 -5.7582 -5.2062 36 1 3.6615 -2.2955 1.0357 37 1 4.2430 -0.6073 1.0622 38 1 2.5707 -0.4285 3.1317 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601398516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:32 Heat of formation + Delta-G solvation = -86.980305 kcal Electronic energy + Delta-G solvation = -21493.759170 eV Core-core repulsion = 18299.680558 eV Total energy + Delta-G solvation = -3194.078612 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.33022 -39.63424 -38.53989 -36.45647 -35.60069 -33.88771 -32.42673 -31.70279 -29.64646 -27.85905 -26.89682 -24.60392 -23.33525 -22.85059 -21.38820 -20.50389 -19.38171 -18.55631 -18.11467 -17.42751 -17.13314 -16.37333 -16.08113 -15.87953 -15.27292 -15.21413 -14.89456 -14.42329 -14.37272 -14.04880 -13.96443 -13.77342 -13.59372 -13.35856 -12.98163 -12.80331 -12.62901 -12.53586 -12.15185 -12.09534 -11.94037 -11.65518 -11.43280 -11.16196 -11.09887 -10.61293 -9.73175 -9.53420 -9.47330 -8.93085 -6.56977 0.41492 0.78520 1.20726 1.35175 1.44853 1.86604 2.06303 2.13632 2.60436 3.20858 3.36008 3.42173 3.50810 3.96510 4.06546 4.08145 4.26930 4.36211 4.38384 4.48845 4.60198 4.65904 4.70253 4.76941 4.84374 4.86551 4.96124 4.99462 5.20173 5.23648 5.29345 5.37228 5.47734 5.67485 5.77428 5.88876 6.13418 6.30612 6.50029 6.67191 6.70805 6.86900 7.33555 8.16100 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.023621 B = 0.005865 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.108388 B = 4772.959469 C = 5645.265379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 H 0.086 0.914 4 C 0.103 3.897 5 N -0.624 5.624 6 C 0.584 3.416 7 O -0.584 6.584 8 C -0.252 4.252 9 C -0.048 4.048 10 C -0.222 4.222 11 C -0.062 4.062 12 C -0.245 4.245 13 C 0.102 3.898 14 C -0.457 4.457 15 H 0.038 0.962 16 C 0.040 3.960 17 N -0.850 5.850 18 Si 0.971 3.029 19 H -0.241 1.241 20 H -0.280 1.280 21 H -0.254 1.254 22 C 0.069 3.931 23 C 0.110 3.890 24 H 0.093 0.907 25 O -0.561 6.561 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.130 0.870 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.105 0.895 35 H 0.295 0.705 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.065 7.473 14.868 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.107 4.107 3 H 0.105 0.895 4 C -0.019 4.019 5 N -0.359 5.359 6 C 0.377 3.623 7 O -0.464 6.464 8 C -0.256 4.256 9 C -0.066 4.066 10 C -0.241 4.241 11 C -0.080 4.080 12 C -0.264 4.264 13 C 0.098 3.902 14 C -0.486 4.486 15 H 0.057 0.943 16 C -0.174 4.174 17 N -0.477 5.477 18 Si 0.793 3.207 19 H -0.165 1.165 20 H -0.207 1.207 21 H -0.178 1.178 22 C -0.054 4.054 23 C 0.050 3.950 24 H 0.111 0.889 25 O -0.369 6.369 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.147 0.853 32 H 0.163 0.837 33 H 0.158 0.842 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -4.358 7.791 13.559 16.234 hybrid contribution 0.535 -0.803 -0.629 1.152 sum -3.824 6.987 12.930 15.187 Atomic orbital electron populations 1.21667 0.91254 1.03014 1.03149 1.22312 0.97937 0.99129 0.91279 0.89538 1.22406 0.82679 0.98365 0.98479 1.48353 1.12024 1.67907 1.07626 1.18329 0.83604 0.75452 0.84909 1.90687 1.83207 1.55370 1.17157 1.19699 0.99848 1.00723 1.05361 1.21161 0.95410 0.97690 0.92355 1.20921 0.98265 1.00023 1.04878 1.21239 0.98499 0.94422 0.93836 1.21205 0.99968 1.03150 1.02059 1.17682 0.91673 0.89424 0.91375 1.19300 0.94339 1.28435 1.06539 0.94339 1.26988 1.05944 0.90827 0.93631 1.69602 1.41167 1.22073 1.14835 0.85442 0.76315 0.81404 0.77543 1.16507 1.20666 1.17809 1.23037 1.00588 1.02318 0.79450 1.22783 0.92810 0.93178 0.86225 0.88939 1.86492 1.88176 1.40122 1.22126 0.91629 0.90602 0.91567 0.91879 0.91470 0.85256 0.83651 0.84195 0.87711 0.89482 0.91262 0.89746 0.74905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.30 71.98 0.67 -1.58 16 2 C -0.09 -1.97 3.37 -9.40 -0.03 -2.00 16 3 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 4 C 0.10 3.25 6.40 86.86 0.56 3.81 16 5 N -0.62 -23.50 3.33 -815.65 -2.71 -26.21 16 6 C 0.58 28.81 6.72 86.67 0.58 29.39 16 7 O -0.58 -34.41 16.11 -4.04 -0.07 -34.47 16 8 C -0.25 -12.08 5.44 -19.70 -0.11 -12.19 16 9 C -0.05 -1.80 8.50 22.50 0.19 -1.61 16 10 C -0.22 -7.49 10.03 22.41 0.22 -7.26 16 11 C -0.06 -2.28 10.01 22.26 0.22 -2.05 16 12 C -0.24 -11.21 7.01 22.72 0.16 -11.05 16 13 C 0.10 5.41 5.08 -21.11 -0.11 5.30 16 14 C -0.46 -27.68 8.27 23.41 0.19 -27.49 16 15 H 0.04 2.63 7.46 -2.91 -0.02 2.61 16 16 C 0.04 2.30 5.47 85.37 0.47 2.76 16 17 N -0.85 -49.82 13.92 21.88 0.30 -49.52 16 18 Si 0.97 44.66 24.47 68.60 1.68 46.34 16 19 H -0.24 -9.83 6.72 99.48 0.67 -9.16 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.25 -12.02 6.72 99.48 0.67 -11.36 16 22 C 0.07 1.88 5.53 86.73 0.48 2.36 16 23 C 0.11 2.23 3.79 31.79 0.12 2.35 16 24 H 0.09 1.59 8.01 -2.39 -0.02 1.57 16 25 O -0.56 -9.68 13.39 -148.98 -2.00 -11.68 16 26 H 0.06 1.03 8.11 -2.39 -0.02 1.01 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 2.18 7.99 -2.39 -0.02 2.16 16 30 H 0.07 2.08 8.04 -2.39 -0.02 2.06 16 31 H 0.13 4.07 6.01 -2.91 -0.02 4.06 16 32 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 33 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 34 H 0.11 4.74 4.79 -2.91 -0.01 4.73 16 35 H 0.29 15.40 8.29 -92.71 -0.77 14.63 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.08 2.16 5.82 -2.39 -0.01 2.15 16 38 H 0.40 3.34 9.12 -74.05 -0.68 2.67 16 Total: -1.00 -76.68 309.01 1.16 -75.52 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.33 Total: 19.29 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 3.62 Total: -19.27 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -2.41 Total: -75.73 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -2.06 Total: -46.15 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.68 Total: 46.34 kcal Total: -76.68 1.16 -75.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601398516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.462 kcal (2) G-P(sol) polarization free energy of solvation -76.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds