Wall clock time and date at job start Mon Mar 30 2020 02:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.56683 * 2 1 4 4 C 1.54793 * 110.61116 * 237.19096 * 2 1 3 5 5 O 1.44428 * 104.85842 * 217.50798 * 4 2 1 6 6 C 1.44422 * 105.27155 * 40.46468 * 5 4 2 7 7 C 1.54475 * 104.80620 * 319.48651 * 6 5 4 8 8 H 1.09003 * 110.51030 * 265.33861 * 7 6 5 9 9 N 1.46495 * 110.51525 * 142.76132 * 7 6 5 10 10 C 1.34779 * 119.99892 * 88.30623 * 9 7 6 11 11 O 1.21605 * 120.00304 * 0.02562 * 10 9 7 12 12 C 1.47438 * 119.99832 * 179.97438 * 10 9 7 13 13 C 1.39214 * 120.28591 * 356.44064 * 12 10 9 14 14 C 1.38221 * 120.09589 * 179.72119 * 13 12 10 15 15 C 1.38823 * 120.67392 * 0.55306 * 14 13 12 16 16 C 1.37602 * 120.57077 * 359.72577 * 15 14 13 17 17 C 1.40703 * 119.87894 * 359.97438 * 16 15 14 18 18 C 1.40894 * 120.32662 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99737 * 215.11394 * 18 17 16 20 20 C 1.40267 * 119.99974 * 35.11477 * 18 17 16 21 21 N 1.30629 * 120.00474 * 9.48424 * 20 18 17 22 22 Si 1.86801 * 119.99851 * 189.48572 * 20 18 17 23 23 H 1.48500 * 109.47160 * 60.00170 * 22 20 18 24 24 H 1.48509 * 109.47062 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47482 * 299.99775 * 22 20 18 26 26 H 1.09005 * 109.47053 * 297.32519 * 1 2 3 27 27 H 1.08996 * 109.46842 * 57.32344 * 1 2 3 28 28 H 1.09005 * 109.46964 * 177.32743 * 1 2 3 29 29 H 1.08998 * 110.39024 * 98.64373 * 4 2 1 30 30 H 1.08997 * 110.30540 * 336.33895 * 4 2 1 31 31 H 1.09004 * 110.37366 * 200.65626 * 6 5 4 32 32 H 1.08998 * 110.47331 * 78.36901 * 6 5 4 33 33 H 0.97002 * 120.00103 * 268.30979 * 9 7 6 34 34 H 1.08006 * 119.95096 * 359.97438 * 13 12 10 35 35 H 1.07997 * 119.66526 * 180.30433 * 14 13 12 36 36 H 1.08004 * 119.71403 * 179.74524 * 15 14 13 37 37 H 1.07998 * 120.06285 * 179.97438 * 16 15 14 38 38 H 0.96994 * 120.00535 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0205 0.0000 4 6 2.0749 -0.7850 -1.2177 5 8 3.2418 -1.4760 -0.7209 6 6 2.8750 -1.9442 0.5952 7 6 2.0714 -0.7813 1.2181 8 1 2.7220 -0.1470 1.8203 9 7 0.9662 -1.2976 2.0293 10 6 1.1635 -1.5876 3.3306 11 8 2.2588 -1.4202 3.8316 12 6 0.0510 -2.1067 4.1471 13 6 -1.2233 -2.2299 3.6003 14 6 -2.2622 -2.7224 4.3675 15 6 -2.0539 -3.0885 5.6903 16 6 -0.8069 -2.9728 6.2605 17 6 0.2689 -2.4801 5.4992 18 6 1.5496 -2.3573 6.0736 19 1 2.1929 -1.5380 5.7885 20 6 1.9889 -3.2990 7.0158 21 7 1.2958 -4.3863 7.2247 22 14 3.5653 -2.9982 7.9718 23 1 3.4384 -1.7417 8.7529 24 1 3.8070 -4.1338 8.8978 25 1 4.7034 -2.8800 7.0253 26 1 -0.3633 0.4718 0.9130 27 1 -0.3633 0.5548 -0.8650 28 1 -0.3633 -1.0266 -0.0479 29 1 2.3523 -0.0994 -2.0184 30 1 1.3317 -1.5003 -1.5700 31 1 3.7670 -2.1491 1.1873 32 1 2.2551 -2.8379 0.5229 33 1 0.0923 -1.4308 1.6298 34 1 -1.3995 -1.9440 2.5737 35 1 -3.2469 -2.8197 3.9348 36 1 -2.8777 -3.4677 6.2769 37 1 -0.6542 -3.2596 7.2904 38 1 1.5994 -5.0374 7.8764 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928883129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:21 Heat of formation + Delta-G solvation = -77.964409 kcal Electronic energy + Delta-G solvation = -21394.504972 eV Core-core repulsion = 18200.817319 eV Total energy + Delta-G solvation = -3193.687654 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.36376 -40.01718 -38.44370 -36.07001 -35.45805 -33.30582 -31.86251 -31.42466 -29.53924 -27.27699 -27.22523 -24.54278 -23.55265 -22.73706 -21.39771 -20.77074 -19.37133 -18.35714 -17.39766 -17.06987 -17.01841 -16.41998 -16.07811 -15.94725 -15.65912 -15.13508 -14.98443 -14.50947 -14.47093 -14.09337 -13.57204 -13.47993 -13.29212 -13.06070 -12.89058 -12.85029 -12.45272 -12.31835 -12.08311 -11.94443 -11.89773 -11.68104 -11.47319 -11.13889 -10.87979 -10.25810 -9.97394 -9.40129 -9.21843 -8.68338 -6.37285 0.51128 1.02007 1.32751 1.43901 1.50199 2.20125 2.31453 2.34777 2.79033 3.08323 3.43442 3.69781 3.78812 3.86963 4.13413 4.21137 4.31326 4.37091 4.46421 4.58867 4.67306 4.69616 4.77938 4.82234 4.95154 4.99494 5.09095 5.14902 5.24187 5.28356 5.33918 5.53674 5.62015 5.80677 5.83247 6.05775 6.11309 6.34982 6.64330 6.79091 6.92097 7.00733 7.65260 8.29463 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018230 B = 0.005942 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.561313 B = 4710.716630 C = 5922.250478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 H 0.102 0.898 4 C 0.045 3.955 5 O -0.391 6.391 6 C 0.039 3.961 7 C 0.115 3.885 8 H 0.074 0.926 9 N -0.718 5.718 10 C 0.559 3.441 11 O -0.578 6.578 12 C -0.280 4.280 13 C -0.054 4.054 14 C -0.234 4.234 15 C -0.092 4.092 16 C -0.176 4.176 17 C 0.115 3.885 18 C -0.462 4.462 19 H 0.086 0.914 20 C 0.033 3.967 21 N -0.823 5.823 22 Si 0.976 3.024 23 H -0.258 1.258 24 H -0.260 1.260 25 H -0.274 1.274 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.409 0.591 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.031 5.497 -12.740 14.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 H 0.120 0.880 4 C -0.031 4.031 5 O -0.309 6.309 6 C -0.040 4.040 7 C 0.009 3.991 8 H 0.093 0.907 9 N -0.375 5.375 10 C 0.353 3.647 11 O -0.459 6.459 12 C -0.285 4.285 13 C -0.073 4.073 14 C -0.253 4.253 15 C -0.111 4.111 16 C -0.195 4.195 17 C 0.112 3.888 18 C -0.491 4.491 19 H 0.104 0.896 20 C -0.182 4.182 21 N -0.449 5.449 22 Si 0.798 3.202 23 H -0.182 1.182 24 H -0.183 1.183 25 H -0.199 1.199 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.083 0.917 29 H 0.135 0.865 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.250 0.750 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.138 0.862 37 H 0.116 0.884 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.057 5.365 -12.381 13.836 hybrid contribution 0.384 -0.298 0.817 0.951 sum -2.673 5.066 -11.564 12.905 Atomic orbital electron populations 1.21796 0.92346 1.02799 1.03624 1.22816 0.98372 1.00497 0.92599 0.87982 1.23834 0.87543 0.95440 0.96322 1.89111 1.36890 1.74362 1.30576 1.23752 0.99659 0.96824 0.83730 1.22191 0.89050 0.95032 0.92791 0.90731 1.45976 1.14181 1.68161 1.09226 1.18510 0.87919 0.76466 0.81823 1.90638 1.27785 1.54823 1.72649 1.19823 0.94439 1.19344 0.94880 1.21054 0.91403 0.96099 0.98710 1.20811 0.99336 1.10167 0.94988 1.21190 0.96091 0.97826 0.95995 1.21280 0.92541 1.06175 0.99515 1.17862 0.93521 0.87478 0.89977 1.20223 1.00757 1.10054 1.18100 0.89574 1.26785 1.01963 0.93744 0.95743 1.69730 1.39075 1.07320 1.28784 0.85347 0.77511 0.79372 0.78008 1.18203 1.18343 1.19898 0.92179 0.89127 0.91729 0.86483 0.90697 0.90438 0.91918 0.75040 0.85020 0.84801 0.86221 0.88448 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 7.81 71.98 0.56 -1.77 16 2 C -0.12 -2.47 3.73 -9.67 -0.04 -2.50 16 3 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 4 C 0.04 0.84 7.20 72.59 0.52 1.36 16 5 O -0.39 -10.82 11.65 -148.98 -1.74 -12.56 16 6 C 0.04 1.19 7.35 72.48 0.53 1.72 16 7 C 0.12 3.46 3.42 46.01 0.16 3.62 16 8 H 0.07 2.61 7.61 -2.39 -0.02 2.60 16 9 N -0.72 -23.98 4.55 -440.97 -2.01 -25.99 16 10 C 0.56 25.70 7.73 86.67 0.67 26.37 16 11 O -0.58 -31.23 13.19 -4.05 -0.05 -31.29 16 12 C -0.28 -13.47 5.92 -19.70 -0.12 -13.59 16 13 C -0.05 -2.10 9.52 22.50 0.21 -1.89 16 14 C -0.23 -8.87 10.03 22.41 0.22 -8.64 16 15 C -0.09 -3.95 10.01 22.26 0.22 -3.72 16 16 C -0.18 -9.02 8.62 22.72 0.20 -8.82 16 17 C 0.12 6.34 5.49 -21.11 -0.12 6.22 16 18 C -0.46 -26.73 7.77 23.41 0.18 -26.54 16 19 H 0.09 5.24 5.74 -2.91 -0.02 5.23 16 20 C 0.03 1.75 5.24 85.37 0.45 2.19 16 21 N -0.82 -44.22 11.22 21.88 0.25 -43.97 16 22 Si 0.98 42.08 29.57 68.60 2.03 44.11 16 23 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 24 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 26 H 0.06 1.09 7.75 -2.38 -0.02 1.07 16 27 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 0.96 6.97 -2.38 -0.02 0.95 16 29 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.07 1.21 7.83 -2.39 -0.02 1.19 16 31 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.06 1.91 8.06 -2.39 -0.02 1.89 16 33 H 0.41 11.09 3.93 -92.71 -0.36 10.73 16 34 H 0.13 3.85 6.41 -2.91 -0.02 3.83 16 35 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 36 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 37 H 0.10 5.24 6.68 -2.91 -0.02 5.22 16 38 H 0.29 14.07 8.29 -92.71 -0.77 13.30 16 Total: -1.00 -68.28 309.33 2.86 -65.42 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.72 Total: 30.28 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 3.66 Total: -26.00 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -1.76 Total: -69.96 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -1.79 Total: -43.84 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -68.28 2.86 -65.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928883129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.548 kcal (2) G-P(sol) polarization free energy of solvation -68.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds