Wall clock time and date at job start Mon Mar 30 2020 02:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 110.79853 * 2 1 4 4 C 1.54697 * 110.74531 * 236.69603 * 2 1 3 5 5 C 1.51672 * 101.89002 * 267.04518 * 4 2 1 6 6 C 1.37318 * 132.06227 * 164.58398 * 5 4 2 7 7 C 1.39806 * 119.85362 * 180.74441 * 6 5 4 8 8 C 1.47601 * 120.26513 * 179.67140 * 7 6 5 9 9 O 1.21583 * 120.00202 * 359.73052 * 8 7 6 10 10 N 1.34777 * 120.00220 * 179.72633 * 8 7 6 11 11 C 1.46500 * 120.00376 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47473 * 180.02562 * 11 10 8 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.39753 * 119.47125 * 359.40354 * 7 6 5 22 22 C 1.37468 * 120.19898 * 0.11987 * 21 7 6 23 23 C 1.39180 * 107.00038 * 344.47308 * 5 4 2 24 24 O 1.35995 * 111.17839 * 359.09075 * 23 5 4 25 25 H 1.09001 * 109.47367 * 298.16009 * 1 2 3 26 26 H 1.09004 * 109.46750 * 58.15940 * 1 2 3 27 27 H 1.09000 * 109.47032 * 178.15619 * 1 2 3 28 28 H 1.09000 * 110.94165 * 25.19112 * 4 2 1 29 29 H 1.08991 * 110.94566 * 148.88994 * 4 2 1 30 30 H 1.07999 * 120.07442 * 0.48764 * 6 5 4 31 31 H 0.97004 * 120.00228 * 0.02562 * 10 8 7 32 32 H 1.09002 * 109.47129 * 59.99747 * 11 10 8 33 33 H 1.08998 * 109.46845 * 300.00553 * 11 10 8 34 34 H 1.09002 * 109.47153 * 59.99757 * 12 11 10 35 35 H 1.09001 * 109.46832 * 299.99948 * 12 11 10 36 36 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 37 37 H 1.07998 * 119.89887 * 180.09836 * 21 7 6 38 38 H 1.08001 * 119.78715 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0780 -0.7943 -1.2091 5 6 2.2602 -2.1787 -0.6168 6 6 2.4486 -3.4095 -1.1958 7 6 2.5746 -4.5455 -0.3906 8 6 2.7700 -5.8739 -1.0036 9 8 2.8171 -5.9841 -2.2135 10 7 2.8964 -6.9647 -0.2222 11 6 3.0910 -8.2831 -0.8305 12 6 3.2037 -9.3407 0.2693 13 6 3.4032 -10.6970 -0.3566 14 1 3.4458 -10.7948 -1.4313 15 6 3.5324 -11.8129 0.4429 16 7 3.4810 -11.6937 1.7516 17 14 3.7804 -13.4940 -0.3329 18 1 5.2331 -13.7521 -0.5011 19 1 3.1908 -14.5363 0.5453 20 1 3.1144 -13.5300 -1.6597 21 6 2.5197 -4.4124 0.9995 22 6 2.3406 -3.1742 1.5691 23 6 2.2101 -2.0391 0.7670 24 8 2.0391 -0.7379 1.1237 25 1 -0.3634 0.4850 0.9060 26 1 -0.3633 0.5422 -0.8731 27 1 -0.3633 -1.0271 -0.0331 28 1 1.3545 -0.8114 -2.0242 29 1 3.0310 -0.3854 -1.5444 30 1 2.4951 -3.5004 -2.2710 31 1 2.8586 -6.8768 0.7431 32 1 4.0046 -8.2777 -1.4250 33 1 2.2414 -8.5159 -1.4724 34 1 2.2898 -9.3460 0.8633 35 1 4.0531 -9.1080 0.9114 36 1 3.5715 -12.4789 2.3140 37 1 2.6178 -5.2851 1.6281 38 1 2.2996 -3.0789 2.6441 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832022590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:17 Heat of formation + Delta-G solvation = -57.837378 kcal Electronic energy + Delta-G solvation = -20042.597069 eV Core-core repulsion = 16849.782189 eV Total energy + Delta-G solvation = -3192.814880 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.51079 -39.45562 -37.14861 -34.91451 -33.47905 -32.88052 -31.27807 -30.55677 -29.36240 -27.09910 -25.08752 -23.37602 -22.27583 -21.87062 -21.01014 -20.07333 -17.68091 -17.32106 -16.60543 -16.43145 -16.12367 -15.21710 -14.88516 -14.52846 -14.41013 -14.21214 -13.78507 -13.57568 -13.30755 -13.13898 -12.75936 -12.71526 -12.52508 -12.35682 -12.27696 -11.55305 -11.21030 -11.11543 -11.02040 -10.93342 -10.64235 -10.33461 -9.86419 -9.50112 -9.22849 -9.11748 -8.60629 -8.42326 -8.23650 -6.09598 -4.12347 0.78988 1.15412 2.83076 3.05359 3.29686 3.35722 3.39600 3.61975 3.85156 4.07089 4.26982 4.42174 4.48858 4.62557 4.76711 4.88723 4.98218 5.08461 5.19094 5.25072 5.27597 5.38135 5.47831 5.50417 5.72031 5.82000 6.01623 6.14348 6.20017 6.30454 6.34649 6.39772 6.73219 6.88140 6.92836 7.51214 7.61064 7.88589 7.99302 8.27385 8.62007 8.93571 9.52500 11.02068 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.047352 B = 0.002865 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.175612 B = 9769.183068 C =10168.385765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.076 3.924 3 H 0.116 0.884 4 C -0.104 4.104 5 C -0.186 4.186 6 C -0.012 4.012 7 C -0.156 4.156 8 C 0.553 3.447 9 O -0.550 6.550 10 N -0.716 5.716 11 C 0.121 3.879 12 C 0.012 3.988 13 C -0.521 4.521 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.050 4.050 22 C -0.145 4.145 23 C 0.126 3.874 24 O -0.299 6.299 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.138 0.862 31 H 0.397 0.603 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.262 0.738 37 H 0.139 0.861 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.551 24.124 -0.820 24.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.020 3.980 3 H 0.134 0.866 4 C -0.141 4.141 5 C -0.187 4.187 6 C -0.031 4.031 7 C -0.159 4.159 8 C 0.339 3.661 9 O -0.430 6.430 10 N -0.366 5.366 11 C -0.001 4.001 12 C -0.026 4.026 13 C -0.560 4.560 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.069 4.069 22 C -0.164 4.164 23 C 0.080 3.920 24 O -0.212 6.212 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.155 0.845 31 H 0.231 0.769 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.157 0.843 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.474 24.015 -1.313 24.463 hybrid contribution 0.118 -0.926 0.093 0.938 sum -4.356 23.089 -1.220 23.528 Atomic orbital electron populations 1.22259 0.94049 1.03489 1.03177 1.23462 0.94863 0.96357 0.83300 0.86581 1.21856 1.02823 0.91056 0.98415 1.20646 1.08863 0.95358 0.93817 1.20344 0.93052 0.89071 1.00649 1.19947 1.08305 0.94111 0.93574 1.18082 0.77221 0.83985 0.86773 1.90743 1.51618 1.86614 1.13989 1.46260 1.72146 1.08082 1.10131 1.21761 1.00509 0.79827 0.97961 1.19335 0.97825 0.92223 0.93175 1.21048 1.50218 0.91436 0.93317 0.92217 1.24996 0.95062 0.99413 0.94824 1.69952 1.50056 1.30037 1.03264 0.86507 0.78398 0.83391 0.79233 1.20554 1.21167 1.19727 1.21119 0.94870 0.96986 0.93879 1.20173 1.07134 0.89057 1.00027 1.19813 0.94475 0.84918 0.92811 1.86849 1.79571 1.16602 1.38213 0.91254 0.90542 0.91661 0.88768 0.88980 0.84452 0.76870 0.92376 0.92379 0.95883 0.95889 0.92833 0.84329 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 9.49 37.16 0.35 -0.75 16 2 C 0.08 0.56 4.31 -25.84 -0.11 0.45 16 3 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.10 -0.82 6.65 -26.51 -0.18 -1.00 16 5 C -0.19 -2.11 6.25 -104.13 -0.65 -2.76 16 6 C -0.01 -0.16 9.58 -39.33 -0.38 -0.54 16 7 C -0.16 -2.25 5.88 -104.92 -0.62 -2.87 16 8 C 0.55 9.89 7.77 -12.44 -0.10 9.80 16 9 O -0.55 -11.67 16.36 5.29 0.09 -11.58 16 10 N -0.72 -12.82 5.51 -61.33 -0.34 -13.16 16 11 C 0.12 2.60 5.61 -4.04 -0.02 2.58 16 12 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 13 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 17 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.05 -0.60 9.52 -39.30 -0.37 -0.97 16 22 C -0.15 -1.63 10.05 -39.36 -0.40 -2.03 16 23 C 0.13 1.46 6.95 -38.73 -0.27 1.19 16 24 O -0.30 -3.21 10.81 -19.72 -0.21 -3.43 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 28 H 0.09 0.61 7.92 -51.93 -0.41 0.20 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.14 1.80 7.66 -52.49 -0.40 1.40 16 31 H 0.40 6.08 6.51 -40.82 -0.27 5.82 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.14 1.43 6.40 -52.49 -0.34 1.09 16 38 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 324.40 15.07 4.89 4.89 Total: -1.00 -32.53 324.40 -8.33 -40.87 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.18 Total: 1.36 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -3.29 Total: -9.97 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.40 Total: -38.51 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.13 Total: -15.01 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.53 -8.33 -40.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832022590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.969 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds