Wall clock time and date at job start Mon Mar 30 2020 02:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.47272 * 2 1 4 4 C 1.53004 * 109.46719 * 119.99866 * 2 1 3 5 5 C 1.50700 * 109.46918 * 294.99568 * 4 2 1 6 6 H 1.08001 * 120.00679 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99857 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00265 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00014 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47225 * 89.99511 * 9 7 5 11 11 H 1.48493 * 109.47125 * 209.99955 * 9 7 5 12 12 H 1.48504 * 109.46833 * 329.99994 * 9 7 5 13 13 C 1.52997 * 109.47182 * 239.99676 * 2 1 3 14 14 N 1.46901 * 109.47090 * 65.00134 * 13 2 1 15 15 C 1.46901 * 110.99958 * 180.02562 * 14 13 2 16 16 H 1.09002 * 109.65123 * 34.29757 * 15 14 13 17 17 C 1.55094 * 109.65066 * 273.85059 * 15 14 13 18 18 S 1.83841 * 101.19046 * 198.41085 * 17 15 14 19 19 O 1.42100 * 109.61391 * 148.95296 * 18 17 15 20 20 O 1.42106 * 109.61476 * 282.72117 * 18 17 15 21 21 C 1.83235 * 95.32165 * 35.92772 * 18 17 15 22 22 C 1.52971 * 109.54957 * 154.68071 * 15 14 13 23 23 H 1.09001 * 108.93370 * 270.44168 * 22 15 14 24 24 C 1.53001 * 108.93491 * 28.97298 * 22 15 14 25 25 H 1.08994 * 109.47272 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47118 * 300.00387 * 1 2 3 27 27 H 1.08997 * 109.46602 * 60.00356 * 1 2 3 28 28 H 1.08995 * 109.47113 * 54.99792 * 4 2 1 29 29 H 1.09003 * 109.46930 * 175.00176 * 4 2 1 30 30 H 0.97001 * 119.99847 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.46830 * 305.00505 * 13 2 1 32 32 H 1.08998 * 109.47427 * 185.00000 * 13 2 1 33 33 H 1.00901 * 110.99762 * 56.04450 * 14 13 2 34 34 H 1.08998 * 111.08168 * 316.39673 * 17 15 14 35 35 H 1.09008 * 111.07784 * 80.39124 * 17 15 14 36 36 H 1.09003 * 110.26771 * 98.65950 * 21 18 17 37 37 H 1.08998 * 110.27031 * 220.63436 * 21 18 17 38 38 H 1.08996 * 109.46834 * 59.99779 * 24 22 15 39 39 H 1.08998 * 109.46887 * 179.97438 * 24 22 15 40 40 H 1.09000 * 109.46536 * 300.00021 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9743 2.3757 7 6 1.9932 -0.4015 3.7283 8 7 1.6449 0.2775 4.7994 9 14 2.9646 -1.9875 3.9029 10 1 4.4179 -1.6831 3.8785 11 1 2.6174 -2.6415 5.1900 12 1 2.6309 -2.8987 2.7787 13 6 2.0401 -0.7213 -1.2492 14 7 1.6515 0.0373 -2.4456 15 6 2.1249 -0.6273 -3.6671 16 1 2.0938 -1.7084 -3.5318 17 6 3.5784 -0.1815 -3.9736 18 16 3.7270 -0.6438 -5.7468 19 8 4.6128 0.2541 -6.4012 20 8 3.9238 -2.0467 -5.8591 21 6 1.9962 -0.2240 -6.1775 22 6 1.2325 -0.2304 -4.8445 23 1 0.4048 -0.9361 -4.9146 24 6 0.6673 1.1684 -4.5896 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.6053 -1.7197 1.2952 29 1 3.1263 -0.7995 1.2057 30 1 1.8921 -0.0455 5.6801 31 1 1.6054 -1.7199 -1.2950 32 1 3.1264 -0.7995 -1.2056 33 1 1.9883 0.9872 -2.3966 34 1 3.6957 0.8936 -3.8376 35 1 4.2943 -0.7319 -3.3630 36 1 1.9500 0.7646 -6.6344 37 1 1.5834 -0.9719 -6.8544 38 1 1.4875 1.8796 -4.4931 39 1 0.0299 1.4603 -5.4242 40 1 0.0821 1.1616 -3.6700 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895797249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:15 Heat of formation + Delta-G solvation = -82.481570 kcal Electronic energy + Delta-G solvation = -19883.592037 eV Core-core repulsion = 16825.152456 eV Total energy + Delta-G solvation = -3058.439581 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.89497 -37.30719 -36.30503 -36.01262 -33.26712 -31.90124 -29.81707 -27.96073 -27.29256 -25.42957 -24.06059 -22.13406 -20.12715 -19.23566 -19.09937 -17.23600 -16.77488 -16.54821 -16.26592 -15.55657 -15.02469 -14.67253 -14.32755 -14.18903 -13.67280 -13.54046 -13.18378 -12.76105 -12.53097 -12.42510 -12.35244 -12.31198 -12.14353 -11.80431 -11.76635 -11.46577 -11.05419 -10.99157 -10.93839 -10.81302 -10.57252 -10.44099 -9.97864 -9.71554 -9.49211 -9.11233 -8.54915 -8.41822 -6.05356 -4.02698 -0.25516 2.18564 3.27922 3.28587 3.36801 3.39645 3.63064 3.83065 4.17146 4.37395 4.43675 4.43910 4.55507 4.58637 5.03804 5.21944 5.25002 5.27963 5.33543 5.40319 5.48690 5.63479 5.73227 5.88298 5.92877 6.15151 6.22020 6.31837 6.49036 6.75224 6.93580 7.00311 7.10934 7.21735 7.33850 7.43721 7.78743 8.53229 9.00026 9.57449 11.08004 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029762 B = 0.003822 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.565970 B = 7324.352131 C = 7889.750389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 H 0.060 0.940 4 C -0.009 4.009 5 C -0.514 4.514 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.904 5.904 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.055 3.945 14 N -0.663 5.663 15 C 0.091 3.909 16 H 0.101 0.899 17 C -0.616 4.616 18 S 2.382 3.618 19 O -0.943 6.943 20 O -0.935 6.935 21 C -0.581 4.581 22 C -0.076 4.076 23 H 0.097 0.903 24 C -0.146 4.146 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.016 0.984 29 H 0.008 0.992 30 H 0.262 0.738 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.347 0.653 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.111 -0.495 -22.149 22.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.047 4.047 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.191 1.191 13 C -0.073 4.073 14 N -0.294 5.294 15 C -0.022 4.022 16 H 0.119 0.881 17 C -0.747 4.747 18 S 2.566 3.434 19 O -0.939 6.939 20 O -0.932 6.932 21 C -0.712 4.712 22 C -0.096 4.096 23 H 0.115 0.885 24 C -0.204 4.204 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.166 0.834 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.041 -1.140 -22.531 22.559 hybrid contribution 0.934 -0.333 0.786 1.266 sum 0.976 -1.473 -21.744 21.816 Atomic orbital electron populations 1.21608 0.95162 1.00726 1.00737 1.21012 0.96426 0.99034 0.92801 0.92147 1.19615 0.95379 0.96283 0.93452 1.21114 1.35454 1.09558 0.89085 0.90833 1.25029 0.95677 0.96871 0.95963 1.69912 1.47117 1.39290 0.98037 0.86813 0.80585 0.84508 0.77538 1.20445 1.21437 1.19084 1.22322 0.97618 0.97913 0.89465 1.60591 1.62551 1.05927 1.00284 1.22169 0.86742 1.00617 0.92643 0.88053 1.31326 1.07071 1.11966 1.24364 1.09243 0.78807 0.75784 0.79602 1.93607 1.61627 1.66117 1.72595 1.93637 1.84952 1.29159 1.85412 1.30456 1.22217 1.12456 1.06030 1.21131 0.98679 1.01338 0.88417 0.88509 1.21884 1.01299 0.93923 1.03279 0.94145 0.92181 0.93698 0.96560 0.97396 0.92791 0.91126 0.95288 0.83367 0.84288 0.84432 0.84350 0.84700 0.92924 0.92806 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.89 37.16 0.33 -1.86 16 2 C -0.07 -1.33 2.48 -90.61 -0.22 -1.55 16 3 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 5 C -0.51 -14.14 8.96 -34.44 -0.31 -14.45 16 6 H 0.07 2.17 7.30 -52.49 -0.38 1.79 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 9 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 13 C 0.06 0.78 4.88 -3.83 -0.02 0.76 16 14 N -0.66 -7.11 4.13 -105.57 -0.44 -7.55 16 15 C 0.09 0.79 2.65 -66.62 -0.18 0.61 16 16 H 0.10 0.89 7.80 -51.93 -0.40 0.48 16 17 C -0.62 -4.72 6.82 38.26 0.26 -4.46 16 18 S 2.38 19.95 6.05 -107.50 -0.65 19.30 16 19 O -0.94 -11.20 18.16 -57.69 -1.05 -12.24 16 20 O -0.93 -11.24 18.16 -57.69 -1.05 -12.29 16 21 C -0.58 -3.31 6.94 37.48 0.26 -3.05 16 22 C -0.08 -0.53 3.14 -90.31 -0.28 -0.81 16 23 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 24 C -0.15 -1.03 7.84 37.16 0.29 -0.74 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.20 6.95 -51.93 -0.36 0.84 16 27 H 0.04 0.68 7.75 -51.93 -0.40 0.27 16 28 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 29 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.07 1.00 8.06 -51.93 -0.42 0.59 16 32 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.35 3.44 7.72 -39.29 -0.30 3.14 16 34 H 0.14 0.88 7.90 -51.93 -0.41 0.47 16 35 H 0.14 1.05 8.14 -51.92 -0.42 0.62 16 36 H 0.14 0.61 7.63 -51.93 -0.40 0.22 16 37 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.33 8.09 -51.93 -0.42 -0.09 16 39 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.74 7.17 -51.93 -0.37 0.37 16 LS Contribution 326.64 15.07 4.92 4.92 Total: -1.00 -34.86 326.64 -8.98 -43.84 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -6.76 Total: -1.94 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -0.06 Total: -24.08 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.34 Total: -34.33 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -2.10 Total: -24.53 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: 19.95 SS G_CDS: -0.65 Total: 19.30 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.86 -8.98 -43.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895797249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.637 kcal (2) G-P(sol) polarization free energy of solvation -34.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds