Wall clock time and date at job start Mon Mar 30 2020 02:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47352 * 2 1 4 4 C 1.50708 * 109.47102 * 240.00105 * 2 1 3 5 5 H 1.08002 * 119.99868 * 240.00275 * 4 2 1 6 6 C 1.37872 * 119.99981 * 60.00066 * 4 2 1 7 7 N 1.31518 * 119.99990 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00023 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47293 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47141 * 120.00415 * 8 6 4 11 11 H 1.48498 * 109.47026 * 239.99966 * 8 6 4 12 12 N 1.46504 * 109.47070 * 120.00467 * 2 1 3 13 13 C 1.34773 * 119.99446 * 274.99875 * 12 2 1 14 14 O 1.21582 * 120.00257 * 359.97438 * 13 12 2 15 15 C 1.47607 * 119.99843 * 179.97438 * 13 12 2 16 16 C 1.39755 * 120.26153 * 359.97438 * 15 13 12 17 17 C 1.37472 * 120.19750 * 179.83538 * 16 15 13 18 18 C 1.39582 * 120.42789 * 359.97438 * 17 16 15 19 19 C 1.39174 * 119.11283 * 0.38371 * 18 17 16 20 20 C 1.37312 * 120.93056 * 359.42192 * 19 18 17 21 21 C 1.51681 * 107.00712 * 179.00826 * 19 18 17 22 22 C 1.54701 * 101.91609 * 344.84556 * 21 19 18 23 23 H 1.08995 * 110.74691 * 266.95732 * 22 21 19 24 24 C 1.53002 * 110.90104 * 143.69241 * 22 21 19 25 25 O 1.36004 * 129.72744 * 180.95834 * 18 17 16 26 26 H 1.08997 * 109.47472 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47106 * 300.00117 * 1 2 3 28 28 H 1.09010 * 109.47224 * 59.99689 * 1 2 3 29 29 H 0.96998 * 120.00128 * 180.02562 * 7 6 4 30 30 H 0.96998 * 119.99887 * 94.99746 * 12 2 1 31 31 H 1.07996 * 119.90385 * 359.55521 * 16 15 13 32 32 H 1.08005 * 119.78823 * 179.97438 * 17 16 15 33 33 H 1.08003 * 120.07607 * 180.40879 * 20 19 18 34 34 H 1.08993 * 110.93814 * 103.00316 * 21 19 18 35 35 H 1.08996 * 110.93844 * 226.68944 * 21 19 18 36 36 H 1.09003 * 109.46917 * 305.07299 * 24 22 21 37 37 H 1.08997 * 109.47331 * 65.06555 * 24 22 21 38 38 H 1.08999 * 109.47440 * 185.07046 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1454 -2.2877 -3.6039 10 1 1.1660 -1.5865 -4.8162 11 1 3.1466 -0.1873 -4.8165 12 7 2.0183 -0.6907 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8583 1.1614 2.4116 15 6 2.6385 -0.7144 3.5624 16 6 2.9714 -2.0705 3.5061 17 6 3.4322 -2.7166 4.6286 18 6 3.5727 -2.0265 5.8338 19 6 3.2324 -0.6780 5.8856 20 6 2.7749 -0.0222 4.7694 21 6 3.4650 -0.2163 7.3116 22 6 3.5838 -1.5608 8.0674 23 1 2.6163 -1.8668 8.4654 24 6 4.6229 -1.4680 9.1865 25 8 4.0213 -2.4663 7.0401 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 0.7089 1.1615 -3.4844 30 1 2.2489 -1.6319 1.1525 31 1 2.8621 -2.6137 2.5791 32 1 3.6872 -3.7648 4.5778 33 1 2.5211 1.0262 4.8236 34 1 4.3885 0.3574 7.3896 35 1 2.6166 0.3624 7.6769 36 1 5.5734 -1.1310 8.7727 37 1 4.2828 -0.7579 9.9402 38 1 4.7531 -2.4488 9.6439 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824688301.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:27 Heat of formation + Delta-G solvation = -51.252072 kcal Electronic energy + Delta-G solvation = -20482.027153 eV Core-core repulsion = 17289.497834 eV Total energy + Delta-G solvation = -3192.529320 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.29932 -39.13737 -36.97015 -34.80334 -33.39464 -32.49148 -31.28351 -30.30608 -28.72475 -26.67261 -25.25511 -23.64600 -21.99069 -21.87217 -20.96898 -19.44415 -17.73668 -17.63218 -16.80499 -15.95069 -15.53667 -15.13617 -14.65031 -14.29301 -14.14150 -13.72833 -13.67189 -13.29645 -13.11605 -13.03450 -12.60966 -12.40244 -12.34889 -12.21105 -11.68952 -11.50652 -11.09125 -11.02136 -10.88981 -10.77947 -10.68354 -10.29629 -10.23503 -9.14732 -9.03032 -8.96526 -8.55545 -8.23724 -7.86255 -6.12152 -4.21405 0.98588 1.30908 2.96741 3.24089 3.25567 3.32020 3.34796 3.98698 4.13378 4.22931 4.31461 4.41722 4.63477 4.76518 4.87577 5.01609 5.17691 5.20343 5.26441 5.32517 5.36615 5.47473 5.59634 5.65217 5.72606 5.98800 6.20965 6.29377 6.43112 6.48219 6.84091 6.97799 7.06157 7.15817 7.45242 7.57026 7.70163 7.92181 8.15103 8.65696 8.78182 9.10788 9.46155 10.93969 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.041061 B = 0.003433 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.742553 B = 8153.218168 C = 8592.410374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.702 5.702 13 C 0.546 3.454 14 O -0.554 6.554 15 C -0.149 4.149 16 C -0.052 4.052 17 C -0.145 4.145 18 C 0.120 3.880 19 C -0.187 4.187 20 C -0.015 4.015 21 C -0.104 4.104 22 C 0.075 3.925 23 H 0.087 0.913 24 C -0.149 4.149 25 O -0.302 6.302 26 H 0.027 0.973 27 H 0.015 0.985 28 H 0.091 0.909 29 H 0.264 0.736 30 H 0.388 0.612 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.960 -6.278 19.848 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.350 5.350 13 C 0.332 3.668 14 O -0.434 6.434 15 C -0.152 4.152 16 C -0.071 4.071 17 C -0.164 4.164 18 C 0.074 3.926 19 C -0.188 4.188 20 C -0.034 4.034 21 C -0.141 4.141 22 C 0.020 3.980 23 H 0.105 0.895 24 C -0.206 4.206 25 O -0.216 6.216 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.221 0.779 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.155 0.845 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.788 -5.504 19.758 21.062 hybrid contribution 0.325 -0.816 -0.885 1.247 sum 5.113 -6.320 18.874 20.550 Atomic orbital electron populations 1.22082 0.98358 0.99187 1.00972 1.18784 0.91098 0.94062 0.79841 0.93209 1.21255 1.32406 1.13235 0.90297 0.91985 1.24891 0.94808 0.94957 0.99077 1.69915 1.35917 1.22453 1.23789 0.86386 0.78598 0.79532 0.82538 1.19705 1.20875 1.20872 1.46476 1.64581 1.13521 1.10391 1.18049 0.78781 0.86729 0.83241 1.90725 1.51834 1.15652 1.85180 1.20154 1.05668 0.94398 0.95008 1.21121 0.94712 0.93490 0.97781 1.20142 1.05871 1.00400 0.89971 1.19757 0.93731 0.92069 0.87057 1.20652 1.07560 0.94169 0.96419 1.20370 0.93329 1.00256 0.89425 1.21849 1.03812 0.97633 0.90778 1.23405 0.98615 0.87511 0.88505 0.89527 1.21880 0.98740 1.03169 0.96824 1.86804 1.70642 1.50467 1.13730 0.95416 0.96573 0.89082 0.92615 0.77870 0.84399 0.85013 0.84487 0.89025 0.88951 0.91386 0.90250 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 2 C 0.26 6.80 2.56 -69.08 -0.18 6.62 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 4 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.96 11.32 55.43 0.63 -24.34 16 8 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.70 -15.01 5.02 -55.95 -0.28 -15.29 16 13 C 0.55 11.49 7.73 -12.44 -0.10 11.40 16 14 O -0.55 -13.66 16.02 5.29 0.08 -13.58 16 15 C -0.15 -2.49 5.88 -104.92 -0.62 -3.11 16 16 C -0.05 -0.73 9.52 -39.29 -0.37 -1.10 16 17 C -0.15 -1.84 10.05 -39.36 -0.40 -2.24 16 18 C 0.12 1.58 7.04 -38.73 -0.27 1.30 16 19 C -0.19 -2.44 6.26 -104.13 -0.65 -3.09 16 20 C -0.01 -0.23 9.58 -39.33 -0.38 -0.60 16 21 C -0.10 -0.97 6.65 -26.50 -0.18 -1.15 16 22 C 0.08 0.66 4.25 -25.84 -0.11 0.55 16 23 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 24 C -0.15 -0.93 9.61 37.16 0.36 -0.57 16 25 O -0.30 -3.65 10.80 -19.75 -0.21 -3.87 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 2.47 6.07 -51.92 -0.32 2.16 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 7.10 6.58 -40.82 -0.27 6.83 16 31 H 0.14 1.67 6.40 -52.49 -0.34 1.33 16 32 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 33 H 0.14 2.10 7.66 -52.48 -0.40 1.69 16 34 H 0.09 0.78 7.91 -51.93 -0.41 0.36 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 319.70 15.07 4.82 4.82 Total: -1.00 -31.70 319.70 -7.97 -39.67 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.05 Total: 5.12 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.94 Total: -8.18 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.35 Total: -39.63 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.13 Total: -17.44 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.70 -7.97 -39.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824688301.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.580 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds