Wall clock time and date at job start Mon Mar 30 2020 02:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 110.53599 * 2 1 4 4 C 1.54096 * 110.48887 * 122.61625 * 2 1 3 5 5 O 1.43743 * 107.29476 * 116.64608 * 4 2 1 6 6 C 1.44381 * 106.97411 * 26.51250 * 5 4 2 7 7 H 1.08998 * 110.74914 * 78.50535 * 6 5 4 8 8 C 1.50701 * 110.61972 * 201.44093 * 6 5 4 9 9 O 1.21278 * 119.99594 * 359.07003 * 8 6 5 10 10 N 1.34775 * 120.00054 * 178.79785 * 8 6 5 11 11 C 1.37141 * 119.99936 * 356.31278 * 10 8 6 12 12 H 1.07998 * 119.99840 * 320.18285 * 11 10 8 13 13 C 1.38887 * 119.99761 * 140.17566 * 11 10 8 14 14 N 1.31425 * 119.99709 * 163.27836 * 13 11 10 15 15 Si 1.86799 * 120.00270 * 343.28131 * 13 11 10 16 16 H 1.48499 * 109.47029 * 87.54582 * 15 13 11 17 17 H 1.48501 * 109.47059 * 207.54255 * 15 13 11 18 18 H 1.48496 * 109.47138 * 327.54606 * 15 13 11 19 19 C 1.39785 * 119.99686 * 176.31105 * 10 8 6 20 20 C 1.38959 * 120.08387 * 304.52059 * 19 10 8 21 21 C 1.38078 * 119.92159 * 179.77212 * 20 19 10 22 22 C 1.38311 * 120.08000 * 0.50687 * 21 20 19 23 23 C 1.38301 * 120.15521 * 359.74453 * 22 21 20 24 24 C 1.38088 * 120.07708 * 0.02562 * 23 22 21 25 25 C 1.54813 * 110.48697 * 237.38296 * 2 1 3 26 26 H 1.08998 * 109.46947 * 182.61540 * 1 2 3 27 27 H 1.09002 * 109.47012 * 302.61467 * 1 2 3 28 28 H 1.08999 * 109.47056 * 62.61619 * 1 2 3 29 29 H 1.09000 * 109.88168 * 236.07309 * 4 2 1 30 30 H 1.09009 * 109.88105 * 357.22137 * 4 2 1 31 31 H 0.97007 * 120.00134 * 180.02562 * 14 13 11 32 32 H 1.08001 * 120.03232 * 0.02562 * 20 19 10 33 33 H 1.08008 * 119.96261 * 180.25515 * 21 20 19 34 34 H 1.07998 * 119.91820 * 179.72570 * 22 21 20 35 35 H 1.08004 * 119.96276 * 180.02562 * 23 22 21 36 36 H 1.07997 * 120.03621 * 179.97438 * 24 23 22 37 37 H 1.09004 * 110.90398 * 102.24181 * 25 2 1 38 38 H 1.08998 * 110.93330 * 338.65492 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0695 -0.7780 1.2158 5 8 2.7956 -1.9109 0.7103 6 6 3.2660 -1.5561 -0.6078 7 1 4.1464 -0.9166 -0.5444 8 6 3.5673 -2.7928 -1.4145 9 8 3.4180 -3.8903 -0.9204 10 7 3.9975 -2.6793 -2.6867 11 6 4.0887 -1.4424 -3.2719 12 1 3.3236 -0.7018 -3.0914 13 6 5.1652 -1.1420 -4.0965 14 7 5.1029 -0.1109 -4.9089 15 14 6.7015 -2.2036 -4.0508 16 1 6.5470 -3.3389 -4.9955 17 1 7.8785 -1.3884 -4.4450 18 1 6.9004 -2.7276 -2.6756 19 6 4.3505 -3.8224 -3.4097 20 6 5.3076 -4.6960 -2.9078 21 6 5.6504 -5.8265 -3.6225 22 6 5.0501 -6.0846 -4.8415 23 6 4.1010 -5.2146 -5.3466 24 6 3.7498 -4.0845 -4.6350 25 6 2.0719 -0.7817 -1.2215 26 1 -0.3633 -1.0266 0.0469 27 1 -0.3633 0.5539 0.8656 28 1 -0.3633 0.4727 -0.9125 29 1 2.7351 -0.1409 1.7981 30 1 1.2401 -1.1165 1.8370 31 1 5.8546 0.0987 -5.4852 32 1 5.7797 -4.4929 -1.9579 33 1 6.3912 -6.5082 -3.2311 34 1 5.3234 -6.9674 -5.4004 35 1 3.6339 -5.4194 -6.2986 36 1 3.0089 -3.4054 -5.0302 37 1 2.4103 -0.0991 -2.0011 38 1 1.3200 -1.4693 -1.6086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888563966.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:41 Heat of formation + Delta-G solvation = -55.380368 kcal Electronic energy + Delta-G solvation = -21992.108617 eV Core-core repulsion = 18799.400280 eV Total energy + Delta-G solvation = -3192.708336 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.82455 -40.38532 -38.89380 -36.83997 -34.45527 -34.10666 -31.99775 -31.84436 -30.02784 -27.30060 -27.00054 -25.03027 -23.53967 -23.18263 -21.46738 -20.86589 -19.73838 -18.43611 -17.76543 -17.49397 -16.97961 -16.45319 -16.28703 -16.05044 -15.59206 -15.19226 -14.99796 -14.67902 -14.42940 -14.28499 -14.02975 -13.98559 -13.59165 -13.43512 -13.03398 -12.81864 -12.60930 -12.40788 -12.17676 -12.05425 -11.87865 -11.81574 -11.51748 -11.21861 -10.77728 -10.51257 -10.33132 -9.83978 -9.27197 -8.58122 -6.28491 0.33878 0.46187 1.20693 1.29989 1.37923 1.68270 2.13461 2.18512 2.75663 2.99910 3.21148 3.54703 3.79620 3.89160 3.99591 4.07367 4.14475 4.20275 4.26283 4.33573 4.54687 4.58563 4.66015 4.72152 4.73696 4.75565 4.89243 4.98896 5.06590 5.10549 5.17289 5.36301 5.38385 5.51296 5.56177 5.58534 5.85756 5.97895 6.05983 6.31451 6.84195 7.23226 7.59390 8.50931 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019965 B = 0.007159 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.123310 B = 3910.300024 C = 4501.346514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 H 0.104 0.896 4 C 0.041 3.959 5 O -0.387 6.387 6 C 0.082 3.918 7 H 0.097 0.903 8 C 0.483 3.517 9 O -0.593 6.593 10 N -0.427 5.427 11 C -0.359 4.359 12 H 0.120 0.880 13 C 0.057 3.943 14 N -0.881 5.881 15 Si 0.900 3.100 16 H -0.256 1.256 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.126 3.874 20 C -0.155 4.155 21 C -0.116 4.116 22 C -0.134 4.134 23 C -0.109 4.109 24 C -0.136 4.136 25 C -0.128 4.128 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.281 0.719 32 H 0.097 0.903 33 H 0.149 0.851 34 H 0.163 0.837 35 H 0.157 0.843 36 H 0.120 0.880 37 H 0.098 0.902 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.626 -1.561 2.778 4.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.139 4.139 3 H 0.122 0.878 4 C -0.035 4.035 5 O -0.306 6.306 6 C 0.022 3.978 7 H 0.114 0.886 8 C 0.274 3.726 9 O -0.476 6.476 10 N -0.143 5.143 11 C -0.485 4.485 12 H 0.137 0.863 13 C -0.150 4.150 14 N -0.516 5.516 15 Si 0.726 3.274 16 H -0.181 1.181 17 H -0.214 1.214 18 H -0.198 1.198 19 C 0.034 3.966 20 C -0.176 4.176 21 C -0.134 4.134 22 C -0.152 4.152 23 C -0.127 4.127 24 C -0.156 4.156 25 C -0.166 4.166 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.167 0.833 34 H 0.180 0.820 35 H 0.174 0.826 36 H 0.138 0.862 37 H 0.116 0.884 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.608 -2.127 3.016 5.161 hybrid contribution 0.979 0.104 -0.116 0.992 sum -2.628 -2.023 2.900 4.405 Atomic orbital electron populations 1.21788 0.92453 1.01940 1.03214 1.22591 0.98241 1.00345 0.92708 0.87777 1.23587 0.96197 0.87341 0.96392 1.88912 1.72753 1.39193 1.29768 1.22591 0.99360 0.92775 0.83115 0.88561 1.20912 0.79669 0.90523 0.81474 1.90557 1.56499 1.29526 1.70980 1.41449 1.58439 1.05219 1.09231 1.19536 1.09602 0.89590 1.29749 0.86330 1.25646 0.99022 0.96053 0.94304 1.69730 1.32614 1.28485 1.20766 0.86435 0.81103 0.79965 0.79892 1.18063 1.21401 1.19789 1.18216 0.95784 0.88670 0.93930 1.21211 0.98215 0.97526 1.00621 1.21311 1.00559 0.95953 0.95602 1.21499 0.97133 1.00764 0.95814 1.21405 0.97816 0.93166 1.00339 1.21280 1.00439 0.98686 0.95225 1.23180 0.95324 0.98981 0.99138 0.93417 0.90036 0.91768 0.90638 0.88303 0.90868 0.88500 0.83301 0.81981 0.82579 0.86203 0.88400 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.92 71.99 0.64 -2.29 16 2 C -0.12 -3.15 3.65 -9.80 -0.04 -3.19 16 3 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 4 C 0.04 1.15 7.37 72.35 0.53 1.69 16 5 O -0.39 -15.72 10.80 -130.75 -1.41 -17.13 16 6 C 0.08 3.43 3.02 30.53 0.09 3.52 16 7 H 0.10 3.96 8.12 -2.39 -0.02 3.94 16 8 C 0.48 24.13 6.89 87.66 0.60 24.74 16 9 O -0.59 -32.83 15.80 15.21 0.24 -32.59 16 10 N -0.43 -21.24 2.33 -458.91 -1.07 -22.31 16 11 C -0.36 -18.17 8.50 84.02 0.71 -17.46 16 12 H 0.12 5.94 4.62 -2.91 -0.01 5.93 16 13 C 0.06 2.94 5.32 84.91 0.45 3.39 16 14 N -0.88 -46.83 13.96 21.65 0.30 -46.53 16 15 Si 0.90 42.92 24.04 68.60 1.65 44.57 16 16 H -0.26 -11.97 7.08 99.48 0.70 -11.27 16 17 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 18 H -0.27 -13.46 6.29 99.48 0.63 -12.83 16 19 C 0.13 5.98 2.58 38.22 0.10 6.08 16 20 C -0.16 -6.99 6.01 22.40 0.13 -6.85 16 21 C -0.12 -4.13 10.04 22.25 0.22 -3.91 16 22 C -0.13 -4.16 10.04 22.30 0.22 -3.94 16 23 C -0.11 -3.69 10.04 22.25 0.22 -3.46 16 24 C -0.14 -5.81 9.22 22.41 0.21 -5.60 16 25 C -0.13 -4.53 5.15 31.89 0.16 -4.37 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.10 2.40 7.69 -2.38 -0.02 2.38 16 31 H 0.28 14.14 8.31 -92.70 -0.77 13.37 16 32 H 0.10 4.64 7.64 -2.91 -0.02 4.62 16 33 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 34 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 35 H 0.16 4.01 8.06 -2.91 -0.02 3.99 16 36 H 0.12 5.16 8.04 -2.91 -0.02 5.14 16 37 H 0.10 3.58 5.78 -2.39 -0.01 3.56 16 38 H 0.06 2.30 7.78 -2.39 -0.02 2.28 16 Total: -1.00 -66.68 306.98 4.95 -61.72 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.97 Total: 23.93 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 4.28 Total: -11.65 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -0.77 Total: -68.84 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -1.17 Total: -49.72 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.65 Total: 44.57 kcal Total: -66.68 4.95 -61.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888563966.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.342 kcal (2) G-P(sol) polarization free energy of solvation -66.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds