Wall clock time and date at job start Mon Mar 30 2020 02:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47235 * 2 1 4 4 C 1.53008 * 109.47202 * 240.00506 * 2 1 3 5 5 C 1.50702 * 109.47065 * 64.99701 * 4 2 1 6 6 H 1.07997 * 119.99681 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99964 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99796 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99839 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47445 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47096 * 119.99991 * 9 7 5 12 12 H 1.48502 * 109.46778 * 239.99513 * 9 7 5 13 13 C 1.52994 * 109.47315 * 120.00544 * 2 1 3 14 14 N 1.46902 * 109.47024 * 294.54363 * 13 2 1 15 15 C 1.46457 * 110.95466 * 137.53596 * 14 13 2 16 16 C 1.53183 * 109.90788 * 196.83592 * 15 14 13 17 17 S 1.81812 * 108.81301 * 297.61647 * 16 15 14 18 18 O 1.42096 * 108.70384 * 166.48807 * 17 16 15 19 19 O 1.42099 * 108.70252 * 297.97755 * 17 16 15 20 20 C 1.81818 * 101.02004 * 52.23364 * 17 16 15 21 21 C 1.46471 * 110.99993 * 263.55338 * 14 13 2 22 22 H 1.09004 * 109.33247 * 283.08786 * 21 14 13 23 23 C 1.53004 * 109.39877 * 42.86591 * 21 14 13 24 24 H 1.09005 * 109.46585 * 175.00019 * 1 2 3 25 25 H 1.08996 * 109.46643 * 294.99731 * 1 2 3 26 26 H 1.08996 * 109.47326 * 55.00022 * 1 2 3 27 27 H 1.09001 * 109.47393 * 185.00087 * 4 2 1 28 28 H 1.09004 * 109.46818 * 304.99890 * 4 2 1 29 29 H 0.97001 * 119.99762 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47064 * 174.54279 * 13 2 1 31 31 H 1.09006 * 109.47434 * 54.54570 * 13 2 1 32 32 H 1.08999 * 109.25773 * 76.78646 * 15 14 13 33 33 H 1.08997 * 109.53385 * 317.05270 * 15 14 13 34 34 H 1.08993 * 109.60442 * 177.77653 * 16 15 14 35 35 H 1.09003 * 109.60357 * 57.45135 * 16 15 14 36 36 H 1.08998 * 109.60509 * 67.44284 * 20 17 16 37 37 H 1.09007 * 109.60607 * 187.76603 * 20 17 16 38 38 H 1.09001 * 109.46954 * 173.07226 * 23 21 14 39 39 H 1.08992 * 109.47551 * 293.07900 * 23 21 14 40 40 H 1.09010 * 109.46686 * 53.08143 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2494 5 6 1.6413 0.0572 -2.4767 6 1 1.0806 0.9747 -2.3756 7 6 1.9923 -0.4020 -3.7284 8 7 2.6755 -1.5190 -3.8513 9 14 1.4987 0.5633 -5.2496 10 1 0.7422 1.7748 -4.8433 11 1 2.7170 0.9672 -5.9965 12 1 0.6440 -0.2853 -6.1184 13 6 2.0400 -0.7213 1.2491 14 7 1.6609 0.0429 2.4450 15 6 1.1826 -0.8469 3.5054 16 6 0.4144 -0.0398 4.5566 17 16 1.5475 1.1622 5.3161 18 8 0.7828 2.1088 6.0497 19 8 2.5934 0.4541 5.9672 20 6 2.2270 1.9794 3.8409 21 6 2.7590 0.9058 2.8865 22 1 3.5073 0.3028 3.4009 23 6 3.3974 1.5786 1.6696 24 1 -0.3633 -1.0238 -0.0896 25 1 -0.3632 0.4343 0.9314 26 1 -0.3634 0.5894 -0.8418 27 1 3.1264 -0.7994 -1.2057 28 1 1.6054 -1.7198 -1.2953 29 1 2.9228 -1.8418 -4.7320 30 1 3.1257 -0.8067 1.2015 31 1 1.5992 -1.7170 1.2993 32 1 2.0354 -1.3358 3.9763 33 1 0.5244 -1.6030 3.0774 34 1 0.0272 -0.7117 5.3224 35 1 -0.4124 0.4873 4.0806 36 1 1.4427 2.5523 3.3462 37 1 3.0381 2.6465 4.1332 38 1 4.1310 2.3125 2.0035 39 1 3.8905 0.8255 1.0551 40 1 2.6254 2.0774 1.0836 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602473122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:28 Heat of formation + Delta-G solvation = -97.275689 kcal Electronic energy + Delta-G solvation = -20474.705294 eV Core-core repulsion = 17415.624191 eV Total energy + Delta-G solvation = -3059.081102 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.23587 -38.03263 -37.07495 -36.57709 -34.25151 -33.97168 -31.30392 -28.69912 -28.57908 -26.64391 -24.59229 -24.08221 -21.34453 -20.68023 -19.75983 -18.44340 -17.71736 -17.44729 -16.93342 -16.72512 -16.48188 -16.13309 -15.56898 -15.10180 -14.60038 -14.28375 -14.17739 -13.75861 -13.47286 -13.39970 -13.23645 -13.15441 -13.08815 -12.89607 -12.85296 -12.74808 -12.62569 -12.35554 -12.27990 -12.13747 -11.93919 -11.57780 -11.20205 -11.05652 -10.86760 -10.80852 -10.48244 -9.32723 -8.14075 -6.21734 -0.89021 1.40710 1.42438 1.54049 1.74387 2.43536 2.62272 2.72010 3.09753 3.20274 3.53820 3.71876 3.96595 4.00524 4.14369 4.21872 4.35951 4.44610 4.49887 4.64474 4.74175 4.80294 4.84449 4.88840 4.92937 4.98762 5.16555 5.20417 5.31437 5.44265 5.56344 5.59634 5.63945 5.88808 5.95723 6.00484 6.15130 6.37592 6.95796 7.46643 8.97885 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.039940 B = 0.003992 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.882665 B = 7012.244884 C = 7075.121285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.076 4.076 3 H 0.070 0.930 4 C 0.031 3.969 5 C -0.521 4.521 6 H 0.060 0.940 7 C -0.001 4.001 8 N -0.936 5.936 9 Si 0.954 3.046 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.071 3.929 14 N -0.550 5.550 15 C 0.058 3.942 16 C -0.578 4.578 17 S 2.420 3.580 18 O -0.981 6.981 19 O -0.979 6.979 20 C -0.581 4.581 21 C 0.092 3.908 22 H 0.064 0.936 23 C -0.151 4.151 24 H 0.032 0.968 25 H 0.072 0.928 26 H 0.032 0.968 27 H -0.013 1.013 28 H -0.013 1.013 29 H 0.260 0.740 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.928 4.626 16.654 17.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.095 4.095 3 H 0.088 0.912 4 C -0.006 4.006 5 C -0.560 4.560 6 H 0.078 0.922 7 C -0.198 4.198 8 N -0.577 5.577 9 Si 0.780 3.220 10 H -0.186 1.186 11 H -0.208 1.208 12 H -0.208 1.208 13 C -0.056 4.056 14 N -0.275 5.275 15 C -0.071 4.071 16 C -0.710 4.710 17 S 2.608 3.392 18 O -0.979 6.979 19 O -0.976 6.976 20 C -0.712 4.712 21 C -0.017 4.017 22 H 0.081 0.919 23 C -0.209 4.209 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.051 0.949 27 H 0.005 0.995 28 H 0.006 0.994 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.127 0.873 34 H 0.176 0.824 35 H 0.176 0.824 36 H 0.175 0.825 37 H 0.172 0.828 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.051 4.986 17.385 18.341 hybrid contribution 0.472 -0.523 -1.778 1.912 sum -2.579 4.463 15.607 16.436 Atomic orbital electron populations 1.21525 0.95225 1.00039 1.00673 1.21249 0.96326 0.99592 0.92317 0.91160 1.19046 0.94155 0.94541 0.92906 1.21678 1.33844 1.08374 0.92077 0.92210 1.25876 0.95456 0.96033 1.02452 1.70099 1.40606 1.22991 1.24011 0.85554 0.77977 0.79011 0.79449 1.18588 1.20781 1.20849 1.22124 0.98790 0.95935 0.88710 1.61203 1.36638 1.23685 1.06017 1.21951 0.99292 0.94705 0.91111 1.30083 1.15008 1.15766 1.10178 1.07648 0.76615 0.77130 0.77783 1.93544 1.71882 1.62206 1.70220 1.93538 1.56668 1.73934 1.73458 1.30222 1.14366 1.10288 1.16329 1.21338 0.91505 0.92742 0.96143 0.91853 1.22120 1.01090 1.01050 0.96659 0.94911 0.90908 0.94885 0.99492 0.99447 0.93130 0.93616 0.91290 0.92409 0.87287 0.82438 0.82375 0.82489 0.82789 0.90275 0.92869 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.98 8.87 71.98 0.64 -3.34 16 2 C -0.08 -2.75 2.17 -10.79 -0.02 -2.78 16 3 H 0.07 2.54 5.16 -2.39 -0.01 2.53 16 4 C 0.03 1.53 4.45 29.85 0.13 1.66 16 5 C -0.52 -28.25 8.47 25.60 0.22 -28.03 16 6 H 0.06 3.13 7.06 -2.91 -0.02 3.11 16 7 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 8 N -0.94 -55.89 13.29 21.45 0.28 -55.61 16 9 Si 0.95 43.52 29.54 68.60 2.03 45.54 16 10 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 13 C 0.07 2.05 4.04 86.30 0.35 2.40 16 14 N -0.55 -11.98 3.58 -872.50 -3.13 -15.11 16 15 C 0.06 1.00 5.31 86.45 0.46 1.46 16 16 C -0.58 -7.64 6.57 72.04 0.47 -7.16 16 17 S 2.42 43.22 5.35 -56.49 -0.30 42.92 16 18 O -0.98 -24.06 18.11 -127.41 -2.31 -26.36 16 19 O -0.98 -24.26 18.10 -127.41 -2.31 -26.57 16 20 C -0.58 -8.94 5.85 72.04 0.42 -8.51 16 21 C 0.09 1.85 2.33 45.06 0.11 1.96 16 22 H 0.06 1.26 7.94 -2.38 -0.02 1.24 16 23 C -0.15 -3.45 7.71 71.98 0.55 -2.89 16 24 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 25 H 0.07 2.00 7.64 -2.39 -0.02 1.99 16 26 H 0.03 1.22 7.10 -2.39 -0.02 1.21 16 27 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 28 H -0.01 -0.70 8.14 -2.38 -0.02 -0.71 16 29 H 0.26 14.68 8.31 -92.71 -0.77 13.90 16 30 H 0.05 1.37 6.28 -2.39 -0.01 1.35 16 31 H 0.07 1.93 7.31 -2.38 -0.02 1.92 16 32 H 0.06 0.97 7.93 -2.39 -0.02 0.96 16 33 H 0.11 1.74 7.59 -2.39 -0.02 1.72 16 34 H 0.16 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.16 1.68 8.14 -2.39 -0.02 1.67 16 36 H 0.16 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.15 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.05 1.43 6.26 -2.39 -0.01 1.41 16 40 H 0.07 1.74 6.23 -2.38 -0.01 1.72 16 Total: -1.00 -72.67 320.44 -0.93 -73.60 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.01 Total: 6.42 kcal Atomic # 6 Polarization: -48.63 SS G_CDS: 3.79 Total: -44.84 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -2.84 Total: -70.72 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -4.61 Total: -52.93 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 43.22 SS G_CDS: -0.30 Total: 42.92 kcal Total: -72.67 -0.93 -73.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602473122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.672 kcal (2) G-P(sol) polarization free energy of solvation -72.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds