Wall clock time and date at job start Mon Mar 30 2020 02:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.83039 * 2 1 4 4 C 1.55224 * 111.02247 * 123.70746 * 2 1 3 5 5 O 1.44387 * 103.56404 * 155.07234 * 4 2 1 6 6 C 1.43747 * 106.97369 * 320.01164 * 5 4 2 7 7 C 1.54097 * 107.29551 * 26.51495 * 6 5 4 8 8 H 1.09001 * 110.48655 * 239.16267 * 7 6 5 9 9 N 1.46504 * 110.49055 * 116.64356 * 7 6 5 10 10 C 1.34776 * 119.99553 * 88.24021 * 9 7 6 11 11 O 1.21604 * 120.00526 * 0.02562 * 10 9 7 12 12 C 1.47434 * 119.99593 * 179.97438 * 10 9 7 13 13 C 1.39226 * 120.28341 * 355.61363 * 12 10 9 14 14 C 1.38216 * 120.09439 * 180.25247 * 13 12 10 15 15 C 1.38831 * 120.67398 * 359.44169 * 14 13 12 16 16 C 1.37597 * 120.56771 * 0.55973 * 15 14 13 17 17 C 1.40704 * 119.88294 * 359.72581 * 16 15 14 18 18 C 1.40892 * 120.32989 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00076 * 215.52318 * 18 17 16 20 20 C 1.40278 * 120.00139 * 35.51562 * 18 17 16 21 21 N 1.30625 * 119.99656 * 9.13185 * 20 18 17 22 22 Si 1.86801 * 120.00022 * 189.13234 * 20 18 17 23 23 H 1.48499 * 109.47068 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47063 * 120.00181 * 22 20 18 25 25 H 1.48504 * 109.46878 * 240.00221 * 22 20 18 26 26 H 1.09001 * 109.47075 * 183.64834 * 1 2 3 27 27 H 1.09000 * 109.46936 * 303.64317 * 1 2 3 28 28 H 1.08996 * 109.47033 * 63.65039 * 1 2 3 29 29 H 1.09000 * 110.52019 * 36.58134 * 4 2 1 30 30 H 1.09000 * 110.77802 * 273.69305 * 4 2 1 31 31 H 1.08995 * 109.87639 * 267.08668 * 6 5 4 32 32 H 1.08998 * 110.00045 * 146.00858 * 6 5 4 33 33 H 0.96995 * 119.99549 * 268.24672 * 9 7 6 34 34 H 1.07998 * 119.95309 * 359.97438 * 13 12 10 35 35 H 1.08001 * 119.66639 * 179.70528 * 14 13 12 36 36 H 1.08002 * 119.71778 * 180.28718 * 15 14 13 37 37 H 1.08001 * 120.05925 * 179.74723 * 16 15 14 38 38 H 0.97001 * 119.99963 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9177 1.0188 0.0000 4 6 2.0869 -0.8041 1.2053 5 8 3.3965 -1.2182 0.7601 6 6 3.2713 -1.5908 -0.6225 7 6 2.0825 -0.8013 -1.2039 8 1 1.3238 -1.4827 -1.5891 9 7 2.5373 0.1073 -2.2593 10 6 2.6119 -0.3242 -3.5340 11 8 2.3013 -1.4675 -3.8081 12 6 3.0691 0.5904 -4.5962 13 6 3.3379 1.9252 -4.3057 14 6 3.7613 2.7804 -5.3055 15 6 3.9348 2.3209 -6.6041 16 6 3.6771 1.0072 -6.9218 17 6 3.2393 0.1174 -5.9236 18 6 2.9732 -1.2299 -6.2384 19 1 2.1649 -1.7499 -5.7460 20 6 3.7580 -1.8957 -7.1915 21 7 4.8406 -1.3310 -7.6558 22 14 3.2551 -3.5899 -7.7968 23 1 1.9993 -4.0042 -7.1211 24 1 3.0355 -3.5460 -9.2648 25 1 4.3303 -4.5659 -7.4860 26 1 -0.3633 -1.0256 0.0654 27 1 -0.3633 0.5694 0.8555 28 1 -0.3633 0.4561 -0.9209 29 1 1.4588 -1.6713 1.4090 30 1 2.1643 -0.1714 2.0896 31 1 3.0800 -2.6609 -0.7021 32 1 4.1841 -1.3365 -1.1613 33 1 2.7848 1.0193 -2.0406 34 1 3.2112 2.2940 -3.2985 35 1 3.9634 3.8156 -5.0735 36 1 4.2707 3.0016 -7.3724 37 1 3.8109 0.6595 -7.9356 38 1 5.3831 -1.7912 -8.3151 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928883123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:16 Heat of formation + Delta-G solvation = -66.777907 kcal Electronic energy + Delta-G solvation = -21243.637658 eV Core-core repulsion = 18050.435088 eV Total energy + Delta-G solvation = -3193.202570 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.92063 -38.47535 -36.70019 -34.35731 -33.67615 -32.49223 -30.13138 -29.68247 -28.09294 -26.29079 -25.39472 -23.04623 -21.77211 -21.01971 -20.44584 -19.28196 -17.58305 -16.66783 -16.35691 -15.67609 -15.35950 -15.19796 -14.58803 -14.21754 -13.81102 -13.71412 -13.34481 -13.08427 -13.03662 -12.72847 -12.42862 -12.05323 -11.81054 -11.64741 -11.29075 -11.15509 -11.06122 -10.92582 -10.81787 -10.64479 -10.52767 -10.10368 -9.70680 -9.68135 -9.29078 -8.47101 -8.36289 -7.61442 -7.35882 -6.81560 -4.41293 2.32356 2.78594 3.10024 3.19187 3.20894 3.78740 3.96942 3.98517 4.11332 4.47696 4.66942 4.77526 4.95056 5.13128 5.34704 5.36598 5.53010 5.60414 5.64043 5.69982 5.83974 5.95148 5.96537 6.04609 6.10056 6.22179 6.27187 6.58067 6.88066 6.93019 7.05109 7.12694 7.21968 7.44061 7.59686 7.86118 7.96837 8.16021 8.33427 8.66130 8.81390 8.88656 9.36531 10.14441 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017731 B = 0.005709 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.753841 B = 4903.507594 C = 5928.961791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.134 4.134 3 H 0.089 0.911 4 C 0.051 3.949 5 O -0.380 6.380 6 C 0.034 3.966 7 C 0.124 3.876 8 H 0.100 0.900 9 N -0.739 5.739 10 C 0.565 3.435 11 O -0.538 6.538 12 C -0.262 4.262 13 C -0.057 4.057 14 C -0.244 4.244 15 C -0.096 4.096 16 C -0.146 4.146 17 C 0.147 3.853 18 C -0.421 4.421 19 H 0.111 0.889 20 C 0.069 3.931 21 N -0.793 5.793 22 Si 0.915 3.085 23 H -0.257 1.257 24 H -0.273 1.273 25 H -0.274 1.274 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.393 0.607 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.949 2.462 10.637 11.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 H 0.107 0.893 4 C -0.026 4.026 5 O -0.299 6.299 6 C -0.044 4.044 7 C 0.017 3.983 8 H 0.117 0.883 9 N -0.394 5.394 10 C 0.360 3.640 11 O -0.416 6.416 12 C -0.267 4.267 13 C -0.076 4.076 14 C -0.263 4.263 15 C -0.115 4.115 16 C -0.165 4.165 17 C 0.143 3.857 18 C -0.449 4.449 19 H 0.128 0.872 20 C -0.150 4.150 21 N -0.418 5.418 22 Si 0.740 3.260 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.199 1.199 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.228 0.772 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.134 0.866 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.788 1.554 10.385 11.541 hybrid contribution 0.059 -0.166 -0.334 0.377 sum -4.729 1.388 10.052 11.195 Atomic orbital electron populations 1.21696 0.93400 1.02292 1.02363 1.23026 0.97065 1.00467 0.94746 0.89263 1.23615 0.84706 0.97475 0.96763 1.88870 1.28791 1.86426 1.25783 1.23745 1.00153 0.98847 0.81649 1.22173 0.95933 0.92382 0.87799 0.88251 1.46071 1.71193 1.14961 1.07173 1.18458 0.76768 0.87502 0.81291 1.90653 1.49447 1.19727 1.81823 1.19433 1.20010 0.93648 0.93584 1.20648 0.97233 0.93120 0.96591 1.20290 1.13754 0.98103 0.94187 1.20806 0.99383 0.95828 0.95454 1.21342 1.03969 0.91742 0.99456 1.17492 0.86375 0.93291 0.88587 1.20336 1.13266 0.95960 1.15366 0.87159 1.26152 0.93990 1.00732 0.94082 1.69723 1.10671 1.38527 1.22898 0.86125 0.80219 0.81086 0.78592 1.17997 1.19866 1.19922 0.92227 0.92260 0.91786 0.92056 0.89025 0.91812 0.89104 0.77165 0.89284 0.89078 0.89055 0.86644 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.20 37.16 0.34 -1.02 16 2 C -0.13 -1.52 3.45 -88.48 -0.31 -1.82 16 3 H 0.09 0.97 7.76 -51.93 -0.40 0.57 16 4 C 0.05 0.56 7.19 38.34 0.28 0.84 16 5 O -0.38 -5.56 11.52 -35.23 -0.41 -5.96 16 6 C 0.03 0.53 7.50 37.73 0.28 0.81 16 7 C 0.12 1.86 2.95 -66.40 -0.20 1.67 16 8 H 0.10 1.63 7.32 -51.93 -0.38 1.25 16 9 N -0.74 -12.87 4.99 -53.39 -0.27 -13.14 16 10 C 0.57 12.78 7.72 -12.52 -0.10 12.69 16 11 O -0.54 -13.77 13.20 5.27 0.07 -13.70 16 12 C -0.26 -6.31 5.92 -104.37 -0.62 -6.93 16 13 C -0.06 -1.20 9.52 -39.22 -0.37 -1.58 16 14 C -0.24 -5.14 10.03 -39.37 -0.39 -5.53 16 15 C -0.10 -2.14 10.01 -39.60 -0.40 -2.54 16 16 C -0.15 -3.68 8.62 -38.88 -0.34 -4.01 16 17 C 0.15 3.90 5.49 -106.54 -0.58 3.32 16 18 C -0.42 -11.48 7.77 -37.81 -0.29 -11.78 16 19 H 0.11 3.12 5.74 -52.49 -0.30 2.82 16 20 C 0.07 1.76 5.25 -17.30 -0.09 1.67 16 21 N -0.79 -20.52 11.24 55.56 0.62 -19.89 16 22 Si 0.92 19.58 29.57 -169.99 -5.03 14.56 16 23 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.60 8.01 -51.93 -0.42 0.18 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.56 7.93 -51.93 -0.41 1.15 16 33 H 0.39 6.03 6.42 -40.82 -0.26 5.77 16 34 H 0.09 1.54 6.42 -52.49 -0.34 1.21 16 35 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 37 H 0.12 2.97 6.70 -52.49 -0.35 2.62 16 38 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16 LS Contribution 313.84 15.07 4.73 4.73 Total: -1.00 -29.55 313.84 -8.01 -37.57 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -4.95 Total: 10.06 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -2.78 Total: -14.22 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.36 Total: -33.03 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.34 Total: -19.66 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.55 -8.01 -37.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928883123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.211 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds