Wall clock time and date at job start Mon Mar 30 2020 02:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.83039 * 2 1 4 4 C 1.55224 * 111.02247 * 123.70746 * 2 1 3 5 5 O 1.44387 * 103.56404 * 155.07234 * 4 2 1 6 6 C 1.43747 * 106.97369 * 320.01164 * 5 4 2 7 7 C 1.54097 * 107.29551 * 26.51495 * 6 5 4 8 8 H 1.09001 * 110.48655 * 239.16267 * 7 6 5 9 9 N 1.46504 * 110.49055 * 116.64356 * 7 6 5 10 10 C 1.34776 * 119.99553 * 88.24021 * 9 7 6 11 11 O 1.21604 * 120.00526 * 0.02562 * 10 9 7 12 12 C 1.47434 * 119.99593 * 179.97438 * 10 9 7 13 13 C 1.39226 * 120.28341 * 355.61363 * 12 10 9 14 14 C 1.38216 * 120.09439 * 180.25247 * 13 12 10 15 15 C 1.38831 * 120.67398 * 359.44169 * 14 13 12 16 16 C 1.37597 * 120.56771 * 0.55973 * 15 14 13 17 17 C 1.40704 * 119.88294 * 359.72581 * 16 15 14 18 18 C 1.40892 * 120.32989 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00076 * 215.52318 * 18 17 16 20 20 C 1.40278 * 120.00139 * 35.51562 * 18 17 16 21 21 N 1.30625 * 119.99656 * 9.13185 * 20 18 17 22 22 Si 1.86801 * 120.00022 * 189.13234 * 20 18 17 23 23 H 1.48499 * 109.47068 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47063 * 120.00181 * 22 20 18 25 25 H 1.48504 * 109.46878 * 240.00221 * 22 20 18 26 26 H 1.09001 * 109.47075 * 183.64834 * 1 2 3 27 27 H 1.09000 * 109.46936 * 303.64317 * 1 2 3 28 28 H 1.08996 * 109.47033 * 63.65039 * 1 2 3 29 29 H 1.09000 * 110.52019 * 36.58134 * 4 2 1 30 30 H 1.09000 * 110.77802 * 273.69305 * 4 2 1 31 31 H 1.08995 * 109.87639 * 267.08668 * 6 5 4 32 32 H 1.08998 * 110.00045 * 146.00858 * 6 5 4 33 33 H 0.96995 * 119.99549 * 268.24672 * 9 7 6 34 34 H 1.07998 * 119.95309 * 359.97438 * 13 12 10 35 35 H 1.08001 * 119.66639 * 179.70528 * 14 13 12 36 36 H 1.08002 * 119.71778 * 180.28718 * 15 14 13 37 37 H 1.08001 * 120.05925 * 179.74723 * 16 15 14 38 38 H 0.97001 * 119.99963 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9177 1.0188 0.0000 4 6 2.0869 -0.8041 1.2053 5 8 3.3965 -1.2182 0.7601 6 6 3.2713 -1.5908 -0.6225 7 6 2.0825 -0.8013 -1.2039 8 1 1.3238 -1.4827 -1.5891 9 7 2.5373 0.1073 -2.2593 10 6 2.6119 -0.3242 -3.5340 11 8 2.3013 -1.4675 -3.8081 12 6 3.0691 0.5904 -4.5962 13 6 3.3379 1.9252 -4.3057 14 6 3.7613 2.7804 -5.3055 15 6 3.9348 2.3209 -6.6041 16 6 3.6771 1.0072 -6.9218 17 6 3.2393 0.1174 -5.9236 18 6 2.9732 -1.2299 -6.2384 19 1 2.1649 -1.7499 -5.7460 20 6 3.7580 -1.8957 -7.1915 21 7 4.8406 -1.3310 -7.6558 22 14 3.2551 -3.5899 -7.7968 23 1 1.9993 -4.0042 -7.1211 24 1 3.0355 -3.5460 -9.2648 25 1 4.3303 -4.5659 -7.4860 26 1 -0.3633 -1.0256 0.0654 27 1 -0.3633 0.5694 0.8555 28 1 -0.3633 0.4561 -0.9209 29 1 1.4588 -1.6713 1.4090 30 1 2.1643 -0.1714 2.0896 31 1 3.0800 -2.6609 -0.7021 32 1 4.1841 -1.3365 -1.1613 33 1 2.7848 1.0193 -2.0406 34 1 3.2112 2.2940 -3.2985 35 1 3.9634 3.8156 -5.0735 36 1 4.2707 3.0016 -7.3724 37 1 3.8109 0.6595 -7.9356 38 1 5.3831 -1.7912 -8.3151 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928883123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:16 Heat of formation + Delta-G solvation = -85.691945 kcal Electronic energy + Delta-G solvation = -21244.457832 eV Core-core repulsion = 18050.435088 eV Total energy + Delta-G solvation = -3194.022745 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.25947 -40.02724 -38.45158 -35.88604 -35.36826 -33.71692 -31.87367 -31.44149 -29.47440 -27.34509 -27.06927 -24.57670 -23.23799 -22.62948 -21.74147 -20.89324 -19.38877 -18.07902 -17.80712 -17.10082 -16.88969 -16.50700 -16.03856 -15.88951 -15.37129 -15.22486 -15.01225 -14.50680 -14.18324 -14.12830 -13.92655 -13.47385 -13.26034 -12.90948 -12.87500 -12.85700 -12.43026 -12.38107 -12.28768 -11.97796 -11.86939 -11.77187 -11.47082 -11.14845 -10.82234 -10.25229 -9.93634 -9.40310 -9.21732 -8.68342 -6.37599 0.50386 1.00465 1.32968 1.46703 1.48911 2.20658 2.30712 2.37341 2.78563 2.94696 3.42727 3.69901 3.80849 3.92050 4.05706 4.26249 4.31179 4.36921 4.47563 4.57853 4.68642 4.72838 4.75219 4.83516 4.93327 4.97786 5.08819 5.12375 5.24521 5.30837 5.33761 5.61352 5.66370 5.80245 5.81981 6.05490 6.11038 6.34574 6.64243 6.78994 6.91722 7.00359 7.64052 8.29973 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017731 B = 0.005709 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.753841 B = 4903.507594 C = 5928.961791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 H 0.102 0.898 4 C 0.048 3.952 5 O -0.393 6.393 6 C 0.039 3.961 7 C 0.117 3.883 8 H 0.083 0.917 9 N -0.719 5.719 10 C 0.562 3.438 11 O -0.576 6.576 12 C -0.280 4.280 13 C -0.054 4.054 14 C -0.235 4.235 15 C -0.093 4.093 16 C -0.175 4.175 17 C 0.115 3.885 18 C -0.462 4.462 19 H 0.087 0.913 20 C 0.031 3.969 21 N -0.824 5.824 22 Si 0.977 3.023 23 H -0.269 1.269 24 H -0.255 1.255 25 H -0.267 1.267 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.121 0.879 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.406 0.594 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.314 4.371 12.729 14.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.141 4.141 3 H 0.120 0.880 4 C -0.028 4.028 5 O -0.312 6.312 6 C -0.039 4.039 7 C 0.012 3.988 8 H 0.101 0.899 9 N -0.373 5.373 10 C 0.355 3.645 11 O -0.458 6.458 12 C -0.285 4.285 13 C -0.073 4.073 14 C -0.254 4.254 15 C -0.111 4.111 16 C -0.195 4.195 17 C 0.112 3.888 18 C -0.491 4.491 19 H 0.105 0.895 20 C -0.183 4.183 21 N -0.451 5.451 22 Si 0.799 3.201 23 H -0.193 1.193 24 H -0.179 1.179 25 H -0.192 1.192 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.139 0.861 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.244 0.756 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.138 0.862 37 H 0.115 0.885 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.151 3.508 12.514 13.980 hybrid contribution 0.160 -0.567 -0.804 0.997 sum -4.991 2.941 11.711 13.065 Atomic orbital electron populations 1.21695 0.91969 1.02853 1.02942 1.23020 0.98106 1.00410 0.92518 0.88011 1.23904 0.83172 0.98427 0.97271 1.88857 1.31071 1.86578 1.24730 1.23533 0.99136 0.98774 0.82474 1.22353 0.95552 0.92602 0.88330 0.89905 1.45811 1.69720 1.15806 1.05968 1.18447 0.76473 0.86810 0.82735 1.90634 1.51132 1.21229 1.82766 1.19836 1.19758 0.95510 0.93369 1.21076 0.95656 0.91657 0.98900 1.20812 1.11346 0.99999 0.93207 1.21190 0.97776 0.94954 0.97191 1.21278 1.06417 0.93168 0.98615 1.17877 0.87233 0.93575 0.90158 1.20272 1.14339 0.96928 1.17531 0.89503 1.26811 0.93697 1.03952 0.93880 1.69747 1.11414 1.40053 1.23872 0.85227 0.79205 0.76900 0.78784 1.19281 1.17898 1.19233 0.92093 0.89508 0.93027 0.90798 0.86081 0.92143 0.91293 0.75618 0.84976 0.84901 0.86223 0.88451 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.20 71.98 0.66 -1.60 16 2 C -0.12 -2.40 3.45 -9.41 -0.03 -2.43 16 3 H 0.10 1.80 7.76 -2.39 -0.02 1.78 16 4 C 0.05 0.90 7.19 72.75 0.52 1.42 16 5 O -0.39 -10.79 11.52 -148.98 -1.72 -12.51 16 6 C 0.04 1.21 7.50 72.35 0.54 1.75 16 7 C 0.12 3.45 2.95 45.98 0.14 3.59 16 8 H 0.08 2.75 7.32 -2.39 -0.02 2.73 16 9 N -0.72 -24.41 4.99 -441.09 -2.20 -26.61 16 10 C 0.56 25.88 7.72 86.67 0.67 26.55 16 11 O -0.58 -30.96 13.20 -4.04 -0.05 -31.01 16 12 C -0.28 -13.59 5.92 -19.70 -0.12 -13.70 16 13 C -0.05 -2.15 9.52 22.50 0.21 -1.94 16 14 C -0.23 -9.07 10.03 22.41 0.22 -8.85 16 15 C -0.09 -4.00 10.01 22.26 0.22 -3.78 16 16 C -0.18 -9.07 8.62 22.72 0.20 -8.87 16 17 C 0.12 6.37 5.49 -21.11 -0.12 6.25 16 18 C -0.46 -26.70 7.77 23.42 0.18 -26.52 16 19 H 0.09 5.29 5.74 -2.91 -0.02 5.28 16 20 C 0.03 1.68 5.25 85.37 0.45 2.12 16 21 N -0.82 -44.46 11.24 21.88 0.25 -44.21 16 22 Si 0.98 42.00 29.57 68.60 2.03 44.03 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 26 H 0.06 1.00 8.09 -2.39 -0.02 0.98 16 27 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.22 8.01 -2.39 -0.02 1.20 16 30 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 2.41 7.93 -2.39 -0.02 2.39 16 33 H 0.41 11.43 6.42 -92.71 -0.60 10.83 16 34 H 0.13 4.00 6.42 -2.91 -0.02 3.98 16 35 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 36 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 37 H 0.10 5.27 6.70 -2.91 -0.02 5.25 16 38 H 0.29 14.03 8.29 -92.71 -0.77 13.26 16 Total: -1.00 -68.25 313.84 2.54 -65.71 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.48 Total: 30.60 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 3.76 Total: -26.00 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -1.95 Total: -70.82 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -1.77 Total: -43.52 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -68.25 2.54 -65.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928883123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.984 kcal (2) G-P(sol) polarization free energy of solvation -68.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds