Wall clock time and date at job start Mon Mar 30 2020 02:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47235 * 2 1 4 4 C 1.53008 * 109.47202 * 240.00506 * 2 1 3 5 5 C 1.50702 * 109.47065 * 64.99701 * 4 2 1 6 6 H 1.07997 * 119.99681 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99964 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99796 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99839 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47445 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47096 * 119.99991 * 9 7 5 12 12 H 1.48502 * 109.46778 * 239.99513 * 9 7 5 13 13 C 1.52994 * 109.47315 * 120.00544 * 2 1 3 14 14 N 1.46902 * 109.47024 * 294.54363 * 13 2 1 15 15 C 1.46457 * 110.95466 * 137.53596 * 14 13 2 16 16 C 1.53183 * 109.90788 * 196.83592 * 15 14 13 17 17 S 1.81812 * 108.81301 * 297.61647 * 16 15 14 18 18 O 1.42096 * 108.70384 * 166.48807 * 17 16 15 19 19 O 1.42099 * 108.70252 * 297.97755 * 17 16 15 20 20 C 1.81818 * 101.02004 * 52.23364 * 17 16 15 21 21 C 1.46471 * 110.99993 * 263.55338 * 14 13 2 22 22 H 1.09004 * 109.33247 * 283.08786 * 21 14 13 23 23 C 1.53004 * 109.39877 * 42.86591 * 21 14 13 24 24 H 1.09005 * 109.46585 * 175.00019 * 1 2 3 25 25 H 1.08996 * 109.46643 * 294.99731 * 1 2 3 26 26 H 1.08996 * 109.47326 * 55.00022 * 1 2 3 27 27 H 1.09001 * 109.47393 * 185.00087 * 4 2 1 28 28 H 1.09004 * 109.46818 * 304.99890 * 4 2 1 29 29 H 0.97001 * 119.99762 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47064 * 174.54279 * 13 2 1 31 31 H 1.09006 * 109.47434 * 54.54570 * 13 2 1 32 32 H 1.08999 * 109.25773 * 76.78646 * 15 14 13 33 33 H 1.08997 * 109.53385 * 317.05270 * 15 14 13 34 34 H 1.08993 * 109.60442 * 177.77653 * 16 15 14 35 35 H 1.09003 * 109.60357 * 57.45135 * 16 15 14 36 36 H 1.08998 * 109.60509 * 67.44284 * 20 17 16 37 37 H 1.09007 * 109.60607 * 187.76603 * 20 17 16 38 38 H 1.09001 * 109.46954 * 173.07226 * 23 21 14 39 39 H 1.08992 * 109.47551 * 293.07900 * 23 21 14 40 40 H 1.09010 * 109.46686 * 53.08143 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2494 5 6 1.6413 0.0572 -2.4767 6 1 1.0806 0.9747 -2.3756 7 6 1.9923 -0.4020 -3.7284 8 7 2.6755 -1.5190 -3.8513 9 14 1.4987 0.5633 -5.2496 10 1 0.7422 1.7748 -4.8433 11 1 2.7170 0.9672 -5.9965 12 1 0.6440 -0.2853 -6.1184 13 6 2.0400 -0.7213 1.2491 14 7 1.6609 0.0429 2.4450 15 6 1.1826 -0.8469 3.5054 16 6 0.4144 -0.0398 4.5566 17 16 1.5475 1.1622 5.3161 18 8 0.7828 2.1088 6.0497 19 8 2.5934 0.4541 5.9672 20 6 2.2270 1.9794 3.8409 21 6 2.7590 0.9058 2.8865 22 1 3.5073 0.3028 3.4009 23 6 3.3974 1.5786 1.6696 24 1 -0.3633 -1.0238 -0.0896 25 1 -0.3632 0.4343 0.9314 26 1 -0.3634 0.5894 -0.8418 27 1 3.1264 -0.7994 -1.2057 28 1 1.6054 -1.7198 -1.2953 29 1 2.9228 -1.8418 -4.7320 30 1 3.1257 -0.8067 1.2015 31 1 1.5992 -1.7170 1.2993 32 1 2.0354 -1.3358 3.9763 33 1 0.5244 -1.6030 3.0774 34 1 0.0272 -0.7117 5.3224 35 1 -0.4124 0.4873 4.0806 36 1 1.4427 2.5523 3.3462 37 1 3.0381 2.6465 4.1332 38 1 4.1310 2.3125 2.0035 39 1 3.8905 0.8255 1.0551 40 1 2.6254 2.0774 1.0836 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602473122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:28 Heat of formation + Delta-G solvation = -73.029630 kcal Electronic energy + Delta-G solvation = -20473.653906 eV Core-core repulsion = 17415.624191 eV Total energy + Delta-G solvation = -3058.029714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.23464 -37.11952 -36.17565 -35.03069 -33.15629 -32.34991 -30.19090 -27.70790 -26.86247 -25.34143 -23.30342 -22.80024 -20.39325 -19.19675 -18.91774 -16.89623 -16.63828 -16.38257 -15.98583 -15.84092 -15.12413 -14.73276 -14.37029 -13.85403 -13.40191 -13.22845 -12.73444 -12.61011 -12.48129 -12.32471 -12.21379 -12.16512 -11.98318 -11.78299 -11.53370 -11.35405 -11.21386 -10.89128 -10.80293 -10.63702 -10.40529 -10.32731 -10.26261 -9.56499 -9.14032 -9.02947 -8.36777 -8.30925 -6.01529 -4.02531 -0.11729 2.48570 3.29128 3.37285 3.40559 3.46583 3.53659 3.92761 4.31985 4.44767 4.50516 4.65263 4.84710 4.90829 4.98396 5.34427 5.34833 5.45133 5.52170 5.57962 5.60726 5.74375 5.78210 6.03209 6.13375 6.18669 6.40520 6.44249 6.64808 6.84542 7.02017 7.11706 7.17335 7.25263 7.65328 7.80882 7.98837 8.42827 9.04318 9.61426 11.09971 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.039940 B = 0.003992 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.882665 B = 7012.244884 C = 7075.121285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.085 4.085 3 H 0.069 0.931 4 C 0.026 3.974 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.062 3.938 14 N -0.550 5.550 15 C 0.066 3.934 16 C -0.593 4.593 17 S 2.409 3.591 18 O -0.949 6.949 19 O -0.944 6.944 20 C -0.589 4.589 21 C 0.096 3.904 22 H 0.060 0.940 23 C -0.151 4.151 24 H 0.037 0.963 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.012 0.988 28 H 0.014 0.986 29 H 0.259 0.741 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.858 3.588 15.884 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.104 4.104 3 H 0.087 0.913 4 C -0.012 4.012 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.276 5.276 15 C -0.063 4.063 16 C -0.724 4.724 17 S 2.593 3.407 18 O -0.946 6.946 19 O -0.941 6.941 20 C -0.719 4.719 21 C -0.013 4.013 22 H 0.078 0.922 23 C -0.209 4.209 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.031 0.969 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.151 0.849 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.153 0.847 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.982 3.926 16.575 17.149 hybrid contribution 0.125 -0.175 -1.529 1.544 sum -1.857 3.752 15.046 15.617 Atomic orbital electron populations 1.21600 0.96147 1.00496 0.99964 1.21439 0.95729 1.00018 0.93191 0.91286 1.19149 0.95912 0.95511 0.90587 1.21251 1.34510 1.08244 0.90917 0.92547 1.25011 0.95335 0.95065 0.99096 1.69969 1.39153 1.21261 1.23280 0.86599 0.78254 0.80155 0.83362 1.19762 1.21124 1.21128 1.22433 0.99241 0.96031 0.88715 1.61312 1.36422 1.23663 1.06196 1.21813 0.98681 0.94512 0.91322 1.30187 1.15605 1.16249 1.10320 1.08167 0.77186 0.77522 0.77846 1.93584 1.71323 1.60944 1.68713 1.93583 1.55231 1.73322 1.71978 1.30281 1.13215 1.10624 1.17798 1.21283 0.91495 0.92331 0.96224 0.92223 1.22145 1.00985 1.01166 0.96581 0.94368 0.93982 0.92894 0.96929 0.96775 0.93159 0.93040 0.91609 0.92875 0.88220 0.84864 0.83992 0.83881 0.84723 0.92256 0.90793 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 8.87 37.16 0.33 -1.86 16 2 C -0.08 -1.55 2.17 -90.62 -0.20 -1.75 16 3 H 0.07 1.27 5.16 -51.93 -0.27 1.00 16 4 C 0.03 0.62 4.45 -27.88 -0.12 0.50 16 5 C -0.51 -13.67 8.47 -34.44 -0.29 -13.96 16 6 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.22 13.29 55.43 0.74 -25.49 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.13 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.06 0.92 4.04 -3.83 -0.02 0.90 16 14 N -0.55 -6.61 3.58 -227.13 -0.81 -7.42 16 15 C 0.07 0.66 5.31 -3.97 -0.02 0.64 16 16 C -0.59 -4.92 6.57 37.25 0.24 -4.67 16 17 S 2.41 24.11 5.35 -107.50 -0.58 23.53 16 18 O -0.95 -12.46 18.11 -57.80 -1.05 -13.51 16 19 O -0.94 -12.39 18.10 -57.80 -1.05 -13.43 16 20 C -0.59 -5.32 5.85 37.25 0.22 -5.10 16 21 C 0.10 1.06 2.33 -67.85 -0.16 0.91 16 22 H 0.06 0.64 7.94 -51.93 -0.41 0.23 16 23 C -0.15 -1.81 7.71 37.16 0.29 -1.53 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.64 7.64 -51.93 -0.40 0.24 16 26 H 0.05 1.01 7.10 -51.93 -0.37 0.65 16 27 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.05 0.77 6.28 -51.93 -0.33 0.44 16 31 H 0.07 0.95 7.31 -51.93 -0.38 0.57 16 32 H 0.05 0.51 7.93 -51.93 -0.41 0.10 16 33 H 0.10 0.95 7.59 -51.93 -0.39 0.56 16 34 H 0.13 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.14 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.14 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.13 0.98 8.14 -51.92 -0.42 0.56 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.99 6.26 -51.93 -0.32 0.67 16 40 H 0.08 1.05 6.23 -51.92 -0.32 0.73 16 LS Contribution 320.44 15.07 4.83 4.83 Total: -1.00 -33.52 320.44 -9.26 -42.78 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -6.49 Total: -2.93 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: 0.17 Total: -24.49 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: -0.08 Total: -32.91 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -2.09 Total: -26.94 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 24.11 SS G_CDS: -0.58 Total: 23.53 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.52 -9.26 -42.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602473122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.252 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds