Wall clock time and date at job start Mon Mar 30 2020 02:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.83155 * 2 1 4 4 C 1.54993 * 110.90969 * 123.64876 * 2 1 3 5 5 O 1.44381 * 103.49180 * 155.22584 * 4 2 1 6 6 C 1.43741 * 106.97007 * 319.93480 * 5 4 2 7 7 C 1.54096 * 107.29751 * 26.51634 * 6 5 4 8 8 H 1.09006 * 110.48756 * 116.77247 * 7 6 5 9 9 N 1.46498 * 110.49121 * 239.28963 * 7 6 5 10 10 C 1.34777 * 120.00225 * 273.54428 * 9 7 6 11 11 O 1.21609 * 119.99805 * 0.02562 * 10 9 7 12 12 C 1.47433 * 119.99820 * 179.97438 * 10 9 7 13 13 C 1.39222 * 120.28273 * 354.12142 * 12 10 9 14 14 C 1.38226 * 120.08822 * 179.97438 * 13 12 10 15 15 C 1.38821 * 120.67603 * 0.04502 * 14 13 12 16 16 C 1.37596 * 120.57148 * 359.69453 * 15 14 13 17 17 C 1.40706 * 119.88194 * 0.53736 * 16 15 14 18 18 C 1.40888 * 120.32568 * 179.76524 * 17 16 15 19 19 H 1.08001 * 119.99499 * 146.51904 * 18 17 16 20 20 C 1.40271 * 120.00543 * 326.51492 * 18 17 16 21 21 N 1.30628 * 119.99702 * 335.75670 * 20 18 17 22 22 Si 1.86800 * 120.00371 * 155.75596 * 20 18 17 23 23 H 1.48498 * 109.46717 * 270.00447 * 22 20 18 24 24 H 1.48499 * 109.46769 * 29.99910 * 22 20 18 25 25 H 1.48496 * 109.47241 * 150.00098 * 22 20 18 26 26 H 1.09005 * 109.46808 * 183.64808 * 1 2 3 27 27 H 1.09004 * 109.47382 * 303.64328 * 1 2 3 28 28 H 1.08991 * 109.47437 * 63.64774 * 1 2 3 29 29 H 1.09001 * 110.62020 * 36.72165 * 4 2 1 30 30 H 1.09004 * 110.75182 * 273.78924 * 4 2 1 31 31 H 1.09004 * 109.88505 * 267.08713 * 6 5 4 32 32 H 1.09004 * 109.87928 * 145.94131 * 6 5 4 33 33 H 0.97006 * 119.99713 * 93.54326 * 9 7 6 34 34 H 1.07995 * 119.95663 * 0.02562 * 13 12 10 35 35 H 1.07999 * 119.65776 * 180.02562 * 14 13 12 36 36 H 1.08006 * 119.71343 * 179.97438 * 15 14 13 37 37 H 1.08004 * 120.05921 * 180.29728 * 16 15 14 38 38 H 0.97001 * 120.00193 * 354.16534 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0187 0.0000 4 6 2.0831 -0.8023 1.2053 5 8 3.3942 -1.2143 0.7625 6 6 3.2718 -1.5881 -0.6200 7 6 2.0824 -0.8013 -1.2039 8 1 2.4205 -0.1269 -1.9907 9 7 1.0639 -1.7193 -1.7197 10 6 1.1549 -2.1875 -2.9803 11 8 2.0828 -1.8482 -3.6893 12 6 0.1301 -3.1117 -3.4991 13 6 -0.8650 -3.6008 -2.6572 14 6 -1.8241 -4.4668 -3.1480 15 6 -1.8087 -4.8598 -4.4793 16 6 -0.8410 -4.3891 -5.3368 17 6 0.1498 -3.5105 -4.8613 18 6 1.1479 -3.0267 -5.7300 19 1 1.5440 -2.0309 -5.5960 20 6 1.6273 -3.8382 -6.7688 21 7 1.5380 -5.1382 -6.6763 22 14 2.3935 -3.0602 -8.2844 23 1 1.3388 -2.8112 -9.2997 24 1 3.0339 -1.7737 -7.9102 25 1 3.4166 -3.9770 -8.8480 26 1 -0.3633 -1.0256 0.0654 27 1 -0.3634 0.5694 0.8555 28 1 -0.3634 0.4561 -0.9208 29 1 1.4563 -1.6705 1.4087 30 1 2.1581 -0.1688 2.0892 31 1 3.0826 -2.6587 -0.6992 32 1 4.1854 -1.3306 -1.1559 33 1 0.3240 -1.9902 -1.1539 34 1 -0.8881 -3.3026 -1.6195 35 1 -2.5932 -4.8416 -2.4889 36 1 -2.5655 -5.5375 -4.8463 37 1 -0.8397 -4.6966 -6.3722 38 1 1.2187 -5.5453 -5.8558 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928883126.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:18 Heat of formation + Delta-G solvation = -86.369182 kcal Electronic energy + Delta-G solvation = -21455.992590 eV Core-core repulsion = 18261.940478 eV Total energy + Delta-G solvation = -3194.052112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.44706 -40.11366 -38.59774 -36.13204 -35.60558 -33.39488 -31.90879 -31.29146 -29.70269 -27.26295 -27.09770 -24.59926 -23.50724 -22.82095 -21.56134 -20.97878 -19.90584 -18.45515 -17.55789 -17.02966 -16.53591 -16.46921 -16.19288 -15.94051 -15.74796 -15.48582 -15.08640 -14.56608 -14.39954 -14.10118 -13.74111 -13.72806 -13.28045 -13.11296 -12.89228 -12.69617 -12.49629 -12.24392 -12.06943 -11.97477 -11.95285 -11.69252 -11.49953 -10.92031 -10.78716 -10.40722 -10.06744 -9.61716 -9.53731 -9.13539 -6.46256 0.39534 0.90262 1.45633 1.61033 1.75800 2.22038 2.28890 2.30054 2.69585 2.93463 3.37790 3.55071 3.76378 3.79190 4.11379 4.17291 4.22124 4.25392 4.41278 4.45695 4.60891 4.68777 4.69351 4.80895 4.85101 4.87305 4.98801 5.09780 5.14527 5.27349 5.41794 5.49794 5.63127 5.70088 5.79851 5.89249 5.96296 6.19399 6.33261 6.65671 6.83868 6.89750 7.57331 7.99220 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019029 B = 0.005792 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.086829 B = 4833.424213 C = 5820.678782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 H 0.109 0.891 4 C 0.045 3.955 5 O -0.392 6.392 6 C 0.041 3.959 7 C 0.115 3.885 8 H 0.079 0.921 9 N -0.717 5.717 10 C 0.559 3.441 11 O -0.577 6.577 12 C -0.286 4.286 13 C -0.041 4.041 14 C -0.246 4.246 15 C -0.071 4.071 16 C -0.225 4.225 17 C 0.097 3.903 18 C -0.511 4.511 19 H 0.081 0.919 20 C 0.001 3.999 21 N -0.808 5.808 22 Si 1.115 2.885 23 H -0.255 1.255 24 H -0.274 1.274 25 H -0.268 1.268 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.122 0.878 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.406 0.594 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.124 0.876 37 H 0.087 0.913 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.888 7.186 12.687 15.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.140 4.140 3 H 0.127 0.873 4 C -0.030 4.030 5 O -0.311 6.311 6 C -0.037 4.037 7 C 0.009 3.991 8 H 0.097 0.903 9 N -0.374 5.374 10 C 0.353 3.647 11 O -0.458 6.458 12 C -0.291 4.291 13 C -0.059 4.059 14 C -0.265 4.265 15 C -0.090 4.090 16 C -0.245 4.245 17 C 0.092 3.908 18 C -0.538 4.538 19 H 0.099 0.901 20 C -0.215 4.215 21 N -0.431 5.431 22 Si 0.933 3.067 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.193 1.193 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.140 0.860 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.246 0.754 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.142 0.858 37 H 0.106 0.894 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.400 7.013 10.862 13.150 hybrid contribution -0.913 -0.146 1.279 1.578 sum -3.312 6.867 12.141 14.337 Atomic orbital electron populations 1.21678 0.92200 1.02583 1.03305 1.22982 0.98222 1.00364 0.92415 0.87254 1.23918 0.83229 0.98298 0.97600 1.88854 1.30925 1.86544 1.24765 1.23541 0.99289 0.98386 0.82498 1.22199 0.88444 0.91295 0.97182 0.90257 1.45945 1.28887 1.48928 1.13625 1.18465 0.84982 0.80101 0.81187 1.90665 1.36202 1.60460 1.58469 1.19746 1.02811 1.11849 0.94697 1.21113 0.92370 0.94487 0.97947 1.20789 1.03553 1.06278 0.95913 1.21150 0.96558 0.97037 0.94240 1.21175 0.98271 1.06365 0.98657 1.17871 0.92068 0.89816 0.90998 1.21095 1.18437 1.03529 1.10766 0.90113 1.28450 0.94428 0.94151 1.04506 1.70472 1.30944 1.11902 1.29806 0.83025 0.77077 0.75342 0.71298 1.17916 1.19878 1.19255 0.92126 0.89145 0.92755 0.91355 0.85985 0.93448 0.89951 0.75368 0.85008 0.84611 0.85843 0.89436 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.46 71.98 0.61 -1.67 16 2 C -0.12 -2.37 3.70 -9.49 -0.04 -2.40 16 3 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 4 C 0.05 0.85 7.17 72.66 0.52 1.37 16 5 O -0.39 -10.68 11.52 -148.98 -1.72 -12.40 16 6 C 0.04 1.26 7.50 72.35 0.54 1.80 16 7 C 0.11 3.38 3.24 45.98 0.15 3.52 16 8 H 0.08 2.68 7.66 -2.38 -0.02 2.66 16 9 N -0.72 -23.83 4.46 -441.10 -1.97 -25.80 16 10 C 0.56 25.63 7.71 86.67 0.67 26.30 16 11 O -0.58 -31.27 13.29 -4.06 -0.05 -31.32 16 12 C -0.29 -13.67 5.92 -19.70 -0.12 -13.79 16 13 C -0.04 -1.56 9.52 22.50 0.21 -1.35 16 14 C -0.25 -9.17 10.03 22.41 0.22 -8.95 16 15 C -0.07 -2.97 10.01 22.26 0.22 -2.75 16 16 C -0.23 -11.31 8.07 22.72 0.18 -11.12 16 17 C 0.10 5.23 5.13 -21.11 -0.11 5.13 16 18 C -0.51 -29.37 7.63 23.41 0.18 -29.19 16 19 H 0.08 4.94 5.96 -2.91 -0.02 4.92 16 20 C 0.00 0.06 4.92 85.37 0.42 0.48 16 21 N -0.81 -45.03 12.61 21.88 0.28 -44.75 16 22 Si 1.12 46.88 30.00 68.60 2.06 48.94 16 23 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 26 H 0.06 0.95 6.26 -2.38 -0.01 0.94 16 27 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.19 8.01 -2.39 -0.02 1.17 16 30 H 0.12 1.60 8.14 -2.38 -0.02 1.59 16 31 H 0.05 1.61 7.93 -2.38 -0.02 1.59 16 32 H 0.08 2.60 8.14 -2.38 -0.02 2.59 16 33 H 0.41 11.03 4.36 -92.70 -0.40 10.63 16 34 H 0.13 3.85 6.44 -2.91 -0.02 3.83 16 35 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 36 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.09 4.60 7.07 -2.91 -0.02 4.58 16 38 H 0.28 16.23 6.96 -92.71 -0.65 15.59 16 Total: -1.00 -68.65 309.68 3.07 -65.58 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.80 Total: 32.35 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: 3.67 Total: -32.60 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -1.69 Total: -70.55 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -1.77 Total: -43.72 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.06 Total: 48.94 kcal Total: -68.65 3.07 -65.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928883126.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.789 kcal (2) G-P(sol) polarization free energy of solvation -68.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds