Wall clock time and date at job start Mon Mar 30 2020 01:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47215 * 2 1 4 4 O 1.20761 * 119.99681 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00044 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.47121 * 179.97438 * 5 3 2 7 7 C 1.34773 * 120.00266 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99503 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.50707 * 109.47262 * 179.97438 * 9 7 6 11 11 C 1.37643 * 120.12639 * 265.30991 * 10 9 7 12 12 C 1.38615 * 120.24281 * 180.31829 * 11 10 9 13 13 C 1.38658 * 120.50051 * 359.66907 * 12 11 10 14 14 C 1.37593 * 120.25264 * 0.02562 * 13 12 11 15 15 C 1.40688 * 120.12508 * 84.99750 * 10 9 7 16 16 C 1.41401 * 120.24844 * 359.97438 * 15 10 9 17 17 H 1.07999 * 119.99289 * 334.28466 * 16 15 10 18 18 C 1.39937 * 120.00394 * 154.28925 * 16 15 10 19 19 N 1.30829 * 120.00181 * 334.60180 * 18 16 15 20 20 Si 1.86801 * 120.00083 * 154.60226 * 18 16 15 21 21 H 1.48505 * 109.47160 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47100 * 300.00105 * 20 18 16 23 23 H 1.48502 * 109.47051 * 60.00179 * 20 18 16 24 24 H 1.08999 * 109.46853 * 299.99913 * 1 2 3 25 25 H 1.08996 * 109.47513 * 59.99833 * 1 2 3 26 26 H 1.09003 * 109.46686 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47360 * 240.00085 * 2 1 3 28 28 H 1.09003 * 109.47342 * 119.99819 * 2 1 3 29 29 H 1.09001 * 109.47130 * 60.00265 * 5 3 2 30 30 H 1.08991 * 109.47325 * 300.00110 * 5 3 2 31 31 H 0.97000 * 119.99705 * 0.02562 * 6 5 3 32 32 H 1.09001 * 109.46892 * 59.99768 * 9 7 6 33 33 H 1.08991 * 109.47294 * 299.99778 * 9 7 6 34 34 H 1.07998 * 119.87840 * 0.02562 * 11 10 9 35 35 H 1.07996 * 119.74749 * 179.68975 * 12 11 10 36 36 H 1.08000 * 119.87393 * 180.02562 * 13 12 11 37 37 H 1.07996 * 120.12941 * 180.02562 * 14 13 12 38 38 H 0.96998 * 119.99709 * 354.17607 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2476 2.3387 -0.0005 5 6 3.5139 1.6962 -0.0006 6 7 3.7417 3.1434 -0.0011 7 6 4.9994 3.6277 -0.0022 8 8 5.9427 2.8654 -0.0023 9 6 5.2336 5.1163 -0.0021 10 6 6.7153 5.3918 -0.0028 11 6 7.3773 5.6136 1.1834 12 6 8.7388 5.8737 1.1850 13 6 9.4504 5.9068 -0.0046 14 6 8.8104 5.6818 -1.2016 15 6 7.4283 5.4167 -1.2154 16 6 6.7601 5.1832 -2.4395 17 1 5.8525 4.5981 -2.4561 18 6 7.2749 5.7100 -3.6293 19 7 8.0298 6.7781 -3.5992 20 14 6.8843 4.8882 -5.2607 21 1 7.5441 5.6350 -6.3617 22 1 7.3829 3.4896 -5.2423 23 1 5.4149 4.8871 -5.4751 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9647 1.2575 -0.8908 30 1 3.9654 1.2573 0.8890 31 1 2.9872 3.7531 -0.0006 32 1 4.7833 5.5549 0.8884 33 1 4.7817 5.5553 -0.8915 34 1 6.8330 5.5896 2.1159 35 1 9.2493 6.0516 2.1200 36 1 10.5110 6.1100 0.0085 37 1 9.3666 5.7077 -2.1270 38 1 8.1639 7.2538 -2.7645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768367418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:55 Heat of formation + Delta-G solvation = -93.886186 kcal Electronic energy + Delta-G solvation = -20617.363359 eV Core-core repulsion = 17422.985285 eV Total energy + Delta-G solvation = -3194.378074 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.25865 -40.36508 -39.22888 -35.74311 -35.44856 -33.85679 -33.55068 -31.10875 -30.09181 -28.06898 -26.75451 -24.69861 -22.82664 -22.26820 -21.32286 -20.56066 -19.61369 -18.26021 -17.44091 -17.13490 -16.70680 -16.52218 -16.47434 -15.92025 -15.68664 -15.34708 -15.17441 -14.48480 -14.27827 -14.15785 -13.86849 -13.56646 -13.52245 -13.21989 -12.98776 -12.74960 -12.61064 -12.60115 -12.24035 -12.02631 -11.98589 -11.49347 -11.22097 -10.99645 -10.84161 -10.70815 -10.17440 -9.44497 -9.43052 -9.05793 -6.39862 0.84655 0.90602 0.99091 1.47041 1.62325 1.72452 1.76312 2.16129 2.31697 2.71527 2.96895 3.58116 3.94389 4.04778 4.22346 4.27671 4.29421 4.32822 4.38794 4.48583 4.52728 4.58451 4.70913 4.80023 4.96586 5.01293 5.06267 5.08117 5.31693 5.32536 5.38670 5.49861 5.79652 5.84184 5.98743 6.05475 6.29624 6.38306 6.44867 6.52367 6.86600 7.01898 7.30488 8.08563 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.016343 B = 0.005027 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.902757 B = 5568.205889 C = 6876.194097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.165 4.165 3 C 0.361 3.639 4 O -0.482 6.482 5 C 0.059 3.941 6 N -0.727 5.727 7 C 0.520 3.480 8 O -0.568 6.568 9 C -0.071 4.071 10 C -0.190 4.190 11 C -0.080 4.080 12 C -0.250 4.250 13 C -0.096 4.096 14 C -0.245 4.245 15 C 0.086 3.914 16 C -0.543 4.543 17 H 0.067 0.933 18 C 0.005 3.995 19 N -0.820 5.820 20 Si 1.108 2.892 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.256 1.256 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.127 0.873 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.412 0.588 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.946 -10.928 5.368 17.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.203 4.203 3 C 0.238 3.762 4 O -0.357 6.357 5 C -0.065 4.065 6 N -0.383 5.383 7 C 0.308 3.692 8 O -0.446 6.446 9 C -0.110 4.110 10 C -0.192 4.192 11 C -0.098 4.098 12 C -0.269 4.269 13 C -0.115 4.115 14 C -0.264 4.264 15 C 0.084 3.916 16 C -0.571 4.571 17 H 0.085 0.915 18 C -0.211 4.211 19 N -0.443 5.443 20 Si 0.926 3.074 21 H -0.194 1.194 22 H -0.197 1.197 23 H -0.180 1.180 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.102 0.898 27 H 0.141 0.859 28 H 0.145 0.855 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.250 0.750 32 H 0.129 0.871 33 H 0.111 0.889 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.363 -10.866 3.753 16.882 hybrid contribution -0.088 0.443 1.612 1.674 sum -12.451 -10.423 5.364 17.101 Atomic orbital electron populations 1.21613 0.93863 1.02889 1.01925 1.22075 0.98014 0.92848 1.07312 1.25142 0.89285 0.92945 0.68802 1.90388 1.58968 1.48997 1.37395 1.21909 0.96412 0.82679 1.05498 1.45810 1.08012 1.07965 1.76532 1.21038 0.82093 0.91708 0.74325 1.90661 1.43300 1.60623 1.50049 1.20264 0.94917 0.91398 1.04471 1.19478 0.94177 1.12164 0.93370 1.20808 0.94667 0.97901 0.96463 1.20717 0.94899 1.14227 0.97019 1.20907 0.98683 0.98861 0.93004 1.21153 0.95068 1.13373 0.96821 1.17769 0.91607 0.88834 0.93428 1.20550 1.11356 1.31921 0.93285 0.91459 1.28234 0.91306 0.94064 1.07539 1.70555 1.28669 1.12563 1.32545 0.83127 0.78265 0.75679 0.70368 1.19379 1.19716 1.17985 0.93203 0.93468 0.89811 0.85867 0.85495 0.88039 0.87158 0.75000 0.87051 0.88928 0.86304 0.86235 0.87167 0.89788 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.20 71.98 0.66 -1.13 16 2 C -0.17 -1.78 6.36 29.85 0.19 -1.59 16 3 C 0.36 6.78 7.23 29.10 0.21 6.99 16 4 O -0.48 -12.14 15.29 -1.45 -0.02 -12.16 16 5 C 0.06 1.35 6.09 85.63 0.52 1.87 16 6 N -0.73 -21.45 5.53 -466.80 -2.58 -24.03 16 7 C 0.52 20.24 7.46 87.66 0.65 20.90 16 8 O -0.57 -27.03 16.03 -3.04 -0.05 -27.08 16 9 C -0.07 -2.80 5.18 29.10 0.15 -2.65 16 10 C -0.19 -9.20 4.43 -19.40 -0.09 -9.28 16 11 C -0.08 -3.59 9.66 22.22 0.21 -3.37 16 12 C -0.25 -11.17 10.05 22.46 0.23 -10.94 16 13 C -0.10 -4.66 10.02 22.22 0.22 -4.44 16 14 C -0.24 -13.41 7.95 22.73 0.18 -13.23 16 15 C 0.09 4.73 5.30 -21.29 -0.11 4.62 16 16 C -0.54 -29.72 8.08 23.46 0.19 -29.53 16 17 H 0.07 3.62 6.73 -2.91 -0.02 3.60 16 18 C 0.00 0.25 4.94 85.25 0.42 0.67 16 19 N -0.82 -45.41 12.31 21.82 0.27 -45.14 16 20 Si 1.11 45.00 30.00 68.60 2.06 47.06 16 21 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 24 H 0.05 0.72 8.10 -2.39 -0.02 0.70 16 25 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 26 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.41 10.98 7.44 -92.71 -0.69 10.29 16 32 H 0.11 3.53 8.05 -2.39 -0.02 3.51 16 33 H 0.09 3.72 7.06 -2.39 -0.02 3.70 16 34 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 35 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 36 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 37 H 0.08 4.83 6.49 -2.91 -0.02 4.81 16 38 H 0.28 16.33 6.68 -92.71 -0.62 15.71 16 Total: -1.00 -71.55 325.98 3.85 -67.70 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: 0.53 Total: 34.77 kcal Atomic # 6 Polarization: -44.76 SS G_CDS: 3.64 Total: -41.12 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: -2.31 Total: -69.17 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -0.07 Total: -39.24 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.06 Total: 47.06 kcal Total: -71.55 3.85 -67.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768367418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.183 kcal (2) G-P(sol) polarization free energy of solvation -71.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds