Wall clock time and date at job start Mon Mar 30 2020 02:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46997 * 2 1 4 4 C 1.53004 * 109.46961 * 240.00638 * 2 1 3 5 5 C 1.50703 * 109.47145 * 65.00279 * 4 2 1 6 6 H 1.08000 * 120.00158 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99878 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00103 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99853 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47432 * 59.99282 * 9 7 5 11 11 H 1.48501 * 109.47041 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47041 * 299.98898 * 9 7 5 13 13 C 1.52994 * 109.47197 * 120.00627 * 2 1 3 14 14 N 1.46899 * 109.47263 * 285.43467 * 13 2 1 15 15 C 1.46470 * 110.99482 * 77.88679 * 14 13 2 16 16 C 1.53190 * 109.90106 * 162.99996 * 15 14 13 17 17 S 1.81817 * 108.67325 * 62.63683 * 16 15 14 18 18 O 1.42097 * 108.70435 * 61.93854 * 17 16 15 19 19 O 1.42103 * 108.69960 * 193.28905 * 17 16 15 20 20 C 1.81818 * 101.02175 * 307.68414 * 17 16 15 21 21 C 1.46468 * 111.00183 * 312.03756 * 14 13 2 22 22 H 1.08999 * 109.40581 * 76.86137 * 21 14 13 23 23 C 1.53005 * 109.39724 * 317.12549 * 21 14 13 24 24 H 1.08999 * 109.47464 * 317.57963 * 1 2 3 25 25 H 1.09005 * 109.47205 * 77.57981 * 1 2 3 26 26 H 1.09003 * 109.47493 * 197.57613 * 1 2 3 27 27 H 1.09003 * 109.47115 * 184.99663 * 4 2 1 28 28 H 1.08996 * 109.47325 * 304.99847 * 4 2 1 29 29 H 0.96998 * 119.99889 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.46832 * 165.43937 * 13 2 1 31 31 H 1.09000 * 109.47715 * 45.44110 * 13 2 1 32 32 H 1.08998 * 109.40601 * 283.13354 * 15 14 13 33 33 H 1.09000 * 109.40290 * 42.87555 * 15 14 13 34 34 H 1.08993 * 109.60428 * 182.38865 * 16 15 14 35 35 H 1.09004 * 109.60095 * 302.72245 * 16 15 14 36 36 H 1.09003 * 109.60009 * 172.07535 * 20 17 16 37 37 H 1.09003 * 109.60310 * 292.39953 * 20 17 16 38 38 H 1.09000 * 109.47126 * 60.00075 * 23 21 14 39 39 H 1.09003 * 109.47125 * 180.02562 * 23 21 14 40 40 H 1.09004 * 109.46750 * 300.00074 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6413 0.0574 -2.4766 6 1 1.0800 0.9745 -2.3757 7 6 1.9923 -0.4018 -3.7284 8 7 2.6754 -1.5189 -3.8514 9 14 1.4975 0.5628 -5.2496 10 1 2.0895 1.9232 -5.1874 11 1 1.9926 -0.1371 -6.4622 12 1 0.0175 0.6691 -5.3087 13 6 2.0399 -0.7214 1.2491 14 7 1.8557 0.1424 2.4230 15 6 0.4606 0.1311 2.8690 16 6 0.3659 0.6726 4.2988 17 16 0.9273 2.4019 4.3048 18 8 0.0639 3.1642 3.4726 19 8 1.1354 2.8087 5.6504 20 6 2.5415 2.2461 3.4827 21 6 2.3484 1.4966 2.1608 22 1 1.6267 2.0314 1.5434 23 6 3.6859 1.4165 1.4219 24 1 -0.3634 0.7586 0.6932 25 1 -0.3634 0.2210 -1.0037 26 1 -0.3634 -0.9797 0.3103 27 1 3.1263 -0.7993 -1.2058 28 1 1.6053 -1.7196 -1.2954 29 1 2.9226 -1.8417 -4.7320 30 1 3.0989 -0.9506 1.1294 31 1 1.4813 -1.6470 1.3878 32 1 -0.1370 0.7558 2.2050 33 1 0.0803 -0.8900 2.8428 34 1 -0.6677 0.6226 4.6411 35 1 0.9986 0.0779 4.9577 36 1 2.9483 3.2379 3.2847 37 1 3.2264 1.6912 4.1239 38 1 3.5482 0.8900 0.4775 39 1 4.0539 2.4237 1.2266 40 1 4.4084 0.8786 2.0358 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602473121.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:25 Heat of formation + Delta-G solvation = -90.468537 kcal Electronic energy + Delta-G solvation = -20809.289949 eV Core-core repulsion = 17750.504027 eV Total energy + Delta-G solvation = -3058.785922 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74308 -38.03255 -37.08210 -36.34191 -34.24982 -33.98484 -31.30421 -28.82089 -28.54784 -26.90246 -24.61449 -24.02853 -21.78679 -20.41140 -19.63837 -18.49228 -17.60617 -17.46571 -17.05074 -16.91598 -16.65701 -16.32921 -15.39829 -15.20297 -14.47958 -14.34915 -14.06284 -13.73380 -13.58348 -13.45551 -13.26938 -13.14244 -13.08649 -12.87413 -12.86270 -12.72283 -12.62814 -12.39526 -12.32176 -12.01402 -11.97732 -11.52339 -11.36666 -11.16715 -11.10513 -10.88755 -10.50684 -9.23833 -8.15878 -6.24201 -0.89933 1.40142 1.40843 1.48666 1.73853 2.41911 2.65934 2.71710 3.10757 3.17562 3.53777 3.70092 3.97942 3.99773 4.10137 4.18652 4.31079 4.34026 4.48749 4.51486 4.72528 4.78618 4.83162 4.87983 4.90531 4.94087 5.11229 5.16771 5.26480 5.37512 5.39187 5.52745 5.59592 5.79365 5.92069 5.95364 6.08981 6.32265 6.91940 7.43867 8.94721 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.032691 B = 0.004524 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.298896 B = 6187.614860 C = 6264.378713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 H 0.070 0.930 4 C 0.039 3.961 5 C -0.528 4.528 6 H 0.055 0.945 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.951 3.049 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.271 1.271 13 C 0.071 3.929 14 N -0.537 5.537 15 C 0.042 3.958 16 C -0.575 4.575 17 S 2.411 3.589 18 O -0.982 6.982 19 O -0.980 6.980 20 C -0.578 4.578 21 C 0.086 3.914 22 H 0.054 0.946 23 C -0.155 4.155 24 H 0.062 0.938 25 H 0.040 0.960 26 H 0.056 0.944 27 H -0.007 1.007 28 H -0.009 1.009 29 H 0.261 0.739 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.113 0.887 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.151 0.849 37 H 0.165 0.835 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 3.701 16.942 17.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.142 4.142 3 H 0.088 0.912 4 C 0.001 3.999 5 C -0.567 4.567 6 H 0.073 0.927 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.776 3.224 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.196 1.196 13 C -0.056 4.056 14 N -0.261 5.261 15 C -0.087 4.087 16 C -0.708 4.708 17 S 2.600 3.400 18 O -0.979 6.979 19 O -0.977 6.977 20 C -0.709 4.709 21 C -0.024 4.024 22 H 0.071 0.929 23 C -0.213 4.213 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.012 0.988 28 H 0.010 0.990 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.131 0.869 34 H 0.174 0.826 35 H 0.182 0.818 36 H 0.169 0.831 37 H 0.183 0.817 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.543 4.210 17.574 18.137 hybrid contribution -0.194 -0.055 -2.175 2.184 sum -1.737 4.155 15.398 16.043 Atomic orbital electron populations 1.22079 0.95645 1.01130 1.01289 1.21939 0.96136 1.00334 0.95794 0.91228 1.18928 0.94419 0.94462 0.92070 1.21609 1.34276 1.08431 0.92337 0.92687 1.25813 0.95373 0.95968 1.02228 1.70065 1.40223 1.22725 1.24202 0.85718 0.78799 0.78943 0.78903 1.19515 1.21070 1.19602 1.22265 1.02005 0.95244 0.86119 1.61665 1.19455 1.09987 1.34954 1.22275 0.89437 1.05042 0.91911 1.30077 1.14434 1.21064 1.05197 1.07869 0.78594 0.79151 0.74419 1.93547 1.65098 1.69311 1.69985 1.93540 1.86409 1.81940 1.35822 1.30193 1.21877 1.10494 1.08359 1.21281 0.98981 0.88899 0.93192 0.92852 1.22122 0.95440 1.03161 1.00608 0.91971 0.94071 0.92498 0.98844 0.99049 0.93010 0.90477 0.89953 0.92195 0.86877 0.82552 0.81775 0.83113 0.81742 0.92140 0.91073 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 8.15 71.98 0.59 -4.31 16 2 C -0.12 -4.41 1.17 -10.80 -0.01 -4.42 16 3 H 0.07 2.55 4.58 -2.39 -0.01 2.54 16 4 C 0.04 1.89 4.39 29.85 0.13 2.02 16 5 C -0.53 -28.65 8.15 25.60 0.21 -28.44 16 6 H 0.05 2.91 7.21 -2.91 -0.02 2.89 16 7 C 0.00 0.21 5.46 84.65 0.46 0.68 16 8 N -0.93 -55.19 13.29 21.45 0.28 -54.90 16 9 Si 0.95 43.70 29.54 68.60 2.03 45.72 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 C 0.07 2.00 4.43 86.30 0.38 2.38 16 14 N -0.54 -11.90 4.52 -872.46 -3.94 -15.84 16 15 C 0.04 0.80 4.39 86.45 0.38 1.18 16 16 C -0.58 -8.11 6.58 72.05 0.47 -7.64 16 17 S 2.41 47.59 5.34 -56.49 -0.30 47.28 16 18 O -0.98 -27.63 18.10 -127.39 -2.31 -29.93 16 19 O -0.98 -24.90 18.11 -127.39 -2.31 -27.21 16 20 C -0.58 -9.62 5.86 72.04 0.42 -9.20 16 21 C 0.09 1.95 1.70 45.06 0.08 2.03 16 22 H 0.05 1.40 6.80 -2.39 -0.02 1.38 16 23 C -0.16 -3.73 7.94 71.98 0.57 -3.16 16 24 H 0.06 1.81 5.41 -2.39 -0.01 1.80 16 25 H 0.04 1.63 6.64 -2.38 -0.02 1.61 16 26 H 0.06 1.74 7.81 -2.39 -0.02 1.72 16 27 H -0.01 -0.36 8.07 -2.39 -0.02 -0.38 16 28 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 29 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 30 H 0.08 2.27 6.92 -2.39 -0.02 2.25 16 31 H 0.08 2.18 7.35 -2.39 -0.02 2.17 16 32 H 0.06 1.31 4.93 -2.39 -0.01 1.30 16 33 H 0.11 1.88 7.67 -2.39 -0.02 1.87 16 34 H 0.16 1.57 8.14 -2.39 -0.02 1.56 16 35 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.15 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.16 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.06 1.84 4.87 -2.39 -0.01 1.83 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.62 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -72.13 312.01 -1.84 -73.97 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 1.02 Total: 9.79 kcal Atomic # 6 Polarization: -52.57 SS G_CDS: 3.68 Total: -48.88 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -3.66 Total: -70.74 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -4.61 Total: -57.14 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 47.59 SS G_CDS: -0.30 Total: 47.28 kcal Total: -72.13 -1.84 -73.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602473121.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.500 kcal (2) G-P(sol) polarization free energy of solvation -72.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds