Wall clock time and date at job start Mon Mar 30 2020 02:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.47272 * 2 1 4 4 C 1.53004 * 109.46719 * 119.99866 * 2 1 3 5 5 C 1.50700 * 109.46918 * 294.99568 * 4 2 1 6 6 H 1.08001 * 120.00679 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99857 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00265 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00014 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47225 * 89.99511 * 9 7 5 11 11 H 1.48493 * 109.47125 * 209.99955 * 9 7 5 12 12 H 1.48504 * 109.46833 * 329.99994 * 9 7 5 13 13 C 1.52997 * 109.47182 * 239.99676 * 2 1 3 14 14 N 1.46901 * 109.47090 * 65.00134 * 13 2 1 15 15 C 1.46901 * 110.99958 * 180.02562 * 14 13 2 16 16 H 1.09002 * 109.65123 * 34.29757 * 15 14 13 17 17 C 1.55094 * 109.65066 * 273.85059 * 15 14 13 18 18 S 1.83841 * 101.19046 * 198.41085 * 17 15 14 19 19 O 1.42100 * 109.61391 * 148.95296 * 18 17 15 20 20 O 1.42106 * 109.61476 * 282.72117 * 18 17 15 21 21 C 1.83235 * 95.32165 * 35.92772 * 18 17 15 22 22 C 1.52971 * 109.54957 * 154.68071 * 15 14 13 23 23 H 1.09001 * 108.93370 * 270.44168 * 22 15 14 24 24 C 1.53001 * 108.93491 * 28.97298 * 22 15 14 25 25 H 1.08994 * 109.47272 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47118 * 300.00387 * 1 2 3 27 27 H 1.08997 * 109.46602 * 60.00356 * 1 2 3 28 28 H 1.08995 * 109.47113 * 54.99792 * 4 2 1 29 29 H 1.09003 * 109.46930 * 175.00176 * 4 2 1 30 30 H 0.97001 * 119.99847 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.46830 * 305.00505 * 13 2 1 32 32 H 1.08998 * 109.47427 * 185.00000 * 13 2 1 33 33 H 1.00901 * 110.99762 * 56.04450 * 14 13 2 34 34 H 1.08998 * 111.08168 * 316.39673 * 17 15 14 35 35 H 1.09008 * 111.07784 * 80.39124 * 17 15 14 36 36 H 1.09003 * 110.26771 * 98.65950 * 21 18 17 37 37 H 1.08998 * 110.27031 * 220.63436 * 21 18 17 38 38 H 1.08996 * 109.46834 * 59.99779 * 24 22 15 39 39 H 1.08998 * 109.46887 * 179.97438 * 24 22 15 40 40 H 1.09000 * 109.46536 * 300.00021 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9743 2.3757 7 6 1.9932 -0.4015 3.7283 8 7 1.6449 0.2775 4.7994 9 14 2.9646 -1.9875 3.9029 10 1 4.4179 -1.6831 3.8785 11 1 2.6174 -2.6415 5.1900 12 1 2.6309 -2.8987 2.7787 13 6 2.0401 -0.7213 -1.2492 14 7 1.6515 0.0373 -2.4456 15 6 2.1249 -0.6273 -3.6671 16 1 2.0938 -1.7084 -3.5318 17 6 3.5784 -0.1815 -3.9736 18 16 3.7270 -0.6438 -5.7468 19 8 4.6128 0.2541 -6.4012 20 8 3.9238 -2.0467 -5.8591 21 6 1.9962 -0.2240 -6.1775 22 6 1.2325 -0.2304 -4.8445 23 1 0.4048 -0.9361 -4.9146 24 6 0.6673 1.1684 -4.5896 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.6053 -1.7197 1.2952 29 1 3.1263 -0.7995 1.2057 30 1 1.8921 -0.0455 5.6801 31 1 1.6054 -1.7199 -1.2950 32 1 3.1264 -0.7995 -1.2056 33 1 1.9883 0.9872 -2.3966 34 1 3.6957 0.8936 -3.8376 35 1 4.2943 -0.7319 -3.3630 36 1 1.9500 0.7646 -6.6344 37 1 1.5834 -0.9719 -6.8544 38 1 1.4875 1.8796 -4.4931 39 1 0.0299 1.4603 -5.4242 40 1 0.0821 1.1616 -3.6700 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895797249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:14 Heat of formation + Delta-G solvation = -108.695751 kcal Electronic energy + Delta-G solvation = -19884.728769 eV Core-core repulsion = 16825.152456 eV Total energy + Delta-G solvation = -3059.576313 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.66323 -38.09899 -37.36317 -37.03382 -34.80655 -33.40980 -30.67443 -29.24469 -28.34239 -26.57232 -24.96870 -23.71289 -21.04001 -20.39060 -19.84261 -18.95063 -17.79387 -17.31404 -17.02253 -16.43640 -16.25197 -15.81704 -15.51415 -15.35402 -14.95495 -14.43079 -14.29486 -13.90538 -13.64909 -13.48816 -13.26947 -13.20507 -13.11421 -12.97445 -12.82441 -12.69566 -12.45148 -12.15590 -11.96943 -11.79452 -11.68089 -11.55354 -11.45226 -11.20483 -11.12575 -10.97645 -10.72650 -9.29337 -8.25488 -6.27401 -0.89491 1.35664 1.37851 1.48944 1.58047 2.37732 2.64797 3.00417 3.07769 3.10319 3.52461 3.80540 3.85062 3.95087 4.00970 4.17015 4.34156 4.48234 4.52906 4.70005 4.75013 4.81387 4.86153 4.93482 4.97116 4.99527 5.14299 5.22547 5.35258 5.43025 5.46168 5.58771 5.65223 5.75370 5.75679 6.04305 6.35654 6.48709 6.80962 7.36346 8.91251 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029762 B = 0.003822 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.565970 B = 7324.352131 C = 7889.750389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.070 4.070 3 H 0.052 0.948 4 C -0.009 4.009 5 C -0.517 4.517 6 H 0.036 0.964 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.946 3.054 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.247 1.247 13 C 0.067 3.933 14 N -0.660 5.660 15 C 0.087 3.913 16 H 0.102 0.898 17 C -0.611 4.611 18 S 2.389 3.611 19 O -0.982 6.982 20 O -0.976 6.976 21 C -0.555 4.555 22 C -0.073 4.073 23 H 0.106 0.894 24 C -0.150 4.150 25 H 0.042 0.958 26 H 0.023 0.977 27 H 0.072 0.928 28 H 0.017 0.983 29 H 0.013 0.987 30 H 0.264 0.736 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.353 0.647 34 H 0.155 0.845 35 H 0.138 0.862 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.115 -1.390 -24.312 24.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.089 4.089 3 H 0.071 0.929 4 C -0.047 4.047 5 C -0.555 4.555 6 H 0.054 0.946 7 C -0.195 4.195 8 N -0.596 5.596 9 Si 0.770 3.230 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.170 1.170 13 C -0.062 4.062 14 N -0.291 5.291 15 C -0.026 4.026 16 H 0.120 0.880 17 C -0.743 4.743 18 S 2.577 3.423 19 O -0.979 6.979 20 O -0.973 6.973 21 C -0.688 4.688 22 C -0.093 4.093 23 H 0.124 0.876 24 C -0.207 4.207 25 H 0.061 0.939 26 H 0.042 0.958 27 H 0.091 0.909 28 H 0.035 0.965 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.173 0.827 34 H 0.173 0.827 35 H 0.156 0.844 36 H 0.177 0.823 37 H 0.174 0.826 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.068 -2.042 -24.730 24.814 hybrid contribution 0.829 0.062 1.458 1.679 sum 0.898 -1.980 -23.272 23.373 Atomic orbital electron populations 1.21514 0.94959 1.00665 1.00250 1.20879 0.96532 0.98547 0.92922 0.92906 1.19593 0.95682 0.95948 0.93497 1.21476 1.34143 1.08634 0.91243 0.94617 1.25984 0.97103 1.00762 0.95627 1.70073 1.49212 1.41599 0.98710 0.85725 0.79146 0.80149 0.77996 1.19478 1.21376 1.17009 1.22034 0.97618 0.97675 0.88906 1.60516 1.62718 1.06047 0.99819 1.22268 0.87441 1.00606 0.92265 0.88009 1.31285 1.06584 1.13019 1.23411 1.08838 0.79781 0.74249 0.79456 1.93554 1.64148 1.66580 1.73631 1.93580 1.86261 1.31414 1.86070 1.30319 1.18167 1.14333 1.06007 1.21121 0.98545 1.01647 0.88030 0.87610 1.21915 1.01654 0.94035 1.03133 0.93933 0.95800 0.90947 0.96466 0.96832 0.92754 0.90851 0.94926 0.82695 0.82740 0.84397 0.82273 0.82552 0.92169 0.91578 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.00 8.89 71.99 0.64 -3.36 16 2 C -0.07 -2.43 2.48 -10.79 -0.03 -2.46 16 3 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 4 C -0.01 -0.41 3.52 29.85 0.10 -0.31 16 5 C -0.52 -29.01 8.96 25.60 0.23 -28.78 16 6 H 0.04 2.21 7.30 -2.91 -0.02 2.19 16 7 C 0.00 0.07 5.47 84.65 0.46 0.54 16 8 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 9 Si 0.95 44.05 27.47 68.60 1.88 45.93 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.25 -10.61 6.54 99.48 0.65 -9.96 16 13 C 0.07 1.71 4.88 86.30 0.42 2.13 16 14 N -0.66 -12.32 4.13 -487.91 -2.01 -14.33 16 15 C 0.09 1.24 2.65 45.62 0.12 1.36 16 16 H 0.10 1.50 7.80 -2.39 -0.02 1.48 16 17 C -0.61 -7.94 6.82 72.70 0.50 -7.45 16 18 S 2.39 36.01 6.05 -56.49 -0.34 35.66 16 19 O -0.98 -22.34 18.16 -127.50 -2.32 -24.65 16 20 O -0.98 -22.56 18.16 -127.50 -2.32 -24.88 16 21 C -0.56 -4.30 6.94 72.19 0.50 -3.80 16 22 C -0.07 -0.75 3.14 -10.59 -0.03 -0.79 16 23 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 24 C -0.15 -1.58 7.84 71.98 0.56 -1.02 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.02 0.96 6.95 -2.39 -0.02 0.94 16 27 H 0.07 2.06 7.75 -2.39 -0.02 2.04 16 28 H 0.02 0.76 7.20 -2.39 -0.02 0.74 16 29 H 0.01 0.58 7.57 -2.39 -0.02 0.57 16 30 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 31 H 0.07 1.87 8.06 -2.38 -0.02 1.86 16 32 H 0.03 0.82 8.08 -2.39 -0.02 0.80 16 33 H 0.35 6.02 7.72 -89.69 -0.69 5.32 16 34 H 0.15 1.53 7.90 -2.39 -0.02 1.51 16 35 H 0.14 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.16 0.71 7.63 -2.39 -0.02 0.69 16 37 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.06 0.54 8.09 -2.39 -0.02 0.52 16 39 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.07 1.02 7.17 -2.39 -0.02 1.01 16 Total: -1.00 -76.91 326.64 -1.06 -77.97 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.26 Total: 7.72 kcal Atomic # 6 Polarization: -47.41 SS G_CDS: 3.48 Total: -43.93 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -1.71 Total: -73.83 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -4.63 Total: -49.53 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Atomic # 16 Polarization: 36.01 SS G_CDS: -0.34 Total: 35.66 kcal Total: -76.91 -1.06 -77.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895797249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.724 kcal (2) G-P(sol) polarization free energy of solvation -76.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds