Wall clock time and date at job start Mon Mar 30 2020 02:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 112.96934 * 2 1 4 4 C 1.53952 * 113.76477 * 131.67355 * 2 1 3 5 5 C 1.53951 * 86.28900 * 137.91112 * 4 2 1 6 6 N 1.47577 * 113.77275 * 228.31244 * 2 1 3 7 7 C 1.34780 * 134.48849 * 41.07755 * 6 2 1 8 8 O 1.21283 * 119.99761 * 359.97438 * 7 6 2 9 9 C 1.50691 * 120.00197 * 179.97438 * 7 6 2 10 10 C 1.50695 * 109.47548 * 180.02562 * 9 7 6 11 11 C 1.38310 * 119.92779 * 269.72882 * 10 9 7 12 12 C 1.38105 * 120.06689 * 179.72290 * 11 10 9 13 13 C 1.38882 * 119.92818 * 0.56844 * 12 11 10 14 14 O 1.35757 * 120.06512 * 179.68345 * 13 12 11 15 15 C 1.34832 * 116.99523 * 174.48590 * 14 13 12 16 16 H 1.07995 * 120.00050 * 5.06382 * 15 14 13 17 17 C 1.38653 * 119.99592 * 185.05560 * 15 14 13 18 18 N 1.31558 * 119.99998 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00031 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47291 * 89.99843 * 19 17 15 21 21 H 1.48508 * 109.47242 * 209.99786 * 19 17 15 22 22 H 1.48497 * 109.47207 * 329.99612 * 19 17 15 23 23 C 1.38874 * 119.86210 * 359.70186 * 13 12 11 24 24 C 1.38096 * 119.93435 * 0.02562 * 23 13 12 25 25 H 1.09004 * 109.47172 * 309.67437 * 1 2 3 26 26 H 1.08999 * 109.47816 * 189.66848 * 1 2 3 27 27 H 1.09011 * 109.46750 * 69.66945 * 1 2 3 28 28 H 1.09000 * 113.74285 * 252.25299 * 4 2 1 29 29 H 1.08998 * 113.74170 * 23.56756 * 4 2 1 30 30 H 1.08999 * 113.76788 * 90.69313 * 5 4 2 31 31 H 1.08996 * 113.76755 * 221.98075 * 5 4 2 32 32 H 1.09003 * 109.47129 * 299.99697 * 9 7 6 33 33 H 1.08998 * 109.47318 * 59.99801 * 9 7 6 34 34 H 1.07997 * 119.96668 * 359.97280 * 11 10 9 35 35 H 1.07997 * 120.03217 * 180.27159 * 12 11 10 36 36 H 0.96996 * 120.00081 * 180.02562 * 18 17 15 37 37 H 1.08009 * 120.03316 * 180.02562 * 23 13 12 38 38 H 1.07998 * 119.96632 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9553 1.0036 0.0000 4 6 2.1504 -0.9368 1.0524 5 6 3.1536 -1.3399 -0.0435 6 7 2.1249 -0.8982 -1.0086 7 6 1.8423 -1.1956 -2.2924 8 8 0.9050 -0.6612 -2.8465 9 6 2.6908 -2.1919 -3.0394 10 6 2.1682 -2.3432 -4.4448 11 6 1.2124 -3.3025 -4.7260 12 6 0.7273 -3.4398 -6.0117 13 6 1.2089 -2.6213 -7.0251 14 8 0.7387 -2.7582 -8.2913 15 6 1.1625 -1.8590 -9.2021 16 1 1.9075 -1.1257 -8.9309 17 6 0.6419 -1.8759 -10.4871 18 7 1.0558 -0.9988 -11.3761 19 14 -0.6471 -3.1439 -10.9561 20 1 -2.0007 -2.5985 -10.6818 21 1 -0.5252 -3.4625 -12.4014 22 1 -0.4399 -4.3789 -10.1579 23 6 2.1728 -1.6629 -6.7406 24 6 2.6497 -1.5267 -5.4518 25 1 -0.3634 0.6561 0.7910 26 1 -0.3635 -1.0130 0.1726 27 1 -0.3633 0.3571 -0.9638 28 1 2.6056 -0.4126 1.8927 29 1 1.4902 -1.7469 1.3625 30 1 4.0572 -0.7304 -0.0576 31 1 3.3614 -2.4093 -0.0771 32 1 3.7217 -1.8394 -3.0716 33 1 2.6521 -3.1555 -2.5313 34 1 0.8420 -3.9421 -3.9385 35 1 -0.0223 -4.1861 -6.2298 36 1 0.6913 -1.0104 -12.2749 37 1 2.5490 -1.0246 -7.5265 38 1 3.3990 -0.7812 -5.2299 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881480086.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:16 Heat of formation + Delta-G solvation = -26.491712 kcal Electronic energy + Delta-G solvation = -20389.354484 eV Core-core repulsion = 17197.898854 eV Total energy + Delta-G solvation = -3191.455630 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.36638 -40.78729 -39.07656 -38.01612 -34.54041 -33.24345 -31.85556 -31.50480 -30.18465 -28.22254 -26.70427 -24.35048 -23.74510 -23.14688 -21.84427 -19.85179 -19.63880 -19.11548 -17.92811 -17.04944 -16.85570 -16.45515 -16.19983 -15.73398 -15.65586 -15.24034 -15.13404 -14.59259 -14.37917 -14.26588 -14.19926 -14.08281 -13.29960 -13.09073 -12.93099 -12.84116 -12.65682 -12.51309 -12.42541 -12.37548 -12.24960 -11.94385 -11.53437 -11.31011 -10.93926 -10.60511 -9.82360 -9.62428 -9.00568 -8.52243 -6.25080 0.55101 0.58284 1.28851 1.33917 1.50311 1.72338 1.95333 2.26680 2.74420 3.00987 3.14927 3.53513 3.75317 3.89964 3.98970 4.09793 4.13513 4.19873 4.29113 4.42506 4.53839 4.54786 4.58656 4.66401 4.76882 4.78226 4.92017 4.94514 5.04650 5.12420 5.22258 5.26189 5.35152 5.45234 5.53947 5.70847 5.76861 5.88618 6.21939 6.81565 6.81843 7.29141 7.55953 8.59744 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.039038 B = 0.003353 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.078181 B = 8349.549971 C = 8389.131015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.114 3.886 3 H 0.097 0.903 4 C -0.131 4.131 5 C 0.099 3.901 6 N -0.656 5.656 7 C 0.525 3.475 8 O -0.585 6.585 9 C -0.072 4.072 10 C -0.138 4.138 11 C -0.060 4.060 12 C -0.192 4.192 13 C 0.119 3.881 14 O -0.245 6.245 15 C -0.402 4.402 16 H 0.078 0.922 17 C 0.009 3.991 18 N -0.924 5.924 19 Si 0.973 3.027 20 H -0.268 1.268 21 H -0.263 1.263 22 H -0.262 1.262 23 C -0.238 4.238 24 C -0.066 4.066 25 H 0.088 0.912 26 H 0.054 0.946 27 H 0.032 0.968 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.152 0.848 35 H 0.130 0.870 36 H 0.285 0.715 37 H 0.107 0.893 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.459 -3.297 28.835 29.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.012 3.988 3 H 0.115 0.885 4 C -0.168 4.168 5 C -0.022 4.022 6 N -0.393 5.393 7 C 0.316 3.684 8 O -0.465 6.465 9 C -0.111 4.111 10 C -0.139 4.139 11 C -0.078 4.078 12 C -0.211 4.211 13 C 0.070 3.930 14 O -0.152 6.152 15 C -0.478 4.478 16 H 0.096 0.904 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.795 3.205 20 H -0.193 1.193 21 H -0.188 1.188 22 H -0.186 1.186 23 C -0.257 4.257 24 C -0.084 4.084 25 H 0.107 0.893 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.131 0.869 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.169 0.831 35 H 0.148 0.852 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.775 -3.150 28.035 28.612 hybrid contribution -0.448 0.364 -1.244 1.372 sum 4.327 -2.785 26.790 27.280 Atomic orbital electron populations 1.21886 0.95073 1.02442 1.01739 1.23070 0.94668 0.95822 0.85282 0.88544 1.23571 0.97730 0.99048 0.96477 1.23534 0.92492 1.02805 0.83366 1.50604 1.34007 1.44852 1.09837 1.20893 0.84639 0.82816 0.80063 1.90730 1.32757 1.55244 1.67755 1.20457 0.99780 1.00269 0.90634 1.19313 1.00918 0.98817 0.94836 1.20925 0.94644 0.97402 0.94783 1.20506 1.05218 1.03343 0.92054 1.19655 0.93432 0.95178 0.84737 1.83510 1.65179 1.50727 1.15827 1.20717 1.24052 1.11578 0.91464 0.90430 1.25311 0.99994 0.99483 0.94106 1.69731 1.44754 1.36524 1.05498 0.85190 0.78325 0.79121 0.77882 1.19271 1.18791 1.18580 1.21244 1.02734 1.03093 0.98620 1.20881 0.98651 0.97587 0.91285 0.89325 0.92643 0.94879 0.86914 0.88633 0.87799 0.87907 0.86260 0.85373 0.83062 0.85211 0.90504 0.87508 0.85197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.57 71.98 0.69 -2.16 16 2 C 0.11 1.71 4.88 45.09 0.22 1.93 16 3 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 4 C -0.13 -0.83 7.85 31.25 0.25 -0.59 16 5 C 0.10 0.74 8.62 86.44 0.75 1.49 16 6 N -0.66 -12.22 3.50 -810.73 -2.84 -15.05 16 7 C 0.52 14.35 7.95 87.65 0.70 15.05 16 8 O -0.59 -22.96 15.61 -3.04 -0.05 -23.01 16 9 C -0.07 -1.61 5.58 29.10 0.16 -1.44 16 10 C -0.14 -4.57 4.38 -19.83 -0.09 -4.65 16 11 C -0.06 -2.04 9.69 22.26 0.22 -1.82 16 12 C -0.19 -8.06 9.99 22.39 0.22 -7.83 16 13 C 0.12 6.04 6.65 22.58 0.15 6.19 16 14 O -0.24 -14.15 8.59 -22.83 -0.20 -14.35 16 15 C -0.40 -25.02 9.95 67.92 0.68 -24.34 16 16 H 0.08 5.08 5.44 -2.91 -0.02 5.06 16 17 C 0.01 0.56 5.49 84.83 0.47 1.02 16 18 N -0.92 -57.28 13.96 21.61 0.30 -56.98 16 19 Si 0.97 47.36 28.62 68.60 1.96 49.32 16 20 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 23 C -0.24 -11.48 9.17 22.39 0.21 -11.28 16 24 C -0.07 -2.56 9.69 22.25 0.22 -2.34 16 25 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 1.03 7.98 -2.39 -0.02 1.01 16 27 H 0.03 0.88 7.31 -2.38 -0.02 0.87 16 28 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.10 0.61 7.99 -2.39 -0.02 0.59 16 30 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.12 2.04 8.08 -2.39 -0.02 2.03 16 33 H 0.13 1.96 8.08 -2.39 -0.02 1.94 16 34 H 0.15 3.93 8.06 -2.91 -0.02 3.90 16 35 H 0.13 4.98 8.06 -2.91 -0.02 4.96 16 36 H 0.29 16.14 8.31 -92.71 -0.77 15.37 16 37 H 0.11 5.61 5.64 -2.91 -0.02 5.60 16 38 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -81.93 324.77 5.06 -76.86 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 1.06 Total: 14.00 kcal Atomic # 6 Polarization: -35.61 SS G_CDS: 4.82 Total: -30.78 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -2.54 Total: -72.03 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.24 Total: -37.36 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.96 Total: 49.32 kcal Total: -81.93 5.06 -76.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881480086.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.371 kcal (2) G-P(sol) polarization free energy of solvation -81.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds