Wall clock time and date at job start Mon Mar 30 2020 02:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08999 * 109.47093 * 2 1 4 4 C 1.50704 * 109.46784 * 119.99808 * 2 1 3 5 5 O 1.21287 * 119.99619 * 120.00434 * 4 2 1 6 6 N 1.34771 * 120.00184 * 299.99891 * 4 2 1 7 7 C 1.37095 * 120.00191 * 180.02562 * 6 4 2 8 8 H 1.08002 * 119.99896 * 222.93617 * 7 6 4 9 9 C 1.38955 * 119.99871 * 42.93052 * 7 6 4 10 10 N 1.31409 * 120.00028 * 18.94304 * 9 7 6 11 11 Si 1.86801 * 119.99802 * 198.94457 * 9 7 6 12 12 H 1.48499 * 109.47175 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47163 * 119.99974 * 11 9 7 14 14 H 1.48501 * 109.46693 * 240.00158 * 11 9 7 15 15 C 1.46502 * 119.99931 * 0.02562 * 6 4 2 16 16 C 1.53003 * 117.49705 * 187.59911 * 15 6 4 17 17 C 1.53002 * 60.00084 * 252.51133 * 16 15 6 18 18 C 1.50694 * 109.46929 * 239.99717 * 2 1 3 19 19 C 1.38291 * 119.97623 * 300.00092 * 18 2 1 20 20 C 1.38246 * 120.11144 * 179.97438 * 19 18 2 21 21 C 1.38161 * 120.05753 * 359.96882 * 20 19 18 22 22 C 1.38711 * 119.94532 * 0.02853 * 21 20 19 23 23 O 1.35899 * 120.05772 * 180.02562 * 22 21 20 24 24 C 1.38125 * 119.97198 * 119.97941 * 18 2 1 25 25 H 1.09001 * 109.46639 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47304 * 300.00038 * 1 2 3 27 27 H 1.08996 * 109.46670 * 60.00155 * 1 2 3 28 28 H 0.96998 * 120.00065 * 174.92072 * 10 9 7 29 29 H 1.08993 * 115.55287 * 333.30929 * 15 6 4 30 30 H 1.08995 * 117.49999 * 359.97438 * 16 15 6 31 31 H 1.09001 * 117.49903 * 145.02317 * 16 15 6 32 32 H 1.08996 * 117.50306 * 252.51477 * 17 16 15 33 33 H 1.08995 * 117.49837 * 107.48864 * 17 16 15 34 34 H 1.07998 * 119.93928 * 0.25643 * 19 18 2 35 35 H 1.08001 * 119.96752 * 180.02562 * 20 19 18 36 36 H 1.07997 * 120.02764 * 180.02562 * 21 20 19 37 37 H 0.96698 * 113.99685 * 89.99906 * 23 22 21 38 38 H 1.08005 * 120.02457 * 359.97438 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7297 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1641 -0.8959 3.5740 8 1 1.5012 -1.0619 4.4104 9 6 3.4805 -1.3371 3.6325 10 7 4.3791 -0.8334 2.8166 11 14 3.9726 -2.6462 4.8708 12 1 2.7846 -3.0458 5.6672 13 1 4.5088 -3.8302 4.1528 14 1 5.0156 -2.1027 5.7774 15 6 0.8641 0.9409 2.5890 16 6 0.6757 1.5182 3.9933 17 6 -0.4765 0.7802 3.3087 18 6 2.0324 -0.7104 -1.2304 19 6 1.6979 -2.0344 -1.4487 20 6 2.1567 -2.6888 -2.5768 21 6 2.9503 -2.0209 -3.4895 22 6 3.2872 -0.6928 -3.2729 23 8 4.0672 -0.0335 -4.1694 24 6 2.8261 -0.0386 -2.1395 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 5.3112 -1.0865 2.9059 29 1 0.9076 1.6439 1.7572 30 1 1.1784 1.0118 4.8172 31 1 0.5954 2.6014 4.0856 32 1 -1.3148 1.3776 2.9506 33 1 -0.7314 -0.2116 3.6822 34 1 1.0735 -2.5567 -0.7390 35 1 1.8938 -3.7227 -2.7451 36 1 3.3081 -2.5324 -4.3707 37 1 3.5710 0.4122 -4.8695 38 1 3.0864 0.9957 -1.9690 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826715705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:54 Heat of formation + Delta-G solvation = -9.816589 kcal Electronic energy + Delta-G solvation = -21695.342197 eV Core-core repulsion = 18504.609654 eV Total energy + Delta-G solvation = -3190.732542 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.73674 -38.61000 -36.74098 -35.81974 -33.47409 -32.54524 -30.82624 -29.83888 -28.61652 -25.16571 -23.95009 -22.23719 -21.78421 -21.54752 -20.77130 -19.25369 -17.57190 -16.41459 -16.10483 -16.03602 -15.26757 -14.90483 -14.65169 -14.28832 -13.84691 -13.71109 -13.27458 -13.03704 -12.74100 -12.25333 -12.16027 -11.76565 -11.66261 -11.34134 -11.06602 -11.05169 -10.87391 -10.83915 -10.78375 -10.38510 -10.16881 -10.11738 -9.84031 -9.67815 -8.72282 -8.47909 -8.13556 -7.89167 -6.98897 -6.08256 -3.82976 1.66639 1.72899 3.30827 3.40142 3.42957 3.99525 4.16178 4.27224 4.42978 4.77835 4.88831 5.13317 5.20511 5.32207 5.44641 5.56366 5.57604 5.69548 5.74149 5.79008 5.82499 5.94160 5.99225 6.17533 6.21376 6.25945 6.29459 6.39305 6.48905 6.58157 6.73161 6.76244 6.82819 6.94415 7.09221 7.19791 7.64209 7.88009 8.29192 9.08639 9.19561 9.69305 10.32921 11.00506 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017597 B = 0.006523 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.807628 B = 4291.563874 C = 5196.963869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 H 0.085 0.915 4 C 0.489 3.511 5 O -0.521 6.521 6 N -0.427 5.427 7 C -0.350 4.350 8 H 0.077 0.923 9 C 0.074 3.926 10 N -0.829 5.829 11 Si 0.910 3.090 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.286 1.286 15 C 0.077 3.923 16 C -0.178 4.178 17 C -0.208 4.208 18 C -0.026 4.026 19 C -0.087 4.087 20 C -0.110 4.110 21 C -0.155 4.155 22 C 0.092 3.908 23 O -0.501 6.501 24 C -0.139 4.139 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.263 0.737 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.382 0.618 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.118 3.702 -8.879 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 H 0.103 0.897 4 C 0.276 3.724 5 O -0.398 6.398 6 N -0.147 5.147 7 C -0.476 4.476 8 H 0.095 0.905 9 C -0.137 4.137 10 N -0.462 5.462 11 Si 0.737 3.263 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.213 1.213 15 C -0.030 4.030 16 C -0.215 4.215 17 C -0.247 4.247 18 C -0.027 4.027 19 C -0.105 4.105 20 C -0.128 4.128 21 C -0.173 4.173 22 C 0.049 3.951 23 O -0.310 6.310 24 C -0.158 4.158 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.236 0.764 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.071 2.899 -8.688 11.571 hybrid contribution 0.150 -0.240 0.360 0.458 sum -6.921 2.659 -8.328 11.151 Atomic orbital electron populations 1.21995 0.93287 1.02644 1.02392 1.20323 0.96690 0.99764 0.92807 0.89730 1.19491 0.83969 0.85873 0.83094 1.90557 1.37211 1.26997 1.84998 1.42730 1.45413 1.21672 1.04925 1.18858 0.94712 1.37710 0.96353 0.90490 1.25213 0.95566 0.96856 0.96088 1.69835 1.01378 1.39444 1.35575 0.86191 0.78327 0.81873 0.79897 1.19626 1.20711 1.21252 1.21724 0.93945 0.92059 0.95225 1.23117 1.01987 0.98420 0.98011 1.23330 0.92427 1.01978 1.06983 1.19343 0.95427 0.94086 0.93796 1.20964 0.99617 0.93878 0.96035 1.20934 0.98004 0.99474 0.94430 1.21242 1.00409 0.94701 1.00994 1.18338 0.94412 0.91213 0.91185 1.84857 1.34758 1.70407 1.40946 1.21242 0.98699 1.00588 0.95231 0.92412 0.90420 0.92906 0.92662 0.87807 0.87500 0.89897 0.89814 0.89040 0.85956 0.86114 0.86201 0.76398 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.63 37.16 0.32 -1.95 16 2 C -0.07 -1.42 2.11 -92.92 -0.20 -1.62 16 3 H 0.08 1.56 7.30 -51.93 -0.38 1.18 16 4 C 0.49 12.17 6.24 -10.99 -0.07 12.10 16 5 O -0.52 -15.18 12.77 5.55 0.07 -15.11 16 6 N -0.43 -10.46 2.85 -107.73 -0.31 -10.77 16 7 C -0.35 -9.46 7.83 -14.93 -0.12 -9.57 16 8 H 0.08 2.02 7.40 -52.49 -0.39 1.64 16 9 C 0.07 2.08 4.36 -17.47 -0.08 2.00 16 10 N -0.83 -24.88 11.67 55.50 0.65 -24.23 16 11 Si 0.91 22.14 29.60 -169.99 -5.03 17.10 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.08 1.49 4.31 -67.93 -0.29 1.20 16 16 C -0.18 -3.14 9.80 -26.73 -0.26 -3.41 16 17 C -0.21 -3.42 9.39 -26.73 -0.25 -3.67 16 18 C -0.03 -0.49 4.39 -104.65 -0.46 -0.95 16 19 C -0.09 -1.60 7.93 -39.56 -0.31 -1.91 16 20 C -0.11 -1.77 10.04 -39.61 -0.40 -2.17 16 21 C -0.15 -2.40 9.99 -39.43 -0.39 -2.79 16 22 C 0.09 1.51 6.70 -39.22 -0.26 1.25 16 23 O -0.50 -7.10 13.50 -19.42 -0.26 -7.36 16 24 C -0.14 -2.46 9.61 -39.43 -0.38 -2.83 16 25 H 0.06 0.91 7.38 -51.93 -0.38 0.53 16 26 H 0.08 1.17 4.37 -51.93 -0.23 0.94 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.26 7.62 8.32 -40.82 -0.34 7.28 16 29 H 0.10 1.80 6.24 -51.93 -0.32 1.48 16 30 H 0.11 2.12 6.82 -51.93 -0.35 1.77 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 34 H 0.12 2.30 7.51 -52.49 -0.39 1.90 16 35 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.38 3.21 9.06 45.56 0.41 3.63 16 38 H 0.12 2.01 7.94 -52.48 -0.42 1.59 16 LS Contribution 314.07 15.07 4.73 4.73 Total: -1.00 -34.30 314.07 -7.42 -41.73 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -4.13 Total: 8.24 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -3.15 Total: -14.34 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.34 Total: -34.99 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.19 Total: -22.47 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.30 -7.42 -41.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826715705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.909 kcal (2) G-P(sol) polarization free energy of solvation -34.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds