Wall clock time and date at job start Mon Mar 30 2020 02:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46997 * 2 1 4 4 C 1.53004 * 109.46961 * 240.00638 * 2 1 3 5 5 C 1.50703 * 109.47145 * 65.00279 * 4 2 1 6 6 H 1.08000 * 120.00158 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99878 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00103 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99853 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47432 * 59.99282 * 9 7 5 11 11 H 1.48501 * 109.47041 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47041 * 299.98898 * 9 7 5 13 13 C 1.52994 * 109.47197 * 120.00627 * 2 1 3 14 14 N 1.46899 * 109.47263 * 285.43467 * 13 2 1 15 15 C 1.46470 * 110.99482 * 77.88679 * 14 13 2 16 16 C 1.53190 * 109.90106 * 162.99996 * 15 14 13 17 17 S 1.81817 * 108.67325 * 62.63683 * 16 15 14 18 18 O 1.42097 * 108.70435 * 61.93854 * 17 16 15 19 19 O 1.42103 * 108.69960 * 193.28905 * 17 16 15 20 20 C 1.81818 * 101.02175 * 307.68414 * 17 16 15 21 21 C 1.46468 * 111.00183 * 312.03756 * 14 13 2 22 22 H 1.08999 * 109.40581 * 76.86137 * 21 14 13 23 23 C 1.53005 * 109.39724 * 317.12549 * 21 14 13 24 24 H 1.08999 * 109.47464 * 317.57963 * 1 2 3 25 25 H 1.09005 * 109.47205 * 77.57981 * 1 2 3 26 26 H 1.09003 * 109.47493 * 197.57613 * 1 2 3 27 27 H 1.09003 * 109.47115 * 184.99663 * 4 2 1 28 28 H 1.08996 * 109.47325 * 304.99847 * 4 2 1 29 29 H 0.96998 * 119.99889 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.46832 * 165.43937 * 13 2 1 31 31 H 1.09000 * 109.47715 * 45.44110 * 13 2 1 32 32 H 1.08998 * 109.40601 * 283.13354 * 15 14 13 33 33 H 1.09000 * 109.40290 * 42.87555 * 15 14 13 34 34 H 1.08993 * 109.60428 * 182.38865 * 16 15 14 35 35 H 1.09004 * 109.60095 * 302.72245 * 16 15 14 36 36 H 1.09003 * 109.60009 * 172.07535 * 20 17 16 37 37 H 1.09003 * 109.60310 * 292.39953 * 20 17 16 38 38 H 1.09000 * 109.47126 * 60.00075 * 23 21 14 39 39 H 1.09003 * 109.47125 * 180.02562 * 23 21 14 40 40 H 1.09004 * 109.46750 * 300.00074 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6413 0.0574 -2.4766 6 1 1.0800 0.9745 -2.3757 7 6 1.9923 -0.4018 -3.7284 8 7 2.6754 -1.5189 -3.8514 9 14 1.4975 0.5628 -5.2496 10 1 2.0895 1.9232 -5.1874 11 1 1.9926 -0.1371 -6.4622 12 1 0.0175 0.6691 -5.3087 13 6 2.0399 -0.7214 1.2491 14 7 1.8557 0.1424 2.4230 15 6 0.4606 0.1311 2.8690 16 6 0.3659 0.6726 4.2988 17 16 0.9273 2.4019 4.3048 18 8 0.0639 3.1642 3.4726 19 8 1.1354 2.8087 5.6504 20 6 2.5415 2.2461 3.4827 21 6 2.3484 1.4966 2.1608 22 1 1.6267 2.0314 1.5434 23 6 3.6859 1.4165 1.4219 24 1 -0.3634 0.7586 0.6932 25 1 -0.3634 0.2210 -1.0037 26 1 -0.3634 -0.9797 0.3103 27 1 3.1263 -0.7993 -1.2058 28 1 1.6053 -1.7196 -1.2954 29 1 2.9226 -1.8417 -4.7320 30 1 3.0989 -0.9506 1.1294 31 1 1.4813 -1.6470 1.3878 32 1 -0.1370 0.7558 2.2050 33 1 0.0803 -0.8900 2.8428 34 1 -0.6677 0.6226 4.6411 35 1 0.9986 0.0779 4.9577 36 1 2.9483 3.2379 3.2847 37 1 3.2264 1.6912 4.1239 38 1 3.5482 0.8900 0.4775 39 1 4.0539 2.4237 1.2266 40 1 4.4084 0.8786 2.0358 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602473121.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:25 Heat of formation + Delta-G solvation = -65.612227 kcal Electronic energy + Delta-G solvation = -20808.212099 eV Core-core repulsion = 17750.504027 eV Total energy + Delta-G solvation = -3057.708071 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.64994 -37.05810 -36.11535 -34.79755 -33.15219 -32.33674 -30.13030 -27.69812 -26.95650 -25.61746 -23.14030 -22.86920 -20.53965 -19.24141 -18.62327 -16.83744 -16.54938 -16.35032 -16.09270 -15.77829 -15.59789 -14.49663 -14.13368 -14.11242 -13.36875 -13.06450 -12.78942 -12.71093 -12.33263 -12.18785 -12.15539 -12.10441 -11.92055 -11.69205 -11.60114 -11.31839 -11.25195 -10.89039 -10.77191 -10.66590 -10.52128 -10.32108 -10.14349 -9.75683 -9.44057 -9.14611 -8.39419 -8.08878 -6.04265 -4.06223 -0.06336 2.54318 3.30038 3.35056 3.37472 3.53474 3.61361 4.01586 4.38549 4.42149 4.56316 4.69606 4.95440 4.97791 5.04730 5.31548 5.45488 5.48384 5.56552 5.59142 5.64763 5.72621 5.84670 5.94828 6.11444 6.17428 6.32007 6.37779 6.44743 6.71822 6.89244 6.99960 7.13393 7.17040 7.59983 7.73132 7.94356 8.37440 8.99759 9.58005 11.06668 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.032691 B = 0.004524 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.298896 B = 6187.614860 C = 6264.378713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 H 0.072 0.928 4 C 0.032 3.968 5 C -0.518 4.518 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.061 3.939 14 N -0.549 5.549 15 C 0.052 3.948 16 C -0.594 4.594 17 S 2.406 3.594 18 O -0.940 6.940 19 O -0.951 6.951 20 C -0.588 4.588 21 C 0.092 3.908 22 H 0.070 0.930 23 C -0.156 4.156 24 H 0.038 0.962 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.261 0.739 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.145 3.452 15.479 15.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 H 0.090 0.910 4 C -0.006 4.006 5 C -0.556 4.556 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.273 5.273 15 C -0.077 4.077 16 C -0.725 4.725 17 S 2.590 3.410 18 O -0.937 6.937 19 O -0.948 6.948 20 C -0.719 4.719 21 C -0.017 4.017 22 H 0.088 0.912 23 C -0.214 4.214 24 H 0.057 0.943 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.158 0.842 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.230 3.918 16.088 16.604 hybrid contribution -0.305 0.057 -1.729 1.756 sum -1.535 3.975 14.360 14.979 Atomic orbital electron populations 1.22120 0.96411 0.99535 1.02437 1.22090 0.95614 1.00813 0.96670 0.90959 1.19063 0.95989 0.95452 0.90048 1.21183 1.34995 1.08364 0.91041 0.92699 1.24994 0.95221 0.95016 0.99059 1.69942 1.38803 1.21112 1.23588 0.86716 0.78930 0.80158 0.82549 1.20281 1.21339 1.20293 1.22478 1.02338 0.94896 0.86806 1.61609 1.18497 1.10323 1.36920 1.22136 0.90534 1.04147 0.90857 1.30212 1.12339 1.23755 1.06149 1.08248 0.78701 0.78444 0.75606 1.93600 1.63601 1.67155 1.69320 1.93576 1.85974 1.80695 1.34545 1.30276 1.22286 1.09494 1.09812 1.21245 0.99643 0.88907 0.91939 0.91231 1.22160 0.94716 1.02722 1.01806 0.94312 0.91046 0.93838 0.96585 0.96559 0.92970 0.89975 0.90864 0.91053 0.88461 0.84900 0.84319 0.84710 0.84209 0.89101 0.92103 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.15 37.15 0.30 -2.25 16 2 C -0.13 -2.38 1.17 -90.62 -0.11 -2.49 16 3 H 0.07 1.31 4.58 -51.93 -0.24 1.08 16 4 C 0.03 0.75 4.39 -27.88 -0.12 0.63 16 5 C -0.52 -13.74 8.15 -34.44 -0.28 -14.02 16 6 H 0.05 1.43 7.21 -52.49 -0.38 1.05 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -25.94 13.29 55.43 0.74 -25.21 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.06 0.90 4.43 -3.83 -0.02 0.88 16 14 N -0.55 -6.75 4.52 -227.12 -1.03 -7.77 16 15 C 0.05 0.58 4.39 -3.96 -0.02 0.56 16 16 C -0.59 -5.27 6.58 37.26 0.25 -5.03 16 17 S 2.41 26.24 5.34 -107.50 -0.57 25.66 16 18 O -0.94 -13.65 18.10 -57.81 -1.05 -14.70 16 19 O -0.95 -12.97 18.11 -57.81 -1.05 -14.01 16 20 C -0.59 -5.69 5.86 37.25 0.22 -5.47 16 21 C 0.09 1.13 1.70 -67.85 -0.12 1.01 16 22 H 0.07 0.95 6.80 -51.93 -0.35 0.59 16 23 C -0.16 -1.97 7.94 37.16 0.30 -1.68 16 24 H 0.04 0.59 5.41 -51.93 -0.28 0.31 16 25 H 0.07 1.41 6.64 -51.93 -0.35 1.07 16 26 H 0.04 0.69 7.81 -51.93 -0.41 0.28 16 27 H 0.02 0.40 8.07 -51.93 -0.42 -0.02 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.08 1.23 6.92 -51.93 -0.36 0.87 16 31 H 0.07 1.04 7.35 -51.93 -0.38 0.66 16 32 H 0.07 0.87 4.93 -51.93 -0.26 0.61 16 33 H 0.10 1.00 7.67 -51.93 -0.40 0.60 16 34 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.14 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.13 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.14 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.38 4.87 -51.93 -0.25 1.13 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 312.01 15.07 4.70 4.70 Total: -1.00 -32.94 312.01 -9.13 -42.07 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.16 Total: -0.52 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 0.30 Total: -26.34 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: -0.29 Total: -32.98 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -2.09 Total: -28.71 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 26.24 SS G_CDS: -0.57 Total: 25.66 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.94 -9.13 -42.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602473121.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.540 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds