Wall clock time and date at job start Mon Mar 30 2020 02:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 110.79853 * 2 1 4 4 C 1.54697 * 110.74531 * 236.69603 * 2 1 3 5 5 C 1.51672 * 101.89002 * 267.04518 * 4 2 1 6 6 C 1.37318 * 132.06227 * 164.58398 * 5 4 2 7 7 C 1.39806 * 119.85362 * 180.74441 * 6 5 4 8 8 C 1.47601 * 120.26513 * 179.67140 * 7 6 5 9 9 O 1.21583 * 120.00202 * 359.73052 * 8 7 6 10 10 N 1.34777 * 120.00220 * 179.72633 * 8 7 6 11 11 C 1.46500 * 120.00376 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47473 * 180.02562 * 11 10 8 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.39753 * 119.47125 * 359.40354 * 7 6 5 22 22 C 1.37468 * 120.19898 * 0.11987 * 21 7 6 23 23 C 1.39180 * 107.00038 * 344.47308 * 5 4 2 24 24 O 1.35995 * 111.17839 * 359.09075 * 23 5 4 25 25 H 1.09001 * 109.47367 * 298.16009 * 1 2 3 26 26 H 1.09004 * 109.46750 * 58.15940 * 1 2 3 27 27 H 1.09000 * 109.47032 * 178.15619 * 1 2 3 28 28 H 1.09000 * 110.94165 * 25.19112 * 4 2 1 29 29 H 1.08991 * 110.94566 * 148.88994 * 4 2 1 30 30 H 1.07999 * 120.07442 * 0.48764 * 6 5 4 31 31 H 0.97004 * 120.00228 * 0.02562 * 10 8 7 32 32 H 1.09002 * 109.47129 * 59.99747 * 11 10 8 33 33 H 1.08998 * 109.46845 * 300.00553 * 11 10 8 34 34 H 1.09002 * 109.47153 * 59.99757 * 12 11 10 35 35 H 1.09001 * 109.46832 * 299.99948 * 12 11 10 36 36 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 37 37 H 1.07998 * 119.89887 * 180.09836 * 21 7 6 38 38 H 1.08001 * 119.78715 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0780 -0.7943 -1.2091 5 6 2.2602 -2.1787 -0.6168 6 6 2.4486 -3.4095 -1.1958 7 6 2.5746 -4.5455 -0.3906 8 6 2.7700 -5.8739 -1.0036 9 8 2.8171 -5.9841 -2.2135 10 7 2.8964 -6.9647 -0.2222 11 6 3.0910 -8.2831 -0.8305 12 6 3.2037 -9.3407 0.2693 13 6 3.4032 -10.6970 -0.3566 14 1 3.4458 -10.7948 -1.4313 15 6 3.5324 -11.8129 0.4429 16 7 3.4810 -11.6937 1.7516 17 14 3.7804 -13.4940 -0.3329 18 1 5.2331 -13.7521 -0.5011 19 1 3.1908 -14.5363 0.5453 20 1 3.1144 -13.5300 -1.6597 21 6 2.5197 -4.4124 0.9995 22 6 2.3406 -3.1742 1.5691 23 6 2.2101 -2.0391 0.7670 24 8 2.0391 -0.7379 1.1237 25 1 -0.3634 0.4850 0.9060 26 1 -0.3633 0.5422 -0.8731 27 1 -0.3633 -1.0271 -0.0331 28 1 1.3545 -0.8114 -2.0242 29 1 3.0310 -0.3854 -1.5444 30 1 2.4951 -3.5004 -2.2710 31 1 2.8586 -6.8768 0.7431 32 1 4.0046 -8.2777 -1.4250 33 1 2.2414 -8.5159 -1.4724 34 1 2.2898 -9.3460 0.8633 35 1 4.0531 -9.1080 0.9114 36 1 3.5715 -12.4789 2.3140 37 1 2.6178 -5.2851 1.6281 38 1 2.2996 -3.0789 2.6441 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832022590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:17 Heat of formation + Delta-G solvation = -78.331483 kcal Electronic energy + Delta-G solvation = -20043.485760 eV Core-core repulsion = 16849.782189 eV Total energy + Delta-G solvation = -3193.703571 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.33519 -40.81003 -38.18824 -36.64700 -34.88192 -34.17252 -32.38274 -31.58892 -30.90986 -27.88168 -26.83219 -24.69762 -23.16828 -22.82618 -22.56757 -21.39462 -18.87581 -18.47803 -18.17212 -17.48834 -17.08423 -16.57156 -16.47184 -16.41443 -15.38096 -15.20602 -14.91758 -14.69565 -14.55876 -14.29776 -14.15156 -13.63639 -13.57847 -13.21999 -13.21446 -13.01075 -12.92854 -12.53739 -12.25978 -12.15785 -11.85194 -11.78606 -11.68402 -11.47519 -10.99793 -10.60642 -10.11289 -10.02190 -9.23947 -8.24134 -6.34459 -0.24279 0.23540 1.42208 1.42608 1.54102 1.73728 2.14908 2.23275 2.44414 2.74062 3.10750 3.38705 3.53853 3.70942 3.83207 3.94875 4.08697 4.14768 4.27549 4.43652 4.48199 4.50411 4.64598 4.77299 4.81094 4.83952 4.90104 5.04054 5.09391 5.21575 5.23381 5.24576 5.27334 5.42446 5.49079 5.57573 5.78183 6.07921 6.15721 6.56773 6.78486 7.18844 7.34768 8.87803 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.047352 B = 0.002865 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.175612 B = 9769.183068 C =10168.385765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 H 0.146 0.854 4 C -0.103 4.103 5 C -0.189 4.189 6 C -0.021 4.021 7 C -0.178 4.178 8 C 0.554 3.446 9 O -0.589 6.589 10 N -0.712 5.712 11 C 0.140 3.860 12 C 0.022 3.978 13 C -0.547 4.547 14 H 0.059 0.941 15 C 0.007 3.993 16 N -0.926 5.926 17 Si 0.965 3.035 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.267 1.267 21 C -0.045 4.045 22 C -0.148 4.148 23 C 0.126 3.874 24 O -0.309 6.309 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.045 0.955 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.131 0.869 31 H 0.409 0.591 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.010 0.990 35 H 0.010 0.990 36 H 0.266 0.734 37 H 0.153 0.847 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.805 25.667 -0.671 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.017 3.983 3 H 0.163 0.837 4 C -0.140 4.140 5 C -0.190 4.190 6 C -0.040 4.040 7 C -0.182 4.182 8 C 0.344 3.656 9 O -0.472 6.472 10 N -0.362 5.362 11 C 0.017 3.983 12 C -0.015 4.015 13 C -0.586 4.586 14 H 0.077 0.923 15 C -0.192 4.192 16 N -0.566 5.566 17 Si 0.790 3.210 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.191 1.191 21 C -0.064 4.064 22 C -0.166 4.166 23 C 0.080 3.920 24 O -0.222 6.222 25 H 0.091 0.909 26 H 0.117 0.883 27 H 0.064 0.936 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.149 0.851 31 H 0.247 0.753 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.028 0.972 36 H 0.075 0.925 37 H 0.171 0.829 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.734 25.586 -1.143 26.045 hybrid contribution 0.168 -1.253 0.084 1.267 sum -4.566 24.333 -1.059 24.780 Atomic orbital electron populations 1.22275 0.93349 1.02673 1.04487 1.23814 0.95489 0.97163 0.81840 0.83673 1.22004 1.04105 0.88843 0.99047 1.20936 1.07663 0.96115 0.94249 1.20351 0.93642 0.89641 1.00366 1.19690 1.11407 0.92361 0.94714 1.18579 0.75850 0.84964 0.86251 1.90710 1.53448 1.87303 1.15709 1.46049 1.72344 1.06972 1.10874 1.21280 0.99634 0.80819 0.96596 1.19143 0.96456 0.92413 0.93491 1.21463 1.50486 0.93026 0.93585 0.92292 1.25866 0.94579 1.03390 0.95315 1.70053 1.50667 1.31315 1.04523 0.85443 0.78601 0.78506 0.78490 1.19762 1.20477 1.19097 1.21239 0.94159 0.98087 0.92906 1.20420 1.06411 0.88582 1.01223 1.20055 0.93409 0.85569 0.93012 1.86850 1.79498 1.16083 1.39817 0.90879 0.88288 0.93557 0.87211 0.87613 0.85092 0.75344 0.93323 0.93329 0.97137 0.97159 0.92510 0.82919 0.82600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 9.49 71.98 0.68 -1.06 16 2 C 0.07 0.85 4.31 31.17 0.13 0.98 16 3 H 0.15 0.90 8.14 -2.38 -0.02 0.88 16 4 C -0.10 -1.37 6.65 30.74 0.20 -1.16 16 5 C -0.19 -4.02 6.25 -19.54 -0.12 -4.15 16 6 C -0.02 -0.55 9.58 22.43 0.21 -0.34 16 7 C -0.18 -5.16 5.88 -20.06 -0.12 -5.28 16 8 C 0.55 20.29 7.77 86.71 0.67 20.97 16 9 O -0.59 -25.80 16.36 -3.98 -0.07 -25.87 16 10 N -0.71 -25.94 5.51 -466.21 -2.57 -28.51 16 11 C 0.14 6.17 5.61 86.38 0.48 6.65 16 12 C 0.02 1.14 5.09 29.85 0.15 1.29 16 13 C -0.55 -30.74 9.11 25.60 0.23 -30.51 16 14 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 15 C 0.01 0.41 5.46 84.66 0.46 0.87 16 16 N -0.93 -54.33 13.29 21.45 0.28 -54.04 16 17 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 C -0.05 -1.06 9.52 22.45 0.21 -0.84 16 22 C -0.15 -3.08 10.05 22.42 0.23 -2.86 16 23 C 0.13 2.71 6.95 22.82 0.16 2.87 16 24 O -0.31 -5.89 10.81 -93.49 -1.01 -6.90 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.05 0.66 8.12 -2.39 -0.02 0.64 16 28 H 0.11 1.13 7.92 -2.39 -0.02 1.11 16 29 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.13 3.52 7.66 -2.91 -0.02 3.50 16 31 H 0.41 12.65 6.51 -92.71 -0.60 12.04 16 32 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.15 2.99 6.40 -2.91 -0.02 2.97 16 38 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -70.18 324.40 2.73 -67.44 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.47 Total: 14.65 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 3.60 Total: -12.55 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -2.28 Total: -82.55 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -1.08 Total: -32.77 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -70.18 2.73 -67.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832022590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.888 kcal (2) G-P(sol) polarization free energy of solvation -70.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds