Wall clock time and date at job start Mon Mar 30 2020 02:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47519 * 2 1 4 4 C 1.50700 * 109.46677 * 119.99842 * 2 1 3 5 5 H 1.08004 * 119.99946 * 120.00205 * 4 2 1 6 6 C 1.37881 * 120.00194 * 299.99518 * 4 2 1 7 7 N 1.31520 * 119.99480 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00187 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47069 * 60.00465 * 8 6 4 10 10 H 1.48503 * 109.47091 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47212 * 300.00380 * 8 6 4 12 12 C 1.50697 * 109.47062 * 239.99436 * 2 1 3 13 13 O 1.21299 * 120.00017 * 240.00106 * 12 2 1 14 14 N 1.34771 * 120.00200 * 60.00479 * 12 2 1 15 15 C 1.40112 * 120.00345 * 185.27732 * 14 12 2 16 16 C 1.38866 * 120.19060 * 33.14636 * 15 14 12 17 17 C 1.37861 * 120.28094 * 180.22010 * 16 15 14 18 18 C 1.39300 * 120.33017 * 359.97438 * 17 16 15 19 19 C 1.38882 * 118.99106 * 359.64132 * 18 17 16 20 20 C 1.37696 * 120.85395 * 0.56987 * 19 18 17 21 21 C 1.51661 * 107.04151 * 180.58196 * 19 18 17 22 22 C 1.54703 * 101.91638 * 15.70322 * 21 19 18 23 23 H 1.09006 * 110.74417 * 93.12407 * 22 21 19 24 24 C 1.52991 * 110.74690 * 216.28875 * 22 21 19 25 25 O 1.36231 * 129.78631 * 179.59660 * 18 17 16 26 26 H 1.08997 * 109.47519 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47300 * 300.00644 * 1 2 3 28 28 H 1.09005 * 109.46595 * 60.00198 * 1 2 3 29 29 H 0.97002 * 119.99359 * 180.02562 * 7 6 4 30 30 H 0.97005 * 119.99869 * 5.27689 * 14 12 2 31 31 H 1.08005 * 119.86050 * 0.19599 * 16 15 14 32 32 H 1.07989 * 119.83772 * 179.97438 * 17 16 15 33 33 H 1.08004 * 120.03724 * 179.59655 * 20 19 18 34 34 H 1.08998 * 110.93799 * 257.54684 * 21 19 18 35 35 H 1.08999 * 110.94059 * 133.86509 * 21 19 18 36 36 H 1.09000 * 109.47598 * 60.00280 * 24 22 21 37 37 H 1.09003 * 109.47334 * 179.97438 * 24 22 21 38 38 H 1.08998 * 109.47307 * 299.99843 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8299 2.6033 8 14 2.3223 -1.1194 4.0081 9 1 3.8073 -1.1188 4.0079 10 1 1.8277 -0.4189 5.2205 11 1 1.8278 -2.5196 4.0083 12 6 2.0323 -0.7105 -1.2304 13 8 2.7297 -1.6967 -1.1190 14 7 1.7068 -0.2502 -2.4545 15 6 2.0800 -0.9714 -3.5963 16 6 2.1356 -2.3584 -3.5590 17 6 2.5069 -3.0697 -4.6800 18 6 2.8293 -2.4041 -5.8606 19 6 2.7631 -1.0172 -5.8910 20 6 2.3968 -0.3030 -4.7722 21 6 3.1497 -0.5845 -7.2922 22 6 3.0249 -1.9092 -8.0815 23 1 2.0348 -2.0007 -8.5281 24 6 4.1119 -2.0056 -9.1538 25 8 3.2230 -2.9056 -7.0645 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.7087 1.1615 3.4843 30 1 1.2141 0.5805 -2.5451 31 1 1.8872 -2.8822 -2.6477 32 1 2.5481 -4.1481 -4.6429 33 1 2.3560 0.7757 -4.8088 34 1 4.1737 -0.2117 -7.3161 35 1 2.4553 0.1637 -7.6744 36 1 5.0933 -1.9691 -8.6808 37 1 4.0051 -2.9451 -9.6960 38 1 4.0122 -1.1715 -9.8484 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885596153.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:40 Heat of formation + Delta-G solvation = -48.887991 kcal Electronic energy + Delta-G solvation = -20610.029584 eV Core-core repulsion = 17417.602779 eV Total energy + Delta-G solvation = -3192.426805 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.12758 -39.49083 -37.10371 -33.86249 -33.79505 -33.19913 -31.04078 -30.58250 -28.69561 -26.48379 -25.19025 -23.35439 -22.25272 -21.77803 -21.33845 -19.32432 -17.55230 -17.21872 -16.67914 -16.17895 -15.88240 -15.12956 -14.62001 -14.45503 -13.97606 -13.64035 -13.53008 -13.19495 -13.05211 -12.91658 -12.65865 -12.47104 -12.31654 -12.23000 -11.63370 -11.41488 -11.11975 -11.03399 -10.79016 -10.73135 -10.63228 -10.31453 -10.01267 -9.45991 -9.05179 -8.84397 -8.64469 -8.38301 -7.39697 -6.07712 -4.11479 1.43894 1.47891 3.19805 3.34513 3.37071 3.41901 3.45581 3.69533 3.98090 4.34517 4.40628 4.45131 4.73170 4.89803 5.00374 5.17490 5.25602 5.27328 5.37513 5.50325 5.56185 5.62404 5.77626 5.83406 5.95637 6.13036 6.16686 6.46353 6.52499 6.61162 6.69388 6.76258 6.84674 7.05933 7.37266 7.41824 7.69025 7.90144 8.04835 8.30842 8.96571 9.03623 9.54351 10.99887 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.046399 B = 0.003448 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.316902 B = 8117.775936 C = 8426.862774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.032 3.968 3 H 0.055 0.945 4 C -0.505 4.505 5 H 0.075 0.925 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.518 3.482 13 O -0.524 6.524 14 N -0.686 5.686 15 C 0.142 3.858 16 C -0.090 4.090 17 C -0.115 4.115 18 C 0.074 3.926 19 C -0.158 4.158 20 C -0.108 4.108 21 C -0.103 4.103 22 C 0.077 3.923 23 H 0.083 0.917 24 C -0.149 4.149 25 O -0.306 6.306 26 H 0.032 0.968 27 H 0.095 0.905 28 H 0.013 0.987 29 H 0.262 0.738 30 H 0.407 0.593 31 H 0.146 0.854 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.758 -0.545 -20.427 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.011 3.989 3 H 0.073 0.927 4 C -0.543 4.543 5 H 0.093 0.907 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.310 3.690 13 O -0.398 6.398 14 N -0.332 5.332 15 C 0.046 3.954 16 C -0.110 4.110 17 C -0.134 4.134 18 C 0.029 3.971 19 C -0.160 4.160 20 C -0.129 4.129 21 C -0.140 4.140 22 C 0.020 3.980 23 H 0.101 0.899 24 C -0.206 4.206 25 O -0.221 6.221 26 H 0.052 0.948 27 H 0.114 0.886 28 H 0.032 0.968 29 H 0.072 0.928 30 H 0.242 0.758 31 H 0.163 0.837 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.257 -1.349 -20.158 20.242 hybrid contribution 0.020 0.242 0.743 0.781 sum 1.277 -1.107 -19.415 19.488 Atomic orbital electron populations 1.21766 0.96218 1.00036 1.01144 1.18893 0.94273 0.96955 0.88787 0.92724 1.21087 1.31317 1.12987 0.88902 0.90720 1.24946 0.95006 0.95035 0.99151 1.69859 1.36893 1.23009 1.23780 0.86481 0.79317 0.79714 0.81500 1.20145 1.21345 1.20132 1.22294 0.77929 0.84723 0.84094 1.90552 1.36192 1.26735 1.86295 1.44086 1.57857 1.26728 1.04557 1.17697 0.99296 0.91302 0.87092 1.20992 0.99236 0.92621 0.98191 1.20127 1.03147 1.00086 0.90038 1.19425 0.98688 0.91663 0.87336 1.20403 1.05933 0.93557 0.96065 1.19962 1.02148 0.99438 0.91331 1.21821 1.02994 0.97939 0.91228 1.23303 0.99793 0.85894 0.88964 0.89871 1.21876 0.98368 1.02957 0.97426 1.86825 1.80399 1.40284 1.14572 0.94834 0.88614 0.96792 0.92812 0.75759 0.83675 0.85434 0.85682 0.89264 0.89339 0.91415 0.91457 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.87 37.16 0.33 -2.65 16 2 C 0.03 0.77 2.64 -92.93 -0.24 0.53 16 3 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 4 C -0.50 -14.05 8.37 -34.44 -0.29 -14.33 16 5 H 0.07 2.19 6.75 -52.48 -0.35 1.83 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -24.75 11.32 55.43 0.63 -24.12 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.52 11.55 6.89 -10.99 -0.08 11.47 16 13 O -0.52 -13.23 13.15 5.54 0.07 -13.15 16 14 N -0.69 -12.08 5.21 -9.81 -0.05 -12.13 16 15 C 0.14 2.38 6.29 -83.59 -0.53 1.86 16 16 C -0.09 -1.57 8.64 -39.49 -0.34 -1.91 16 17 C -0.11 -1.78 10.06 -39.32 -0.40 -2.18 16 18 C 0.07 1.10 7.04 -38.95 -0.27 0.82 16 19 C -0.16 -2.13 6.26 -104.11 -0.65 -2.79 16 20 C -0.11 -1.53 9.95 -39.53 -0.39 -1.92 16 21 C -0.10 -1.00 6.65 -26.51 -0.18 -1.18 16 22 C 0.08 0.74 4.26 -25.84 -0.11 0.63 16 23 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 24 C -0.15 -1.05 9.58 37.15 0.36 -0.70 16 25 O -0.31 -4.17 10.81 -20.48 -0.22 -4.39 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.10 2.36 6.07 -51.93 -0.32 2.04 16 28 H 0.01 0.25 7.69 -51.93 -0.40 -0.15 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.41 5.94 8.41 -40.82 -0.34 5.60 16 31 H 0.15 2.79 6.41 -52.48 -0.34 2.46 16 32 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 34 H 0.09 0.80 7.92 -51.93 -0.41 0.39 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 316.83 15.07 4.77 4.77 Total: -1.00 -31.18 316.83 -7.80 -38.98 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.10 Total: 4.26 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -2.89 Total: -10.81 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.58 Total: -36.25 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.15 Total: -17.54 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.18 -7.80 -38.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885596153.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.905 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds