Wall clock time and date at job start Mon Mar 30 2020 02:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.83155 * 2 1 4 4 C 1.54993 * 110.90969 * 123.64876 * 2 1 3 5 5 O 1.44381 * 103.49180 * 155.22584 * 4 2 1 6 6 C 1.43741 * 106.97007 * 319.93480 * 5 4 2 7 7 C 1.54096 * 107.29751 * 26.51634 * 6 5 4 8 8 H 1.09006 * 110.48756 * 116.77247 * 7 6 5 9 9 N 1.46498 * 110.49121 * 239.28963 * 7 6 5 10 10 C 1.34777 * 120.00225 * 273.54428 * 9 7 6 11 11 O 1.21609 * 119.99805 * 0.02562 * 10 9 7 12 12 C 1.47433 * 119.99820 * 179.97438 * 10 9 7 13 13 C 1.39222 * 120.28273 * 354.12142 * 12 10 9 14 14 C 1.38226 * 120.08822 * 179.97438 * 13 12 10 15 15 C 1.38821 * 120.67603 * 0.04502 * 14 13 12 16 16 C 1.37596 * 120.57148 * 359.69453 * 15 14 13 17 17 C 1.40706 * 119.88194 * 0.53736 * 16 15 14 18 18 C 1.40888 * 120.32568 * 179.76524 * 17 16 15 19 19 H 1.08001 * 119.99499 * 146.51904 * 18 17 16 20 20 C 1.40271 * 120.00543 * 326.51492 * 18 17 16 21 21 N 1.30628 * 119.99702 * 335.75670 * 20 18 17 22 22 Si 1.86800 * 120.00371 * 155.75596 * 20 18 17 23 23 H 1.48498 * 109.46717 * 270.00447 * 22 20 18 24 24 H 1.48499 * 109.46769 * 29.99910 * 22 20 18 25 25 H 1.48496 * 109.47241 * 150.00098 * 22 20 18 26 26 H 1.09005 * 109.46808 * 183.64808 * 1 2 3 27 27 H 1.09004 * 109.47382 * 303.64328 * 1 2 3 28 28 H 1.08991 * 109.47437 * 63.64774 * 1 2 3 29 29 H 1.09001 * 110.62020 * 36.72165 * 4 2 1 30 30 H 1.09004 * 110.75182 * 273.78924 * 4 2 1 31 31 H 1.09004 * 109.88505 * 267.08713 * 6 5 4 32 32 H 1.09004 * 109.87928 * 145.94131 * 6 5 4 33 33 H 0.97006 * 119.99713 * 93.54326 * 9 7 6 34 34 H 1.07995 * 119.95663 * 0.02562 * 13 12 10 35 35 H 1.07999 * 119.65776 * 180.02562 * 14 13 12 36 36 H 1.08006 * 119.71343 * 179.97438 * 15 14 13 37 37 H 1.08004 * 120.05921 * 180.29728 * 16 15 14 38 38 H 0.97001 * 120.00193 * 354.16534 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0187 0.0000 4 6 2.0831 -0.8023 1.2053 5 8 3.3942 -1.2143 0.7625 6 6 3.2718 -1.5881 -0.6200 7 6 2.0824 -0.8013 -1.2039 8 1 2.4205 -0.1269 -1.9907 9 7 1.0639 -1.7193 -1.7197 10 6 1.1549 -2.1875 -2.9803 11 8 2.0828 -1.8482 -3.6893 12 6 0.1301 -3.1117 -3.4991 13 6 -0.8650 -3.6008 -2.6572 14 6 -1.8241 -4.4668 -3.1480 15 6 -1.8087 -4.8598 -4.4793 16 6 -0.8410 -4.3891 -5.3368 17 6 0.1498 -3.5105 -4.8613 18 6 1.1479 -3.0267 -5.7300 19 1 1.5440 -2.0309 -5.5960 20 6 1.6273 -3.8382 -6.7688 21 7 1.5380 -5.1382 -6.6763 22 14 2.3935 -3.0602 -8.2844 23 1 1.3388 -2.8112 -9.2997 24 1 3.0339 -1.7737 -7.9102 25 1 3.4166 -3.9770 -8.8480 26 1 -0.3633 -1.0256 0.0654 27 1 -0.3634 0.5694 0.8555 28 1 -0.3634 0.4561 -0.9208 29 1 1.4563 -1.6705 1.4087 30 1 2.1581 -0.1688 2.0892 31 1 3.0826 -2.6587 -0.6992 32 1 4.1854 -1.3306 -1.1559 33 1 0.3240 -1.9902 -1.1539 34 1 -0.8881 -3.3026 -1.6195 35 1 -2.5932 -4.8416 -2.4889 36 1 -2.5655 -5.5375 -4.8463 37 1 -0.8397 -4.6966 -6.3722 38 1 1.2187 -5.5453 -5.8558 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928883126.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:19 Heat of formation + Delta-G solvation = -67.882664 kcal Electronic energy + Delta-G solvation = -21455.190955 eV Core-core repulsion = 18261.940478 eV Total energy + Delta-G solvation = -3193.250476 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.10576 -38.53988 -36.85783 -34.61816 -33.91944 -32.12142 -30.24530 -29.50548 -28.31434 -26.38174 -25.24235 -23.00867 -22.20428 -21.08387 -20.11212 -19.56581 -18.09428 -16.92898 -16.25516 -15.74788 -15.25709 -14.85741 -14.75965 -14.24899 -14.16724 -13.82158 -13.45116 -13.41021 -12.89826 -12.69799 -12.28389 -12.25986 -11.94062 -11.73963 -11.27967 -11.18613 -11.00332 -10.93084 -10.77214 -10.70014 -10.40780 -10.18117 -9.71936 -9.67110 -9.05889 -8.61853 -8.47165 -7.82156 -7.67351 -7.20722 -4.49457 2.20565 2.70618 3.17526 3.27925 3.38631 3.71978 3.96721 4.00824 4.03908 4.42747 4.56729 4.68910 4.89636 5.13428 5.30309 5.36165 5.43983 5.48968 5.57255 5.67219 5.81839 5.88138 5.90514 5.99861 6.07434 6.09573 6.21014 6.48216 6.68281 6.75849 6.96491 7.09002 7.24626 7.46483 7.55136 7.69338 7.85257 8.04933 8.17883 8.30357 8.69902 8.81013 9.29196 9.96755 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019029 B = 0.005792 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.086829 B = 4833.424213 C = 5820.678782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.050 3.950 5 O -0.380 6.380 6 C 0.035 3.965 7 C 0.122 3.878 8 H 0.099 0.901 9 N -0.741 5.741 10 C 0.564 3.436 11 O -0.536 6.536 12 C -0.269 4.269 13 C -0.042 4.042 14 C -0.262 4.262 15 C -0.075 4.075 16 C -0.200 4.200 17 C 0.120 3.880 18 C -0.467 4.467 19 H 0.106 0.894 20 C 0.034 3.966 21 N -0.785 5.785 22 Si 1.070 2.930 23 H -0.274 1.274 24 H -0.272 1.272 25 H -0.276 1.276 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.393 0.607 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.975 6.639 9.985 12.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 H 0.113 0.887 4 C -0.027 4.027 5 O -0.299 6.299 6 C -0.043 4.043 7 C 0.016 3.984 8 H 0.117 0.883 9 N -0.398 5.398 10 C 0.358 3.642 11 O -0.414 6.414 12 C -0.274 4.274 13 C -0.061 4.061 14 C -0.281 4.281 15 C -0.094 4.094 16 C -0.219 4.219 17 C 0.116 3.884 18 C -0.493 4.493 19 H 0.124 0.876 20 C -0.189 4.189 21 N -0.407 5.407 22 Si 0.893 3.107 23 H -0.200 1.200 24 H -0.197 1.197 25 H -0.201 1.201 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.230 0.770 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.447 6.463 8.100 10.372 hybrid contribution -1.351 0.001 1.813 2.261 sum -1.798 6.464 9.914 11.971 Atomic orbital electron populations 1.21660 0.93583 1.02029 1.02580 1.22978 0.97177 1.00337 0.94812 0.88748 1.23633 0.84693 0.97488 0.96911 1.88857 1.28775 1.86467 1.25804 1.23757 0.99483 0.99489 0.81529 1.22046 0.88639 0.91609 0.96142 0.88283 1.46240 1.28354 1.49782 1.15413 1.18435 0.85694 0.80238 0.79824 1.90681 1.34757 1.59067 1.56887 1.19329 1.01608 1.11647 0.94781 1.20685 0.93756 0.95372 0.96291 1.20223 1.03546 1.08225 0.96108 1.20735 0.97191 0.97615 0.93819 1.21222 0.97063 1.04984 0.98664 1.17475 0.91954 0.89213 0.89771 1.21198 1.16183 1.03849 1.08072 0.87585 1.27273 0.94889 0.94328 1.02396 1.70356 1.28314 1.11510 1.30503 0.83564 0.77134 0.76204 0.73785 1.19977 1.19729 1.20110 0.92360 0.92101 0.91493 0.92232 0.89047 0.91692 0.89206 0.77002 0.89366 0.88939 0.88908 0.87692 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.46 37.16 0.31 -1.10 16 2 C -0.13 -1.51 3.70 -88.61 -0.33 -1.83 16 3 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.05 0.55 7.17 38.21 0.27 0.83 16 5 O -0.38 -5.53 11.52 -35.23 -0.41 -5.93 16 6 C 0.04 0.55 7.50 37.73 0.28 0.83 16 7 C 0.12 1.84 3.24 -66.40 -0.21 1.62 16 8 H 0.10 1.64 7.66 -51.93 -0.40 1.24 16 9 N -0.74 -12.68 4.46 -53.39 -0.24 -12.92 16 10 C 0.56 12.69 7.71 -12.52 -0.10 12.59 16 11 O -0.54 -13.79 13.29 5.27 0.07 -13.72 16 12 C -0.27 -6.40 5.92 -104.37 -0.62 -7.02 16 13 C -0.04 -0.87 9.52 -39.22 -0.37 -1.25 16 14 C -0.26 -5.40 10.03 -39.37 -0.39 -5.80 16 15 C -0.07 -1.63 10.01 -39.60 -0.40 -2.03 16 16 C -0.20 -4.92 8.07 -38.88 -0.31 -5.23 16 17 C 0.12 3.15 5.13 -106.54 -0.55 2.60 16 18 C -0.47 -12.62 7.63 -37.82 -0.29 -12.91 16 19 H 0.11 3.01 5.96 -52.49 -0.31 2.69 16 20 C 0.03 0.87 4.92 -17.30 -0.09 0.79 16 21 N -0.78 -20.76 12.61 55.56 0.70 -20.06 16 22 Si 1.07 22.22 30.00 -169.99 -5.10 17.12 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 26 H 0.06 0.58 6.26 -51.93 -0.33 0.26 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.64 8.01 -51.93 -0.42 0.22 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.39 5.88 4.36 -40.82 -0.18 5.70 16 34 H 0.09 1.50 6.44 -52.49 -0.34 1.17 16 35 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.11 2.63 7.07 -52.48 -0.37 2.26 16 38 H 0.30 8.11 6.96 -40.82 -0.28 7.82 16 LS Contribution 309.68 15.07 4.67 4.67 Total: -1.00 -29.37 309.68 -7.88 -37.25 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -4.79 Total: 11.50 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -2.78 Total: -17.91 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.46 Total: -32.97 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.34 Total: -19.65 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.10 Total: 17.12 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.37 -7.88 -37.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928883126.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.637 kcal (2) G-P(sol) polarization free energy of solvation -29.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds