Wall clock time and date at job start Mon Mar 30 2020 01:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47215 * 2 1 4 4 O 1.20761 * 119.99681 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00044 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.47121 * 179.97438 * 5 3 2 7 7 C 1.34773 * 120.00266 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99503 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.50707 * 109.47262 * 179.97438 * 9 7 6 11 11 C 1.37643 * 120.12639 * 265.30991 * 10 9 7 12 12 C 1.38615 * 120.24281 * 180.31829 * 11 10 9 13 13 C 1.38658 * 120.50051 * 359.66907 * 12 11 10 14 14 C 1.37593 * 120.25264 * 0.02562 * 13 12 11 15 15 C 1.40688 * 120.12508 * 84.99750 * 10 9 7 16 16 C 1.41401 * 120.24844 * 359.97438 * 15 10 9 17 17 H 1.07999 * 119.99289 * 334.28466 * 16 15 10 18 18 C 1.39937 * 120.00394 * 154.28925 * 16 15 10 19 19 N 1.30829 * 120.00181 * 334.60180 * 18 16 15 20 20 Si 1.86801 * 120.00083 * 154.60226 * 18 16 15 21 21 H 1.48505 * 109.47160 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47100 * 300.00105 * 20 18 16 23 23 H 1.48502 * 109.47051 * 60.00179 * 20 18 16 24 24 H 1.08999 * 109.46853 * 299.99913 * 1 2 3 25 25 H 1.08996 * 109.47513 * 59.99833 * 1 2 3 26 26 H 1.09003 * 109.46686 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47360 * 240.00085 * 2 1 3 28 28 H 1.09003 * 109.47342 * 119.99819 * 2 1 3 29 29 H 1.09001 * 109.47130 * 60.00265 * 5 3 2 30 30 H 1.08991 * 109.47325 * 300.00110 * 5 3 2 31 31 H 0.97000 * 119.99705 * 0.02562 * 6 5 3 32 32 H 1.09001 * 109.46892 * 59.99768 * 9 7 6 33 33 H 1.08991 * 109.47294 * 299.99778 * 9 7 6 34 34 H 1.07998 * 119.87840 * 0.02562 * 11 10 9 35 35 H 1.07996 * 119.74749 * 179.68975 * 12 11 10 36 36 H 1.08000 * 119.87393 * 180.02562 * 13 12 11 37 37 H 1.07996 * 120.12941 * 180.02562 * 14 13 12 38 38 H 0.96998 * 119.99709 * 354.17607 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2476 2.3387 -0.0005 5 6 3.5139 1.6962 -0.0006 6 7 3.7417 3.1434 -0.0011 7 6 4.9994 3.6277 -0.0022 8 8 5.9427 2.8654 -0.0023 9 6 5.2336 5.1163 -0.0021 10 6 6.7153 5.3918 -0.0028 11 6 7.3773 5.6136 1.1834 12 6 8.7388 5.8737 1.1850 13 6 9.4504 5.9068 -0.0046 14 6 8.8104 5.6818 -1.2016 15 6 7.4283 5.4167 -1.2154 16 6 6.7601 5.1832 -2.4395 17 1 5.8525 4.5981 -2.4561 18 6 7.2749 5.7100 -3.6293 19 7 8.0298 6.7781 -3.5992 20 14 6.8843 4.8882 -5.2607 21 1 7.5441 5.6350 -6.3617 22 1 7.3829 3.4896 -5.2423 23 1 5.4149 4.8871 -5.4751 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9647 1.2575 -0.8908 30 1 3.9654 1.2573 0.8890 31 1 2.9872 3.7531 -0.0006 32 1 4.7833 5.5549 0.8884 33 1 4.7817 5.5553 -0.8915 34 1 6.8330 5.5896 2.1159 35 1 9.2493 6.0516 2.1200 36 1 10.5110 6.1100 0.0085 37 1 9.3666 5.7077 -2.1270 38 1 8.1639 7.2538 -2.7645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768367418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:56 Heat of formation + Delta-G solvation = -74.100743 kcal Electronic energy + Delta-G solvation = -20616.505398 eV Core-core repulsion = 17422.985285 eV Total energy + Delta-G solvation = -3193.520112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.13407 -38.94231 -37.45278 -34.10363 -33.81197 -33.19671 -31.81735 -29.19299 -28.83465 -26.52707 -24.89486 -23.83935 -20.90864 -20.63259 -20.03503 -19.38122 -17.74565 -16.96428 -16.17250 -16.12541 -15.48242 -15.04950 -14.84954 -14.23836 -14.20735 -13.96332 -13.70314 -13.32998 -12.90613 -12.66109 -12.44453 -12.25809 -12.03502 -11.97932 -11.71117 -11.49081 -11.20002 -11.10042 -10.82301 -10.44181 -10.36572 -9.93987 -9.61813 -9.35277 -9.26332 -8.92859 -8.83919 -7.52341 -7.47301 -7.09113 -4.38805 1.66937 2.76582 2.88267 3.17559 3.27230 3.31177 3.37810 3.39234 3.90775 4.05050 4.60846 4.62509 4.76519 4.91269 5.28028 5.32066 5.37939 5.49257 5.50364 5.61120 5.74076 5.87706 5.95729 6.07816 6.20843 6.37000 6.39499 6.63492 6.72653 7.03652 7.20635 7.24388 7.45502 7.70365 7.86008 7.88115 7.90918 7.99071 8.24587 8.38312 8.78252 8.82774 8.96122 10.10523 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.016343 B = 0.005027 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.902757 B = 5568.205889 C = 6876.194097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.172 4.172 3 C 0.351 3.649 4 O -0.450 6.450 5 C 0.068 3.932 6 N -0.741 5.741 7 C 0.517 3.483 8 O -0.522 6.522 9 C -0.069 4.069 10 C -0.185 4.185 11 C -0.069 4.069 12 C -0.253 4.253 13 C -0.086 4.086 14 C -0.216 4.216 15 C 0.116 3.884 16 C -0.517 4.517 17 H 0.072 0.928 18 C 0.041 3.959 19 N -0.799 5.799 20 Si 1.060 2.940 21 H -0.274 1.274 22 H -0.275 1.275 23 H -0.277 1.277 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.405 0.595 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.563 -9.478 4.383 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.210 4.210 3 C 0.226 3.774 4 O -0.323 6.323 5 C -0.057 4.057 6 N -0.399 5.399 7 C 0.305 3.695 8 O -0.395 6.395 9 C -0.109 4.109 10 C -0.186 4.186 11 C -0.087 4.087 12 C -0.273 4.273 13 C -0.105 4.105 14 C -0.235 4.235 15 C 0.114 3.886 16 C -0.545 4.545 17 H 0.090 0.910 18 C -0.181 4.181 19 N -0.422 5.422 20 Si 0.884 3.116 21 H -0.199 1.199 22 H -0.201 1.201 23 H -0.203 1.203 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.241 0.759 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.123 0.877 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.932 -9.415 2.744 14.686 hybrid contribution -0.507 0.003 1.738 1.810 sum -11.439 -9.413 4.482 15.477 Atomic orbital electron populations 1.21594 0.93609 1.01871 1.03121 1.22017 0.98402 0.95454 1.05140 1.24876 0.90759 0.91546 0.70240 1.90384 1.58668 1.47698 1.35554 1.21597 0.94467 0.84882 1.04731 1.45985 1.09280 1.06058 1.78542 1.21258 0.81358 0.92248 0.74665 1.90680 1.41691 1.59803 1.47365 1.20236 0.97168 0.90474 1.03009 1.19006 0.92020 1.13834 0.93776 1.20362 0.94239 0.98652 0.95467 1.20259 0.94553 1.16222 0.96221 1.20604 0.97332 0.99249 0.93289 1.21138 0.94669 1.11148 0.96587 1.17391 0.91138 0.88022 0.92092 1.20444 1.10838 1.30842 0.92415 0.91013 1.26923 0.92241 0.94490 1.04464 1.70450 1.26764 1.11457 1.33545 0.83711 0.77167 0.76646 0.74056 1.19862 1.20061 1.20263 0.92145 0.92058 0.91967 0.87972 0.88070 0.88206 0.88413 0.75920 0.90485 0.88517 0.89596 0.89453 0.89384 0.87747 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.20 37.16 0.34 -0.72 16 2 C -0.17 -1.20 6.36 -27.88 -0.18 -1.37 16 3 C 0.35 3.65 7.23 -29.04 -0.21 3.44 16 4 O -0.45 -5.97 15.29 6.00 0.09 -5.87 16 5 C 0.07 0.84 6.09 -5.19 -0.03 0.81 16 6 N -0.74 -11.42 5.53 -61.48 -0.34 -11.76 16 7 C 0.52 10.26 7.46 -10.99 -0.08 10.18 16 8 O -0.52 -12.45 16.03 5.56 0.09 -12.36 16 9 C -0.07 -1.39 5.18 -29.03 -0.15 -1.54 16 10 C -0.18 -4.49 4.43 -103.91 -0.46 -4.95 16 11 C -0.07 -1.60 9.66 -39.66 -0.38 -1.98 16 12 C -0.25 -5.89 10.05 -39.29 -0.39 -6.29 16 13 C -0.09 -2.09 10.02 -39.66 -0.40 -2.49 16 14 C -0.22 -5.74 7.95 -38.87 -0.31 -6.05 16 15 C 0.12 3.12 5.30 -106.82 -0.57 2.55 16 16 C -0.52 -13.77 8.08 -37.74 -0.30 -14.08 16 17 H 0.07 1.88 6.73 -52.49 -0.35 1.53 16 18 C 0.04 1.04 4.94 -17.34 -0.09 0.95 16 19 N -0.80 -21.35 12.31 55.55 0.68 -20.67 16 20 Si 1.06 22.12 30.00 -169.99 -5.10 17.02 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 24 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 25 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.40 5.67 7.44 -40.82 -0.30 5.37 16 32 H 0.08 1.31 8.05 -51.93 -0.42 0.89 16 33 H 0.10 1.94 7.06 -51.93 -0.37 1.58 16 34 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 37 H 0.10 2.85 6.49 -52.49 -0.34 2.51 16 38 H 0.30 8.19 6.68 -40.82 -0.27 7.92 16 LS Contribution 325.98 15.07 4.91 4.91 Total: -1.00 -32.07 325.98 -7.95 -40.02 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -5.07 Total: 10.23 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -3.21 Total: -21.53 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.34 Total: -32.43 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.18 Total: -18.23 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.10 Total: 17.02 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.07 -7.95 -40.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768367418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.079 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds