Wall clock time and date at job start Mon Mar 30 2020 02:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 110.53599 * 2 1 4 4 C 1.54096 * 110.48887 * 122.61625 * 2 1 3 5 5 O 1.43743 * 107.29476 * 116.64608 * 4 2 1 6 6 C 1.44381 * 106.97411 * 26.51250 * 5 4 2 7 7 H 1.08998 * 110.74914 * 78.50535 * 6 5 4 8 8 C 1.50701 * 110.61972 * 201.44093 * 6 5 4 9 9 O 1.21278 * 119.99594 * 359.07003 * 8 6 5 10 10 N 1.34775 * 120.00054 * 178.79785 * 8 6 5 11 11 C 1.37141 * 119.99936 * 356.31278 * 10 8 6 12 12 H 1.07998 * 119.99840 * 320.18285 * 11 10 8 13 13 C 1.38887 * 119.99761 * 140.17566 * 11 10 8 14 14 N 1.31425 * 119.99709 * 163.27836 * 13 11 10 15 15 Si 1.86799 * 120.00270 * 343.28131 * 13 11 10 16 16 H 1.48499 * 109.47029 * 87.54582 * 15 13 11 17 17 H 1.48501 * 109.47059 * 207.54255 * 15 13 11 18 18 H 1.48496 * 109.47138 * 327.54606 * 15 13 11 19 19 C 1.39785 * 119.99686 * 176.31105 * 10 8 6 20 20 C 1.38959 * 120.08387 * 304.52059 * 19 10 8 21 21 C 1.38078 * 119.92159 * 179.77212 * 20 19 10 22 22 C 1.38311 * 120.08000 * 0.50687 * 21 20 19 23 23 C 1.38301 * 120.15521 * 359.74453 * 22 21 20 24 24 C 1.38088 * 120.07708 * 0.02562 * 23 22 21 25 25 C 1.54813 * 110.48697 * 237.38296 * 2 1 3 26 26 H 1.08998 * 109.46947 * 182.61540 * 1 2 3 27 27 H 1.09002 * 109.47012 * 302.61467 * 1 2 3 28 28 H 1.08999 * 109.47056 * 62.61619 * 1 2 3 29 29 H 1.09000 * 109.88168 * 236.07309 * 4 2 1 30 30 H 1.09009 * 109.88105 * 357.22137 * 4 2 1 31 31 H 0.97007 * 120.00134 * 180.02562 * 14 13 11 32 32 H 1.08001 * 120.03232 * 0.02562 * 20 19 10 33 33 H 1.08008 * 119.96261 * 180.25515 * 21 20 19 34 34 H 1.07998 * 119.91820 * 179.72570 * 22 21 20 35 35 H 1.08004 * 119.96276 * 180.02562 * 23 22 21 36 36 H 1.07997 * 120.03621 * 179.97438 * 24 23 22 37 37 H 1.09004 * 110.90398 * 102.24181 * 25 2 1 38 38 H 1.08998 * 110.93330 * 338.65492 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0695 -0.7780 1.2158 5 8 2.7956 -1.9109 0.7103 6 6 3.2660 -1.5561 -0.6078 7 1 4.1464 -0.9166 -0.5444 8 6 3.5673 -2.7928 -1.4145 9 8 3.4180 -3.8903 -0.9204 10 7 3.9975 -2.6793 -2.6867 11 6 4.0887 -1.4424 -3.2719 12 1 3.3236 -0.7018 -3.0914 13 6 5.1652 -1.1420 -4.0965 14 7 5.1029 -0.1109 -4.9089 15 14 6.7015 -2.2036 -4.0508 16 1 6.5470 -3.3389 -4.9955 17 1 7.8785 -1.3884 -4.4450 18 1 6.9004 -2.7276 -2.6756 19 6 4.3505 -3.8224 -3.4097 20 6 5.3076 -4.6960 -2.9078 21 6 5.6504 -5.8265 -3.6225 22 6 5.0501 -6.0846 -4.8415 23 6 4.1010 -5.2146 -5.3466 24 6 3.7498 -4.0845 -4.6350 25 6 2.0719 -0.7817 -1.2215 26 1 -0.3633 -1.0266 0.0469 27 1 -0.3633 0.5539 0.8656 28 1 -0.3633 0.4727 -0.9125 29 1 2.7351 -0.1409 1.7981 30 1 1.2401 -1.1165 1.8370 31 1 5.8546 0.0987 -5.4852 32 1 5.7797 -4.4929 -1.9579 33 1 6.3912 -6.5082 -3.2311 34 1 5.3234 -6.9674 -5.4004 35 1 3.6339 -5.4194 -6.2986 36 1 3.0089 -3.4054 -5.0302 37 1 2.4103 -0.0991 -2.0011 38 1 1.3200 -1.4693 -1.6086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888563966.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:41 Heat of formation + Delta-G solvation = -37.989763 kcal Electronic energy + Delta-G solvation = -21991.354503 eV Core-core repulsion = 18799.400280 eV Total energy + Delta-G solvation = -3191.954223 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.13591 -38.91446 -37.24729 -34.99244 -33.17837 -32.17492 -30.46737 -30.28856 -28.48469 -26.10187 -25.18959 -23.48957 -21.96794 -21.59265 -20.22622 -19.05973 -18.03850 -16.80811 -16.21985 -15.74001 -15.44652 -14.76270 -14.67115 -14.55788 -14.00269 -13.66114 -13.55230 -12.97203 -12.85169 -12.70384 -12.48541 -12.34506 -12.27666 -12.15452 -11.30652 -11.07256 -10.99565 -10.85930 -10.68546 -10.64168 -10.54969 -10.43272 -9.88574 -9.35355 -9.29365 -8.77659 -8.50880 -8.26191 -7.53758 -6.60769 -4.31821 1.92675 2.03723 3.12461 3.24727 3.30577 3.51146 3.75994 4.11711 4.42426 4.59722 4.80984 4.97353 5.01041 5.18934 5.47919 5.50548 5.52932 5.59988 5.62270 5.69987 5.75216 5.91240 5.96199 6.06211 6.06701 6.12558 6.20028 6.25297 6.36377 6.43085 6.52231 6.63530 6.94934 7.09243 7.16399 7.20059 7.30662 7.61894 7.91884 8.16143 8.77217 9.12844 9.45234 10.45897 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019965 B = 0.007159 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.123310 B = 3910.300024 C = 4501.346514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.130 4.130 3 H 0.083 0.917 4 C 0.049 3.951 5 O -0.357 6.357 6 C 0.081 3.919 7 H 0.097 0.903 8 C 0.495 3.505 9 O -0.557 6.557 10 N -0.422 5.422 11 C -0.367 4.367 12 H 0.122 0.878 13 C 0.083 3.917 14 N -0.853 5.853 15 Si 0.861 3.139 16 H -0.258 1.258 17 H -0.289 1.289 18 H -0.259 1.259 19 C 0.163 3.837 20 C -0.131 4.131 21 C -0.114 4.114 22 C -0.147 4.147 23 C -0.114 4.114 24 C -0.116 4.116 25 C -0.135 4.135 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.278 0.722 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.105 0.895 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.409 -0.876 3.281 4.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 H 0.102 0.898 4 C -0.028 4.028 5 O -0.276 6.276 6 C 0.021 3.979 7 H 0.115 0.885 8 C 0.285 3.715 9 O -0.437 6.437 10 N -0.139 5.139 11 C -0.492 4.492 12 H 0.139 0.861 13 C -0.127 4.127 14 N -0.487 5.487 15 Si 0.687 3.313 16 H -0.183 1.183 17 H -0.215 1.215 18 H -0.183 1.183 19 C 0.070 3.930 20 C -0.151 4.151 21 C -0.133 4.133 22 C -0.166 4.166 23 C -0.132 4.132 24 C -0.136 4.136 25 C -0.173 4.173 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.146 0.854 37 H 0.124 0.876 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.392 -1.446 3.533 5.107 hybrid contribution 0.943 0.010 -0.281 0.984 sum -2.449 -1.436 3.252 4.317 Atomic orbital electron populations 1.21798 0.94283 1.02024 1.01645 1.22580 0.96763 1.00186 0.95360 0.89821 1.23252 0.95496 0.88194 0.95848 1.88947 1.71945 1.36584 1.30098 1.22635 0.98180 0.94344 0.82718 0.88542 1.20255 0.80310 0.89713 0.81263 1.90611 1.54817 1.27995 1.70268 1.41360 1.58615 1.04966 1.08957 1.19474 1.09891 0.89102 1.30712 0.86141 1.25336 0.97740 0.95445 0.94156 1.69701 1.31936 1.27344 1.19703 0.87037 0.82643 0.80830 0.80806 1.18263 1.21548 1.18343 1.17872 0.94275 0.88007 0.92820 1.21157 0.97463 0.95858 1.00670 1.20843 1.00248 0.96902 0.95295 1.20927 0.99050 0.99983 0.96633 1.20907 0.98232 0.94710 0.99400 1.21129 0.99962 0.97180 0.95338 1.23288 0.96728 0.99433 0.97837 0.92374 0.92769 0.92268 0.92721 0.90152 0.91159 0.86392 0.86592 0.86808 0.86430 0.85361 0.87638 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.92 37.16 0.33 -1.32 16 2 C -0.13 -1.81 3.65 -89.09 -0.32 -2.13 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.05 0.73 7.37 37.73 0.28 1.01 16 5 O -0.36 -7.18 10.80 -54.30 -0.59 -7.77 16 6 C 0.08 1.66 3.02 -26.83 -0.08 1.58 16 7 H 0.10 1.92 8.12 -51.93 -0.42 1.50 16 8 C 0.49 11.87 6.89 -10.99 -0.08 11.79 16 9 O -0.56 -14.78 15.80 -13.51 -0.21 -14.99 16 10 N -0.42 -10.18 2.33 -58.98 -0.14 -10.31 16 11 C -0.37 -9.04 8.50 -14.94 -0.13 -9.16 16 12 H 0.12 2.93 4.62 -52.49 -0.24 2.69 16 13 C 0.08 2.12 5.32 -17.49 -0.09 2.03 16 14 N -0.85 -22.49 13.96 55.49 0.77 -21.72 16 15 Si 0.86 20.60 24.04 -169.99 -4.09 16.51 16 16 H -0.26 -6.19 7.08 56.52 0.40 -5.79 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.26 -6.27 6.29 56.52 0.36 -5.91 16 19 C 0.16 3.82 2.58 -83.70 -0.22 3.61 16 20 C -0.13 -2.93 6.01 -39.37 -0.24 -3.17 16 21 C -0.11 -2.17 10.04 -39.61 -0.40 -2.57 16 22 C -0.15 -2.58 10.04 -39.53 -0.40 -2.98 16 23 C -0.11 -2.09 10.04 -39.61 -0.40 -2.49 16 24 C -0.12 -2.50 9.22 -39.37 -0.36 -2.86 16 25 C -0.14 -2.36 5.15 -24.72 -0.13 -2.49 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.06 7.69 -51.92 -0.40 0.66 16 31 H 0.28 6.95 8.31 -40.82 -0.34 6.62 16 32 H 0.12 2.71 7.64 -52.49 -0.40 2.31 16 33 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16 34 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 35 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 36 H 0.13 2.72 8.04 -52.49 -0.42 2.30 16 37 H 0.11 1.89 5.78 -51.93 -0.30 1.59 16 38 H 0.07 1.37 7.78 -51.93 -0.40 0.97 16 LS Contribution 306.98 15.07 4.63 4.63 Total: -1.00 -29.83 306.98 -7.00 -36.84 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.15 Total: 5.97 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -2.23 Total: -9.15 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.64 Total: -32.03 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.80 Total: -22.76 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.09 Total: 16.51 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.83 -7.00 -36.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888563966.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.153 kcal (2) G-P(sol) polarization free energy of solvation -29.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds