Wall clock time and date at job start Mon Mar 30 2020 02:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47849 * 2 1 4 4 C 1.50700 * 109.47078 * 240.00296 * 2 1 3 5 5 H 1.08004 * 119.99946 * 240.00575 * 4 2 1 6 6 C 1.37881 * 120.00194 * 59.99888 * 4 2 1 7 7 N 1.31520 * 119.99480 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00187 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47130 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47059 * 120.00393 * 8 6 4 11 11 H 1.48497 * 109.47167 * 240.00048 * 8 6 4 12 12 C 1.50697 * 109.47203 * 120.00370 * 2 1 3 13 13 O 1.21299 * 120.00017 * 119.99423 * 12 2 1 14 14 N 1.34771 * 120.00200 * 299.99796 * 12 2 1 15 15 C 1.40108 * 120.00465 * 185.26707 * 14 12 2 16 16 C 1.38869 * 120.18990 * 33.14670 * 15 14 12 17 17 C 1.37864 * 120.27530 * 180.22207 * 16 15 14 18 18 C 1.39291 * 120.34069 * 359.97438 * 17 16 15 19 19 C 1.38885 * 118.98614 * 359.64029 * 18 17 16 20 20 C 1.37700 * 120.85537 * 0.57235 * 19 18 17 21 21 C 1.51653 * 107.04395 * 180.58140 * 19 18 17 22 22 C 1.54709 * 101.91486 * 15.70747 * 21 19 18 23 23 H 1.08998 * 110.74447 * 93.12334 * 22 21 19 24 24 C 1.53000 * 110.74832 * 216.28898 * 22 21 19 25 25 O 1.36227 * 129.79054 * 179.60257 * 18 17 16 26 26 H 1.08994 * 109.47678 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46733 * 300.00021 * 1 2 3 28 28 H 1.09001 * 109.47149 * 59.99371 * 1 2 3 29 29 H 0.97002 * 119.99359 * 180.02562 * 7 6 4 30 30 H 0.97000 * 120.00013 * 5.26209 * 14 12 2 31 31 H 1.08001 * 119.86129 * 0.20464 * 16 15 14 32 32 H 1.08010 * 119.82765 * 180.02562 * 17 16 15 33 33 H 1.07998 * 120.03766 * 179.59858 * 20 19 18 34 34 H 1.08999 * 110.94291 * 257.55309 * 21 19 18 35 35 H 1.09003 * 110.94508 * 133.86199 * 21 19 18 36 36 H 1.09005 * 109.47174 * 59.99733 * 24 22 21 37 37 H 1.09000 * 109.47063 * 179.97438 * 24 22 21 38 38 H 1.08994 * 109.47105 * 300.00144 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3212 -1.1202 -4.0080 9 1 3.1453 -2.2875 -3.6039 10 1 1.1659 -1.5864 -4.8162 11 1 3.1465 -0.1872 -4.8165 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6967 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 2.2621 -0.8425 3.5963 16 6 3.5511 -1.3576 3.5591 17 6 4.0976 -1.9450 4.6803 18 6 3.3627 -2.0270 5.8607 19 6 2.0772 -1.5020 5.8910 20 6 1.5261 -0.9183 4.7722 21 6 1.5401 -1.7222 7.2921 22 6 2.8305 -2.0464 8.0815 23 1 3.2470 -1.1435 8.5282 24 6 2.5588 -3.1034 9.1538 25 8 3.7040 -2.5654 7.0646 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.7088 1.1616 -3.4844 30 1 1.0881 0.4914 2.5451 31 1 4.1279 -1.2980 2.6479 32 1 5.1011 -2.3428 4.6433 33 1 0.5229 -0.5201 4.8087 34 1 0.8472 -2.5632 7.3160 35 1 1.0664 -0.8180 7.6743 36 1 2.1970 -4.0163 8.6806 37 1 3.4801 -3.3161 9.6961 38 1 1.8056 -2.7312 9.8482 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885596150.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:35 Heat of formation + Delta-G solvation = -48.933415 kcal Electronic energy + Delta-G solvation = -20606.216629 eV Core-core repulsion = 17413.787853 eV Total energy + Delta-G solvation = -3192.428775 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.12800 -39.49163 -37.10518 -33.86996 -33.79556 -33.19922 -31.04903 -30.57986 -28.69546 -26.47580 -25.19820 -23.35857 -22.26487 -21.77770 -21.32817 -19.32854 -17.55844 -17.23850 -16.69747 -16.19151 -15.88483 -15.05230 -14.59784 -14.42584 -13.95194 -13.72201 -13.55692 -13.19667 -13.07489 -12.92953 -12.60494 -12.47463 -12.36279 -12.22951 -11.64343 -11.39529 -11.15377 -11.04838 -10.78897 -10.71330 -10.59154 -10.33119 -10.01332 -9.46784 -9.02848 -8.84051 -8.65265 -8.38922 -7.39938 -6.08253 -4.11769 1.43791 1.47887 3.19680 3.30231 3.38042 3.45364 3.46146 3.68889 3.98292 4.34484 4.40610 4.45065 4.73154 4.89804 5.00349 5.17499 5.25535 5.27127 5.37526 5.50370 5.56152 5.62445 5.77600 5.83326 5.95786 6.12896 6.16405 6.46333 6.50974 6.59733 6.68912 6.75370 6.85231 7.05499 7.35926 7.42599 7.69279 7.90092 8.04045 8.30651 8.97174 9.03611 9.54221 10.99452 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.045960 B = 0.003472 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.079450 B = 8061.724249 C = 8470.029236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.031 3.969 3 H 0.057 0.943 4 C -0.503 4.503 5 H 0.076 0.924 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.519 3.481 13 O -0.524 6.524 14 N -0.687 5.687 15 C 0.141 3.859 16 C -0.090 4.090 17 C -0.115 4.115 18 C 0.074 3.926 19 C -0.158 4.158 20 C -0.108 4.108 21 C -0.103 4.103 22 C 0.077 3.923 23 H 0.083 0.917 24 C -0.149 4.149 25 O -0.306 6.306 26 H 0.033 0.967 27 H 0.012 0.988 28 H 0.095 0.905 29 H 0.261 0.739 30 H 0.407 0.593 31 H 0.146 0.854 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.153 -1.233 20.452 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.010 3.990 3 H 0.075 0.925 4 C -0.541 4.541 5 H 0.094 0.906 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.728 3.272 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.310 3.690 13 O -0.397 6.397 14 N -0.333 5.333 15 C 0.046 3.954 16 C -0.111 4.111 17 C -0.134 4.134 18 C 0.029 3.971 19 C -0.160 4.160 20 C -0.129 4.129 21 C -0.140 4.140 22 C 0.020 3.980 23 H 0.101 0.899 24 C -0.206 4.206 25 O -0.221 6.221 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.243 0.757 31 H 0.163 0.837 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.447 -1.977 20.188 20.290 hybrid contribution -0.267 0.080 -0.756 0.806 sum 0.179 -1.898 19.433 19.526 Atomic orbital electron populations 1.21777 0.96368 1.00029 1.01123 1.18916 0.94320 0.96918 0.88841 0.92527 1.21171 1.31168 1.12913 0.88871 0.90600 1.24951 0.95035 0.95037 0.99178 1.69877 1.37034 1.23047 1.23569 0.86381 0.78646 0.79794 0.82362 1.19501 1.21018 1.21002 1.22285 0.78644 0.84003 0.84100 1.90554 1.37233 1.25663 1.86295 1.44095 1.48179 1.36446 1.04562 1.17701 0.92286 0.98327 0.87096 1.20993 0.93811 0.98070 0.98195 1.20127 1.00056 1.03178 0.90037 1.19422 0.93392 0.96953 0.87338 1.20404 0.95017 1.04467 0.96066 1.19966 0.99323 1.02229 0.91336 1.21821 0.97868 1.03067 0.91229 1.23306 0.88523 0.97160 0.88965 0.89869 1.21878 1.02566 0.98757 0.97426 1.86825 1.56811 1.63869 1.14573 0.94814 0.96866 0.88601 0.92929 0.75741 0.83661 0.85425 0.85687 0.89263 0.89337 0.91415 0.91455 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.86 37.16 0.33 -2.68 16 2 C 0.03 0.75 2.65 -92.93 -0.25 0.51 16 3 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 4 C -0.50 -13.98 8.37 -34.44 -0.29 -14.27 16 5 H 0.08 2.23 6.75 -52.48 -0.35 1.88 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -24.73 11.32 55.43 0.63 -24.10 16 8 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.52 11.55 6.89 -10.99 -0.08 11.48 16 13 O -0.52 -13.23 13.15 5.54 0.07 -13.15 16 14 N -0.69 -12.10 5.28 -9.81 -0.05 -12.15 16 15 C 0.14 2.38 6.29 -83.59 -0.53 1.86 16 16 C -0.09 -1.57 8.64 -39.49 -0.34 -1.91 16 17 C -0.11 -1.78 10.05 -39.33 -0.40 -2.18 16 18 C 0.07 1.10 7.04 -38.95 -0.27 0.82 16 19 C -0.16 -2.14 6.26 -104.11 -0.65 -2.79 16 20 C -0.11 -1.53 9.96 -39.52 -0.39 -1.92 16 21 C -0.10 -1.00 6.65 -26.51 -0.18 -1.18 16 22 C 0.08 0.74 4.26 -25.83 -0.11 0.63 16 23 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 24 C -0.15 -1.05 9.59 37.16 0.36 -0.70 16 25 O -0.31 -4.16 10.81 -20.46 -0.22 -4.38 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.01 0.23 7.45 -51.93 -0.39 -0.16 16 28 H 0.10 2.36 6.07 -51.93 -0.32 2.05 16 29 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.41 5.97 8.10 -40.82 -0.33 5.64 16 31 H 0.15 2.78 6.41 -52.49 -0.34 2.44 16 32 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 33 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.09 0.80 7.92 -51.93 -0.41 0.39 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 316.36 15.07 4.77 4.77 Total: -1.00 -31.21 316.36 -7.79 -39.00 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.08 Total: 4.30 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -2.89 Total: -10.82 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.58 Total: -36.26 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.15 Total: -17.54 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.21 -7.79 -39.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885596150.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.936 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds