Wall clock time and date at job start Mon Mar 30 2020 02:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47352 * 2 1 4 4 C 1.50708 * 109.47102 * 240.00105 * 2 1 3 5 5 H 1.08002 * 119.99868 * 240.00275 * 4 2 1 6 6 C 1.37872 * 119.99981 * 60.00066 * 4 2 1 7 7 N 1.31518 * 119.99990 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00023 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47293 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47141 * 120.00415 * 8 6 4 11 11 H 1.48498 * 109.47026 * 239.99966 * 8 6 4 12 12 N 1.46504 * 109.47070 * 120.00467 * 2 1 3 13 13 C 1.34773 * 119.99446 * 274.99875 * 12 2 1 14 14 O 1.21582 * 120.00257 * 359.97438 * 13 12 2 15 15 C 1.47607 * 119.99843 * 179.97438 * 13 12 2 16 16 C 1.39755 * 120.26153 * 359.97438 * 15 13 12 17 17 C 1.37472 * 120.19750 * 179.83538 * 16 15 13 18 18 C 1.39582 * 120.42789 * 359.97438 * 17 16 15 19 19 C 1.39174 * 119.11283 * 0.38371 * 18 17 16 20 20 C 1.37312 * 120.93056 * 359.42192 * 19 18 17 21 21 C 1.51681 * 107.00712 * 179.00826 * 19 18 17 22 22 C 1.54701 * 101.91609 * 344.84556 * 21 19 18 23 23 H 1.08995 * 110.74691 * 266.95732 * 22 21 19 24 24 C 1.53002 * 110.90104 * 143.69241 * 22 21 19 25 25 O 1.36004 * 129.72744 * 180.95834 * 18 17 16 26 26 H 1.08997 * 109.47472 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47106 * 300.00117 * 1 2 3 28 28 H 1.09010 * 109.47224 * 59.99689 * 1 2 3 29 29 H 0.96998 * 120.00128 * 180.02562 * 7 6 4 30 30 H 0.96998 * 119.99887 * 94.99746 * 12 2 1 31 31 H 1.07996 * 119.90385 * 359.55521 * 16 15 13 32 32 H 1.08005 * 119.78823 * 179.97438 * 17 16 15 33 33 H 1.08003 * 120.07607 * 180.40879 * 20 19 18 34 34 H 1.08993 * 110.93814 * 103.00316 * 21 19 18 35 35 H 1.08996 * 110.93844 * 226.68944 * 21 19 18 36 36 H 1.09003 * 109.46917 * 305.07299 * 24 22 21 37 37 H 1.08997 * 109.47331 * 65.06555 * 24 22 21 38 38 H 1.08999 * 109.47440 * 185.07046 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1454 -2.2877 -3.6039 10 1 1.1660 -1.5865 -4.8162 11 1 3.1466 -0.1873 -4.8165 12 7 2.0183 -0.6907 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8583 1.1614 2.4116 15 6 2.6385 -0.7144 3.5624 16 6 2.9714 -2.0705 3.5061 17 6 3.4322 -2.7166 4.6286 18 6 3.5727 -2.0265 5.8338 19 6 3.2324 -0.6780 5.8856 20 6 2.7749 -0.0222 4.7694 21 6 3.4650 -0.2163 7.3116 22 6 3.5838 -1.5608 8.0674 23 1 2.6163 -1.8668 8.4654 24 6 4.6229 -1.4680 9.1865 25 8 4.0213 -2.4663 7.0401 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 0.7089 1.1615 -3.4844 30 1 2.2489 -1.6319 1.1525 31 1 2.8621 -2.6137 2.5791 32 1 3.6872 -3.7648 4.5778 33 1 2.5211 1.0262 4.8236 34 1 4.3885 0.3574 7.3896 35 1 2.6166 0.3624 7.6769 36 1 5.5734 -1.1310 8.7727 37 1 4.2828 -0.7579 9.9402 38 1 4.7531 -2.4488 9.6439 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824688301.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:27 Heat of formation + Delta-G solvation = -71.348212 kcal Electronic energy + Delta-G solvation = -20482.898587 eV Core-core repulsion = 17289.497834 eV Total energy + Delta-G solvation = -3193.400754 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.25636 -40.70628 -38.18828 -36.73430 -34.46172 -34.14537 -32.36523 -31.51948 -30.42096 -27.54589 -27.33784 -25.00855 -22.94706 -22.71857 -22.67829 -21.13857 -19.31593 -18.56682 -17.99309 -17.53391 -17.10925 -16.35050 -16.33089 -15.83874 -15.27643 -15.17053 -14.75891 -14.51988 -14.22165 -14.10626 -13.89844 -13.77123 -13.37254 -13.33116 -13.02082 -12.94897 -12.84214 -12.74081 -12.29356 -12.21101 -12.11646 -11.83961 -11.67956 -11.10759 -10.89470 -10.60899 -10.02202 -9.84983 -9.20821 -8.17982 -6.35740 -0.19575 0.24857 1.45222 1.46002 1.58419 1.84360 2.16854 2.33261 2.56292 2.79291 3.12739 3.39075 3.53990 3.76639 3.89203 4.01908 4.12392 4.17613 4.24269 4.51132 4.65831 4.72077 4.75469 4.85102 4.90855 4.91123 5.05793 5.08313 5.11369 5.23241 5.25586 5.29226 5.43189 5.45064 5.58959 5.67645 5.89368 6.08016 6.09552 6.71403 6.91115 7.30400 7.48601 8.88894 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.041061 B = 0.003433 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.742553 B = 8153.218168 C = 8592.410374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H -0.001 1.001 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.975 3.025 9 H -0.258 1.258 10 H -0.278 1.278 11 H -0.284 1.284 12 N -0.698 5.698 13 C 0.544 3.456 14 O -0.601 6.601 15 C -0.175 4.175 16 C -0.045 4.045 17 C -0.143 4.143 18 C 0.123 3.877 19 C -0.191 4.191 20 C -0.025 4.025 21 C -0.103 4.103 22 C 0.070 3.930 23 H 0.101 0.899 24 C -0.145 4.145 25 O -0.310 6.310 26 H 0.042 0.958 27 H 0.011 0.989 28 H 0.069 0.931 29 H 0.266 0.734 30 H 0.404 0.596 31 H 0.155 0.845 32 H 0.160 0.840 33 H 0.126 0.874 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.063 0.937 37 H 0.102 0.898 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.078 -8.694 21.361 23.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.017 0.983 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.182 1.182 10 H -0.204 1.204 11 H -0.210 1.210 12 N -0.346 5.346 13 C 0.333 3.667 14 O -0.485 6.485 15 C -0.178 4.178 16 C -0.063 4.063 17 C -0.161 4.161 18 C 0.076 3.924 19 C -0.191 4.191 20 C -0.044 4.044 21 C -0.140 4.140 22 C 0.015 3.985 23 H 0.119 0.881 24 C -0.202 4.202 25 O -0.224 6.224 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.241 0.759 31 H 0.172 0.828 32 H 0.178 0.822 33 H 0.144 0.856 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.921 -7.961 21.307 23.503 hybrid contribution 0.007 -0.055 -1.192 1.193 sum 5.928 -8.016 20.115 22.450 Atomic orbital electron populations 1.21909 0.98149 0.99630 0.99629 1.18403 0.91253 0.91987 0.81708 0.98289 1.21571 1.32641 1.13626 0.90663 0.90664 1.25826 0.94837 0.95587 1.02391 1.70063 1.37007 1.23946 1.24616 0.85255 0.78097 0.78516 0.78211 1.18212 1.20356 1.21015 1.46194 1.64738 1.14201 1.09492 1.18696 0.77567 0.86273 0.84141 1.90687 1.53881 1.17868 1.86014 1.19803 1.08783 0.95722 0.93504 1.21242 0.93909 0.92137 0.99060 1.20412 1.04847 1.01640 0.89236 1.20016 0.92495 0.92088 0.87755 1.20931 1.06372 0.94445 0.97397 1.20334 0.94157 0.99952 0.89953 1.22000 1.05077 0.98464 0.88419 1.23744 1.00223 0.86305 0.88178 0.88101 1.21914 0.97795 1.04167 0.96323 1.86814 1.70478 1.51394 1.13747 0.93876 0.96996 0.91271 0.92500 0.75912 0.82762 0.82199 0.85616 0.87975 0.87224 0.91823 0.87902 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.98 9.26 71.98 0.67 -6.32 16 2 C 0.27 14.38 2.56 44.25 0.11 14.50 16 3 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 4 C -0.55 -29.26 8.73 25.60 0.22 -29.04 16 5 H 0.08 3.74 7.74 -2.91 -0.02 3.71 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -53.11 11.32 21.45 0.24 -52.87 16 8 Si 0.97 42.11 29.54 68.60 2.03 44.14 16 9 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 10 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 N -0.70 -30.42 5.02 -449.20 -2.26 -32.67 16 13 C 0.54 23.75 7.73 86.72 0.67 24.42 16 14 O -0.60 -31.42 16.02 -3.97 -0.06 -31.48 16 15 C -0.17 -5.89 5.88 -20.06 -0.12 -6.01 16 16 C -0.04 -1.18 9.52 22.46 0.21 -0.97 16 17 C -0.14 -3.26 10.05 22.41 0.23 -3.04 16 18 C 0.12 2.95 7.04 22.82 0.16 3.11 16 19 C -0.19 -4.70 6.26 -19.54 -0.12 -4.82 16 20 C -0.02 -0.76 9.58 22.43 0.21 -0.55 16 21 C -0.10 -1.68 6.65 30.74 0.20 -1.47 16 22 C 0.07 1.02 4.25 31.17 0.13 1.15 16 23 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 24 C -0.15 -1.33 9.61 71.98 0.69 -0.64 16 25 O -0.31 -6.60 10.80 -93.60 -1.01 -7.61 16 26 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 3.90 6.07 -2.38 -0.01 3.88 16 29 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.40 14.62 6.58 -92.71 -0.61 14.01 16 31 H 0.15 3.43 6.40 -2.91 -0.02 3.41 16 32 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 33 H 0.13 4.05 7.66 -2.91 -0.02 4.03 16 34 H 0.10 1.48 7.91 -2.39 -0.02 1.46 16 35 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 0.66 8.12 -2.39 -0.02 0.64 16 37 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -70.77 319.70 3.13 -67.64 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.47 Total: 21.34 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 3.73 Total: -8.48 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -2.01 Total: -85.54 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -1.07 Total: -39.09 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -70.77 3.13 -67.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824688301.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.709 kcal (2) G-P(sol) polarization free energy of solvation -70.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds