Wall clock time and date at job start Mon Mar 30 2020 02:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47519 * 2 1 4 4 C 1.50700 * 109.46677 * 119.99842 * 2 1 3 5 5 H 1.08004 * 119.99946 * 120.00205 * 4 2 1 6 6 C 1.37881 * 120.00194 * 299.99518 * 4 2 1 7 7 N 1.31520 * 119.99480 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00187 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47069 * 60.00465 * 8 6 4 10 10 H 1.48503 * 109.47091 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47212 * 300.00380 * 8 6 4 12 12 C 1.50697 * 109.47062 * 239.99436 * 2 1 3 13 13 O 1.21299 * 120.00017 * 240.00106 * 12 2 1 14 14 N 1.34771 * 120.00200 * 60.00479 * 12 2 1 15 15 C 1.40112 * 120.00345 * 185.27732 * 14 12 2 16 16 C 1.38866 * 120.19060 * 33.14636 * 15 14 12 17 17 C 1.37861 * 120.28094 * 180.22010 * 16 15 14 18 18 C 1.39300 * 120.33017 * 359.97438 * 17 16 15 19 19 C 1.38882 * 118.99106 * 359.64132 * 18 17 16 20 20 C 1.37696 * 120.85395 * 0.56987 * 19 18 17 21 21 C 1.51661 * 107.04151 * 180.58196 * 19 18 17 22 22 C 1.54703 * 101.91638 * 15.70322 * 21 19 18 23 23 H 1.09006 * 110.74417 * 93.12407 * 22 21 19 24 24 C 1.52991 * 110.74690 * 216.28875 * 22 21 19 25 25 O 1.36231 * 129.78631 * 179.59660 * 18 17 16 26 26 H 1.08997 * 109.47519 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47300 * 300.00644 * 1 2 3 28 28 H 1.09005 * 109.46595 * 60.00198 * 1 2 3 29 29 H 0.97002 * 119.99359 * 180.02562 * 7 6 4 30 30 H 0.97005 * 119.99869 * 5.27689 * 14 12 2 31 31 H 1.08005 * 119.86050 * 0.19599 * 16 15 14 32 32 H 1.07989 * 119.83772 * 179.97438 * 17 16 15 33 33 H 1.08004 * 120.03724 * 179.59655 * 20 19 18 34 34 H 1.08998 * 110.93799 * 257.54684 * 21 19 18 35 35 H 1.08999 * 110.94059 * 133.86509 * 21 19 18 36 36 H 1.09000 * 109.47598 * 60.00280 * 24 22 21 37 37 H 1.09003 * 109.47334 * 179.97438 * 24 22 21 38 38 H 1.08998 * 109.47307 * 299.99843 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8299 2.6033 8 14 2.3223 -1.1194 4.0081 9 1 3.8073 -1.1188 4.0079 10 1 1.8277 -0.4189 5.2205 11 1 1.8278 -2.5196 4.0083 12 6 2.0323 -0.7105 -1.2304 13 8 2.7297 -1.6967 -1.1190 14 7 1.7068 -0.2502 -2.4545 15 6 2.0800 -0.9714 -3.5963 16 6 2.1356 -2.3584 -3.5590 17 6 2.5069 -3.0697 -4.6800 18 6 2.8293 -2.4041 -5.8606 19 6 2.7631 -1.0172 -5.8910 20 6 2.3968 -0.3030 -4.7722 21 6 3.1497 -0.5845 -7.2922 22 6 3.0249 -1.9092 -8.0815 23 1 2.0348 -2.0007 -8.5281 24 6 4.1119 -2.0056 -9.1538 25 8 3.2230 -2.9056 -7.0645 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.7087 1.1615 3.4843 30 1 1.2141 0.5805 -2.5451 31 1 1.8872 -2.8822 -2.6477 32 1 2.5481 -4.1481 -4.6429 33 1 2.3560 0.7757 -4.8088 34 1 4.1737 -0.2117 -7.3161 35 1 2.4553 0.1637 -7.6744 36 1 5.0933 -1.9691 -8.6808 37 1 4.0051 -2.9451 -9.6960 38 1 4.0122 -1.1715 -9.8484 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885596153.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:39 Heat of formation + Delta-G solvation = -68.022612 kcal Electronic energy + Delta-G solvation = -20610.859324 eV Core-core repulsion = 17417.602779 eV Total energy + Delta-G solvation = -3193.256545 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.19175 -41.01867 -38.43443 -35.81738 -35.30011 -34.09196 -32.60628 -31.88683 -29.95393 -27.39511 -27.21695 -25.00755 -23.38051 -22.80038 -22.58523 -20.88436 -18.83482 -18.49245 -18.14446 -17.77899 -17.33670 -16.54108 -16.32312 -15.88931 -15.20506 -14.98463 -14.75532 -14.51810 -14.30005 -14.16815 -13.83510 -13.57638 -13.37136 -13.35581 -13.02574 -12.97704 -12.72530 -12.60742 -12.26921 -12.14712 -12.09045 -12.00555 -11.65992 -11.07802 -10.81164 -10.61624 -10.36320 -9.88171 -8.65209 -8.16753 -6.27200 0.23469 0.28440 1.41507 1.42492 1.51060 1.80250 2.15322 2.32548 2.47124 2.73368 3.13337 3.45398 3.61861 3.86783 4.04532 4.09966 4.23710 4.31439 4.38006 4.55656 4.68714 4.72860 4.74730 4.81245 4.89598 4.92457 4.99000 5.05817 5.12737 5.26570 5.31814 5.33663 5.44408 5.48990 5.71816 5.79156 5.92843 6.18262 6.24756 6.63044 6.81600 7.33642 7.44516 8.88891 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.046399 B = 0.003448 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.316902 B = 8117.775936 C = 8426.862774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.029 3.971 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.050 0.950 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.277 1.277 12 C 0.522 3.478 13 O -0.563 6.563 14 N -0.666 5.666 15 C 0.114 3.886 16 C -0.109 4.109 17 C -0.127 4.127 18 C 0.071 3.929 19 C -0.157 4.157 20 C -0.096 4.096 21 C -0.097 4.097 22 C 0.067 3.933 23 H 0.098 0.902 24 C -0.145 4.145 25 O -0.322 6.322 26 H 0.022 0.978 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.266 0.734 30 H 0.422 0.578 31 H 0.117 0.883 32 H 0.135 0.865 33 H 0.156 0.844 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.770 0.779 -22.884 22.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.008 3.992 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.068 0.932 6 C -0.177 4.177 7 N -0.549 5.549 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.202 1.202 12 C 0.312 3.688 13 O -0.440 6.440 14 N -0.313 5.313 15 C 0.020 3.980 16 C -0.130 4.130 17 C -0.146 4.146 18 C 0.026 3.974 19 C -0.158 4.158 20 C -0.116 4.116 21 C -0.134 4.134 22 C 0.012 3.988 23 H 0.116 0.884 24 C -0.202 4.202 25 O -0.238 6.238 26 H 0.042 0.958 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.261 0.739 31 H 0.134 0.866 32 H 0.152 0.848 33 H 0.174 0.826 34 H 0.120 0.880 35 H 0.137 0.863 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.246 0.007 -22.666 22.700 hybrid contribution 0.038 -0.188 1.330 1.344 sum 1.284 -0.181 -21.336 21.375 Atomic orbital electron populations 1.21586 0.94754 0.99587 1.02009 1.18806 0.95416 0.96161 0.88838 0.93443 1.21256 1.31861 1.12907 0.91058 0.93221 1.25563 0.95124 0.95715 1.01340 1.69932 1.36996 1.23454 1.24470 0.85665 0.78655 0.78744 0.78908 1.20243 1.19889 1.20212 1.21837 0.77701 0.84107 0.85121 1.90536 1.38108 1.28359 1.87044 1.43628 1.57180 1.26961 1.03521 1.17850 1.01423 0.91116 0.87616 1.20825 1.00945 0.93347 0.97874 1.20164 1.03620 1.00590 0.90265 1.19582 0.97788 0.92515 0.87546 1.20881 1.04230 0.93033 0.97674 1.20188 1.00412 1.00913 0.90079 1.21969 1.04427 0.98597 0.88372 1.23712 1.01647 0.84900 0.88544 0.88388 1.21912 0.96960 1.04368 0.96979 1.86825 1.80120 1.42102 1.14721 0.95836 0.90787 0.92741 0.92500 0.73915 0.86553 0.84757 0.82602 0.88019 0.86317 0.92170 0.91236 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.87 71.98 0.64 -4.78 16 2 C 0.03 1.43 2.64 -12.29 -0.03 1.40 16 3 H 0.05 2.39 8.14 -2.39 -0.02 2.38 16 4 C -0.53 -30.56 8.37 25.60 0.21 -30.35 16 5 H 0.05 3.05 6.75 -2.91 -0.02 3.03 16 6 C 0.02 1.23 5.30 84.65 0.45 1.67 16 7 N -0.91 -50.43 11.32 21.45 0.24 -50.19 16 8 Si 0.95 44.76 29.54 68.60 2.03 46.79 16 9 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 C 0.52 23.81 6.89 87.66 0.60 24.41 16 13 O -0.56 -29.80 13.15 -3.09 -0.04 -29.84 16 14 N -0.67 -23.18 5.21 -303.32 -1.58 -24.76 16 15 C 0.11 3.80 6.29 38.13 0.24 4.04 16 16 C -0.11 -3.96 8.64 22.33 0.19 -3.77 16 17 C -0.13 -4.03 10.06 22.44 0.23 -3.80 16 18 C 0.07 2.02 7.04 22.68 0.16 2.18 16 19 C -0.16 -3.80 6.26 -19.53 -0.12 -3.93 16 20 C -0.10 -2.47 9.95 22.30 0.22 -2.25 16 21 C -0.10 -1.48 6.65 30.74 0.20 -1.27 16 22 C 0.07 1.07 4.26 31.17 0.13 1.20 16 23 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 24 C -0.15 -1.55 9.58 71.98 0.69 -0.86 16 25 O -0.32 -8.20 10.81 -96.19 -1.04 -9.24 16 26 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 28 H 0.05 1.93 7.69 -2.38 -0.02 1.91 16 29 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 30 H 0.42 11.64 8.41 -92.70 -0.78 10.86 16 31 H 0.12 4.84 6.41 -2.91 -0.02 4.82 16 32 H 0.13 3.86 8.06 -2.92 -0.02 3.84 16 33 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 34 H 0.10 1.37 7.92 -2.39 -0.02 1.35 16 35 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 38 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -69.54 316.83 3.73 -65.82 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.30 Total: 17.51 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 3.82 Total: -16.09 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -1.34 Total: -74.96 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -1.08 Total: -39.08 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -69.54 3.73 -65.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885596153.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.204 kcal (2) G-P(sol) polarization free energy of solvation -69.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds