Wall clock time and date at job start Mon Mar 30 2020 02:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.56683 * 2 1 4 4 C 1.54793 * 110.61116 * 237.19096 * 2 1 3 5 5 O 1.44428 * 104.85842 * 217.50798 * 4 2 1 6 6 C 1.44422 * 105.27155 * 40.46468 * 5 4 2 7 7 C 1.54475 * 104.80620 * 319.48651 * 6 5 4 8 8 H 1.09003 * 110.51030 * 265.33861 * 7 6 5 9 9 N 1.46495 * 110.51525 * 142.76132 * 7 6 5 10 10 C 1.34779 * 119.99892 * 88.30623 * 9 7 6 11 11 O 1.21605 * 120.00304 * 0.02562 * 10 9 7 12 12 C 1.47438 * 119.99832 * 179.97438 * 10 9 7 13 13 C 1.39214 * 120.28591 * 356.44064 * 12 10 9 14 14 C 1.38221 * 120.09589 * 179.72119 * 13 12 10 15 15 C 1.38823 * 120.67392 * 0.55306 * 14 13 12 16 16 C 1.37602 * 120.57077 * 359.72577 * 15 14 13 17 17 C 1.40703 * 119.87894 * 359.97438 * 16 15 14 18 18 C 1.40894 * 120.32662 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99737 * 215.11394 * 18 17 16 20 20 C 1.40267 * 119.99974 * 35.11477 * 18 17 16 21 21 N 1.30629 * 120.00474 * 9.48424 * 20 18 17 22 22 Si 1.86801 * 119.99851 * 189.48572 * 20 18 17 23 23 H 1.48500 * 109.47160 * 60.00170 * 22 20 18 24 24 H 1.48509 * 109.47062 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47482 * 299.99775 * 22 20 18 26 26 H 1.09005 * 109.47053 * 297.32519 * 1 2 3 27 27 H 1.08996 * 109.46842 * 57.32344 * 1 2 3 28 28 H 1.09005 * 109.46964 * 177.32743 * 1 2 3 29 29 H 1.08998 * 110.39024 * 98.64373 * 4 2 1 30 30 H 1.08997 * 110.30540 * 336.33895 * 4 2 1 31 31 H 1.09004 * 110.37366 * 200.65626 * 6 5 4 32 32 H 1.08998 * 110.47331 * 78.36901 * 6 5 4 33 33 H 0.97002 * 120.00103 * 268.30979 * 9 7 6 34 34 H 1.08006 * 119.95096 * 359.97438 * 13 12 10 35 35 H 1.07997 * 119.66526 * 180.30433 * 14 13 12 36 36 H 1.08004 * 119.71403 * 179.74524 * 15 14 13 37 37 H 1.07998 * 120.06285 * 179.97438 * 16 15 14 38 38 H 0.96994 * 120.00535 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0205 0.0000 4 6 2.0749 -0.7850 -1.2177 5 8 3.2418 -1.4760 -0.7209 6 6 2.8750 -1.9442 0.5952 7 6 2.0714 -0.7813 1.2181 8 1 2.7220 -0.1470 1.8203 9 7 0.9662 -1.2976 2.0293 10 6 1.1635 -1.5876 3.3306 11 8 2.2588 -1.4202 3.8316 12 6 0.0510 -2.1067 4.1471 13 6 -1.2233 -2.2299 3.6003 14 6 -2.2622 -2.7224 4.3675 15 6 -2.0539 -3.0885 5.6903 16 6 -0.8069 -2.9728 6.2605 17 6 0.2689 -2.4801 5.4992 18 6 1.5496 -2.3573 6.0736 19 1 2.1929 -1.5380 5.7885 20 6 1.9889 -3.2990 7.0158 21 7 1.2958 -4.3863 7.2247 22 14 3.5653 -2.9982 7.9718 23 1 3.4384 -1.7417 8.7529 24 1 3.8070 -4.1338 8.8978 25 1 4.7034 -2.8800 7.0253 26 1 -0.3633 0.4718 0.9130 27 1 -0.3633 0.5548 -0.8650 28 1 -0.3633 -1.0266 -0.0479 29 1 2.3523 -0.0994 -2.0184 30 1 1.3317 -1.5003 -1.5700 31 1 3.7670 -2.1491 1.1873 32 1 2.2551 -2.8379 0.5229 33 1 0.0923 -1.4308 1.6298 34 1 -1.3995 -1.9440 2.5737 35 1 -3.2469 -2.8197 3.9348 36 1 -2.8777 -3.4677 6.2769 37 1 -0.6542 -3.2596 7.2904 38 1 1.5994 -5.0374 7.8764 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928883129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:21 Heat of formation + Delta-G solvation = -59.499784 kcal Electronic energy + Delta-G solvation = -21393.704286 eV Core-core repulsion = 18200.817319 eV Total energy + Delta-G solvation = -3192.886967 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.03838 -38.45673 -36.70651 -34.62906 -33.69274 -32.04323 -30.14749 -29.69273 -28.14889 -26.36796 -25.41659 -23.04953 -22.17030 -21.00411 -19.90986 -19.39813 -17.58687 -16.83456 -16.06691 -15.76187 -15.28530 -15.22988 -14.72218 -14.27391 -14.04707 -13.67392 -13.41192 -13.12635 -12.77659 -12.68934 -12.36002 -12.24667 -11.81109 -11.59266 -11.17176 -11.13783 -11.11654 -10.86461 -10.69610 -10.64750 -10.53411 -10.13127 -9.79650 -9.70950 -9.27185 -8.49158 -8.36763 -7.62477 -7.37209 -6.82204 -4.41880 2.32176 2.80063 3.08690 3.14660 3.23692 3.71916 3.96526 4.08404 4.22883 4.47789 4.64980 4.71107 4.93602 5.18821 5.32380 5.36503 5.49763 5.57455 5.60230 5.72454 5.90966 5.93319 5.97244 6.04740 6.06041 6.22431 6.27554 6.59088 6.71460 6.91933 7.06809 7.13466 7.22435 7.43096 7.58709 7.85224 7.95902 8.15166 8.32882 8.65007 8.80522 8.87827 9.37019 10.13571 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018230 B = 0.005942 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.561313 B = 4710.716630 C = 5922.250478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 H 0.090 0.910 4 C 0.048 3.952 5 O -0.377 6.377 6 C 0.034 3.966 7 C 0.123 3.877 8 H 0.099 0.901 9 N -0.741 5.741 10 C 0.564 3.436 11 O -0.537 6.537 12 C -0.262 4.262 13 C -0.058 4.058 14 C -0.244 4.244 15 C -0.096 4.096 16 C -0.146 4.146 17 C 0.147 3.853 18 C -0.420 4.420 19 H 0.110 0.890 20 C 0.069 3.931 21 N -0.793 5.793 22 Si 0.917 3.083 23 H -0.263 1.263 24 H -0.280 1.280 25 H -0.262 1.262 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.395 0.605 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 4.980 -10.322 11.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 H 0.108 0.892 4 C -0.029 4.029 5 O -0.295 6.295 6 C -0.044 4.044 7 C 0.016 3.984 8 H 0.117 0.883 9 N -0.399 5.399 10 C 0.358 3.642 11 O -0.416 6.416 12 C -0.267 4.267 13 C -0.077 4.077 14 C -0.264 4.264 15 C -0.115 4.115 16 C -0.165 4.165 17 C 0.142 3.858 18 C -0.449 4.449 19 H 0.128 0.872 20 C -0.149 4.149 21 N -0.418 5.418 22 Si 0.741 3.259 23 H -0.187 1.187 24 H -0.205 1.205 25 H -0.186 1.186 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.233 0.767 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.134 0.866 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.996 4.841 -9.919 11.082 hybrid contribution -0.080 -0.197 0.280 0.352 sum -1.077 4.644 -9.639 10.754 Atomic orbital electron populations 1.21773 0.93991 1.02087 1.02720 1.22816 0.97052 1.00578 0.94932 0.89172 1.23548 0.88294 0.94917 0.96121 1.89121 1.35021 1.73907 1.31426 1.23962 1.00578 0.96800 0.83087 1.22065 0.89666 0.94796 0.91857 0.88336 1.46261 1.12964 1.69765 1.10935 1.18482 0.88763 0.76657 0.80265 1.90654 1.26405 1.53131 1.71388 1.19431 0.92435 1.19676 0.95193 1.20625 0.92946 0.97440 0.96642 1.20278 0.97537 1.12702 0.95866 1.20801 0.96597 0.99258 0.94839 1.21345 0.91297 1.03900 0.99956 1.17478 0.93264 0.86527 0.88487 1.20274 0.99986 1.09140 1.15451 0.87232 1.26148 0.99199 0.94262 0.95299 1.69705 1.37534 1.06736 1.27787 0.86215 0.81637 0.78765 0.79302 1.18729 1.20466 1.18612 0.91243 0.92011 0.92206 0.89210 0.92222 0.88389 0.91857 0.76714 0.89459 0.89093 0.89060 0.86618 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 7.81 37.16 0.29 -1.18 16 2 C -0.13 -1.53 3.73 -88.88 -0.33 -1.86 16 3 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.05 0.53 7.20 38.10 0.27 0.81 16 5 O -0.38 -5.49 11.65 -35.23 -0.41 -5.91 16 6 C 0.03 0.52 7.35 37.93 0.28 0.80 16 7 C 0.12 1.87 3.42 -66.36 -0.23 1.65 16 8 H 0.10 1.67 7.61 -51.93 -0.40 1.28 16 9 N -0.74 -12.76 4.55 -53.36 -0.24 -13.00 16 10 C 0.56 12.72 7.73 -12.51 -0.10 12.63 16 11 O -0.54 -13.78 13.19 5.27 0.07 -13.71 16 12 C -0.26 -6.29 5.92 -104.37 -0.62 -6.91 16 13 C -0.06 -1.20 9.52 -39.23 -0.37 -1.58 16 14 C -0.24 -5.09 10.03 -39.37 -0.39 -5.49 16 15 C -0.10 -2.13 10.01 -39.60 -0.40 -2.53 16 16 C -0.15 -3.66 8.62 -38.88 -0.34 -3.99 16 17 C 0.15 3.89 5.49 -106.54 -0.59 3.30 16 18 C -0.42 -11.44 7.77 -37.82 -0.29 -11.74 16 19 H 0.11 3.09 5.74 -52.48 -0.30 2.79 16 20 C 0.07 1.77 5.24 -17.30 -0.09 1.68 16 21 N -0.79 -20.42 11.22 55.56 0.62 -19.80 16 22 Si 0.92 19.58 29.57 -169.99 -5.03 14.55 16 23 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 26 H 0.07 0.75 7.75 -51.93 -0.40 0.35 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.58 6.97 -51.93 -0.36 0.22 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.61 7.83 -51.93 -0.41 0.20 16 31 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 32 H 0.06 0.98 8.06 -51.93 -0.42 0.56 16 33 H 0.39 5.92 3.93 -40.82 -0.16 5.75 16 34 H 0.09 1.49 6.41 -52.48 -0.34 1.15 16 35 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 37 H 0.12 2.97 6.68 -52.49 -0.35 2.62 16 38 H 0.28 6.65 8.29 -40.82 -0.34 6.31 16 LS Contribution 309.33 15.07 4.66 4.66 Total: -1.00 -29.36 309.33 -8.03 -37.39 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -4.80 Total: 10.23 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -2.90 Total: -14.41 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.38 Total: -32.80 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.34 Total: -19.62 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.36 -8.03 -37.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928883129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.109 kcal (2) G-P(sol) polarization free energy of solvation -29.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds