Wall clock time and date at job start Mon Mar 30 2020 02:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08999 * 109.47093 * 2 1 4 4 C 1.50704 * 109.46784 * 119.99808 * 2 1 3 5 5 O 1.21287 * 119.99619 * 120.00434 * 4 2 1 6 6 N 1.34771 * 120.00184 * 299.99891 * 4 2 1 7 7 C 1.37095 * 120.00191 * 180.02562 * 6 4 2 8 8 H 1.08002 * 119.99896 * 222.93617 * 7 6 4 9 9 C 1.38955 * 119.99871 * 42.93052 * 7 6 4 10 10 N 1.31409 * 120.00028 * 18.94304 * 9 7 6 11 11 Si 1.86801 * 119.99802 * 198.94457 * 9 7 6 12 12 H 1.48499 * 109.47175 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47163 * 119.99974 * 11 9 7 14 14 H 1.48501 * 109.46693 * 240.00158 * 11 9 7 15 15 C 1.46502 * 119.99931 * 0.02562 * 6 4 2 16 16 C 1.53003 * 117.49705 * 187.59911 * 15 6 4 17 17 C 1.53002 * 60.00084 * 252.51133 * 16 15 6 18 18 C 1.50694 * 109.46929 * 239.99717 * 2 1 3 19 19 C 1.38291 * 119.97623 * 300.00092 * 18 2 1 20 20 C 1.38246 * 120.11144 * 179.97438 * 19 18 2 21 21 C 1.38161 * 120.05753 * 359.96882 * 20 19 18 22 22 C 1.38711 * 119.94532 * 0.02853 * 21 20 19 23 23 O 1.35899 * 120.05772 * 180.02562 * 22 21 20 24 24 C 1.38125 * 119.97198 * 119.97941 * 18 2 1 25 25 H 1.09001 * 109.46639 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47304 * 300.00038 * 1 2 3 27 27 H 1.08996 * 109.46670 * 60.00155 * 1 2 3 28 28 H 0.96998 * 120.00065 * 174.92072 * 10 9 7 29 29 H 1.08993 * 115.55287 * 333.30929 * 15 6 4 30 30 H 1.08995 * 117.49999 * 359.97438 * 16 15 6 31 31 H 1.09001 * 117.49903 * 145.02317 * 16 15 6 32 32 H 1.08996 * 117.50306 * 252.51477 * 17 16 15 33 33 H 1.08995 * 117.49837 * 107.48864 * 17 16 15 34 34 H 1.07998 * 119.93928 * 0.25643 * 19 18 2 35 35 H 1.08001 * 119.96752 * 180.02562 * 20 19 18 36 36 H 1.07997 * 120.02764 * 180.02562 * 21 20 19 37 37 H 0.96698 * 113.99685 * 89.99906 * 23 22 21 38 38 H 1.08005 * 120.02457 * 359.97438 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7297 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1641 -0.8959 3.5740 8 1 1.5012 -1.0619 4.4104 9 6 3.4805 -1.3371 3.6325 10 7 4.3791 -0.8334 2.8166 11 14 3.9726 -2.6462 4.8708 12 1 2.7846 -3.0458 5.6672 13 1 4.5088 -3.8302 4.1528 14 1 5.0156 -2.1027 5.7774 15 6 0.8641 0.9409 2.5890 16 6 0.6757 1.5182 3.9933 17 6 -0.4765 0.7802 3.3087 18 6 2.0324 -0.7104 -1.2304 19 6 1.6979 -2.0344 -1.4487 20 6 2.1567 -2.6888 -2.5768 21 6 2.9503 -2.0209 -3.4895 22 6 3.2872 -0.6928 -3.2729 23 8 4.0672 -0.0335 -4.1694 24 6 2.8261 -0.0386 -2.1395 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 5.3112 -1.0865 2.9059 29 1 0.9076 1.6439 1.7572 30 1 1.1784 1.0118 4.8172 31 1 0.5954 2.6014 4.0856 32 1 -1.3148 1.3776 2.9506 33 1 -0.7314 -0.2116 3.6822 34 1 1.0735 -2.5567 -0.7390 35 1 1.8938 -3.7227 -2.7451 36 1 3.3081 -2.5324 -4.3707 37 1 3.5710 0.4122 -4.8695 38 1 3.0864 0.9957 -1.9690 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826715705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:53 Heat of formation + Delta-G solvation = -32.913153 kcal Electronic energy + Delta-G solvation = -21696.343739 eV Core-core repulsion = 18504.609654 eV Total energy + Delta-G solvation = -3191.734085 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.18989 -40.12701 -38.09379 -37.37562 -35.09680 -34.33245 -32.68700 -31.15768 -29.93950 -27.08825 -25.39863 -23.51901 -23.27971 -22.95150 -22.34584 -20.90003 -18.92788 -18.08672 -17.79924 -17.36956 -16.82592 -16.40958 -16.27920 -15.78062 -15.51652 -15.18360 -14.74877 -14.46903 -14.35768 -13.85781 -13.54654 -13.13588 -13.03401 -12.96735 -12.86086 -12.66811 -12.56374 -12.33383 -12.24468 -12.07549 -11.92060 -11.55751 -11.23969 -11.16746 -10.71739 -9.92149 -9.65988 -9.43312 -8.91746 -8.18565 -5.94784 0.38536 0.43040 1.33534 1.41164 1.48646 2.26907 2.44343 2.73531 3.11069 3.15199 3.33752 3.40929 3.77610 3.93737 4.12015 4.17126 4.23699 4.29203 4.36570 4.41049 4.48386 4.52317 4.66252 4.91367 4.92766 4.96911 5.06258 5.07355 5.13728 5.29932 5.35144 5.47117 5.49387 5.51917 5.52765 5.75599 5.97031 6.21781 6.91033 7.06249 7.25801 7.74756 8.42266 8.89730 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017597 B = 0.006523 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.807628 B = 4291.563874 C = 5196.963869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.064 4.064 3 H 0.091 0.909 4 C 0.476 3.524 5 O -0.576 6.576 6 N -0.443 5.443 7 C -0.351 4.351 8 H 0.078 0.922 9 C 0.021 3.979 10 N -0.870 5.870 11 Si 0.965 3.035 12 H -0.257 1.257 13 H -0.298 1.298 14 H -0.275 1.275 15 C 0.047 3.953 16 C -0.178 4.178 17 C -0.177 4.177 18 C -0.046 4.046 19 C -0.109 4.109 20 C -0.110 4.110 21 C -0.155 4.155 22 C 0.097 3.903 23 O -0.507 6.507 24 C -0.157 4.157 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.256 0.744 29 H 0.128 0.872 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.409 0.591 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.686 4.697 -9.900 14.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.085 4.085 3 H 0.109 0.891 4 C 0.265 3.735 5 O -0.457 6.457 6 N -0.164 5.164 7 C -0.479 4.479 8 H 0.095 0.905 9 C -0.185 4.185 10 N -0.506 5.506 11 Si 0.791 3.209 12 H -0.180 1.180 13 H -0.225 1.225 14 H -0.200 1.200 15 C -0.058 4.058 16 C -0.215 4.215 17 C -0.216 4.216 18 C -0.047 4.047 19 C -0.128 4.128 20 C -0.128 4.128 21 C -0.173 4.173 22 C 0.052 3.948 23 O -0.320 6.320 24 C -0.175 4.175 25 H 0.067 0.933 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.145 0.855 30 H 0.097 0.903 31 H 0.134 0.866 32 H 0.145 0.855 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.164 0.836 36 H 0.167 0.833 37 H 0.267 0.733 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.695 3.942 -9.693 13.605 hybrid contribution 0.583 -0.512 0.615 0.990 sum -8.112 3.430 -9.078 12.648 Atomic orbital electron populations 1.21946 0.90403 1.02687 1.04259 1.20229 0.99012 0.99046 0.90245 0.89108 1.20454 0.82905 0.85535 0.84651 1.90505 1.39552 1.29464 1.86139 1.42958 1.45822 1.23260 1.04339 1.19085 0.94445 1.37431 0.96944 0.90474 1.25995 0.95946 0.98589 0.97947 1.69957 1.01198 1.41417 1.37999 0.85324 0.78602 0.78878 0.78096 1.18026 1.22532 1.20027 1.22035 0.95321 0.91250 0.97170 1.23171 1.02282 1.00260 0.95831 1.23340 0.92294 1.01565 1.04378 1.19437 0.96553 0.94607 0.94095 1.20988 1.00709 0.94102 0.96970 1.21237 0.97394 1.00599 0.93541 1.21563 0.99632 0.94463 1.01636 1.18433 0.93539 0.91674 0.91114 1.84786 1.35187 1.70560 1.41475 1.21397 0.99087 1.01149 0.95887 0.93300 0.89652 0.89763 0.93477 0.85494 0.90347 0.86569 0.85472 0.90732 0.87510 0.83624 0.83314 0.73265 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 8.63 71.99 0.62 -3.38 16 2 C -0.06 -2.44 2.11 -12.28 -0.03 -2.47 16 3 H 0.09 3.30 7.30 -2.39 -0.02 3.28 16 4 C 0.48 24.23 6.24 87.66 0.55 24.78 16 5 O -0.58 -34.98 12.77 -3.05 -0.04 -35.02 16 6 N -0.44 -21.99 2.85 -613.13 -1.75 -23.74 16 7 C -0.35 -19.42 7.83 84.04 0.66 -18.76 16 8 H 0.08 4.13 7.40 -2.91 -0.02 4.11 16 9 C 0.02 1.23 4.36 84.93 0.37 1.60 16 10 N -0.87 -54.26 11.67 21.66 0.25 -54.01 16 11 Si 0.97 46.78 29.60 68.60 2.03 48.81 16 12 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 13 H -0.30 -15.16 7.11 99.48 0.71 -14.46 16 14 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 15 C 0.05 1.76 4.31 44.99 0.19 1.95 16 16 C -0.18 -5.95 9.80 30.60 0.30 -5.65 16 17 C -0.18 -5.33 9.39 30.60 0.29 -5.04 16 18 C -0.05 -1.76 4.39 -19.88 -0.09 -1.85 16 19 C -0.11 -4.08 7.93 22.28 0.18 -3.90 16 20 C -0.11 -3.42 10.04 22.25 0.22 -3.20 16 21 C -0.15 -4.48 9.99 22.36 0.22 -4.25 16 22 C 0.10 3.00 6.70 22.51 0.15 3.15 16 23 O -0.51 -13.16 13.50 -92.41 -1.25 -14.41 16 24 C -0.16 -5.44 9.61 22.37 0.21 -5.22 16 25 H 0.05 1.51 7.38 -2.39 -0.02 1.50 16 26 H 0.08 2.35 4.37 -2.39 -0.01 2.34 16 27 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.26 15.52 8.32 -92.71 -0.77 14.75 16 29 H 0.13 4.10 6.24 -2.39 -0.01 4.08 16 30 H 0.08 3.09 6.82 -2.39 -0.02 3.08 16 31 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.11 4.19 7.51 -2.91 -0.02 4.17 16 35 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 37 H 0.41 5.68 9.06 -74.06 -0.67 5.01 16 38 H 0.13 4.14 7.94 -2.91 -0.02 4.12 16 Total: -1.00 -77.72 314.07 3.51 -74.21 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.41 Total: 26.40 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 3.85 Total: -22.24 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -1.50 Total: -77.74 kcal Atomic # 8 Polarization: -48.15 SS G_CDS: -1.29 Total: -49.43 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -77.72 3.51 -74.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826715705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.297 kcal (2) G-P(sol) polarization free energy of solvation -77.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds