Wall clock time and date at job start Mon Mar 30 2020 02:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.45805 * 2 1 4 4 C 1.54484 * 110.51132 * 122.60269 * 2 1 3 5 5 O 1.44423 * 104.80547 * 142.62454 * 4 2 1 6 6 C 1.44426 * 105.27326 * 319.48827 * 5 4 2 7 7 C 1.54480 * 104.80395 * 40.51607 * 6 5 4 8 8 H 1.08990 * 110.51641 * 94.66348 * 7 6 5 9 9 N 1.46505 * 110.50886 * 217.37655 * 7 6 5 10 10 C 1.34777 * 119.99759 * 269.63917 * 9 7 6 11 11 O 1.21585 * 120.00085 * 359.97438 * 10 9 7 12 12 C 1.47644 * 119.99752 * 180.02562 * 10 9 7 13 13 C 1.40013 * 119.89802 * 359.71990 * 12 10 9 14 14 C 1.36314 * 120.10928 * 179.72183 * 13 12 10 15 15 C 1.40889 * 119.88823 * 0.53541 * 14 13 12 16 16 C 1.41111 * 120.09979 * 179.72273 * 15 14 13 17 17 H 1.08004 * 119.99645 * 155.09667 * 16 15 14 18 18 C 1.40221 * 120.00148 * 335.08546 * 16 15 14 19 19 N 1.30638 * 120.00257 * 342.21921 * 18 16 15 20 20 Si 1.86807 * 119.99943 * 162.21281 * 18 16 15 21 21 H 1.48501 * 109.46608 * 94.66698 * 20 18 16 22 22 H 1.48497 * 109.47251 * 214.66500 * 20 18 16 23 23 H 1.48498 * 109.46853 * 334.66749 * 20 18 16 24 24 C 1.40887 * 119.79710 * 359.73667 * 15 14 13 25 25 C 1.36325 * 119.88662 * 0.02562 * 24 15 14 26 26 H 1.08996 * 109.46924 * 298.85352 * 1 2 3 27 27 H 1.08998 * 109.47010 * 178.84938 * 1 2 3 28 28 H 1.09004 * 109.46653 * 58.85109 * 1 2 3 29 29 H 1.08998 * 110.37064 * 261.45826 * 4 2 1 30 30 H 1.09004 * 110.36834 * 23.67839 * 4 2 1 31 31 H 1.09006 * 110.37377 * 159.34235 * 6 5 4 32 32 H 1.09000 * 110.37498 * 281.68077 * 6 5 4 33 33 H 0.97003 * 120.00289 * 89.64124 * 9 7 6 34 34 H 1.08004 * 119.94102 * 0.02562 * 13 12 10 35 35 H 1.08003 * 120.05636 * 180.30501 * 14 13 12 36 36 H 0.97001 * 120.00455 * 179.97438 * 19 18 16 37 37 H 1.07998 * 120.05978 * 179.97438 * 24 15 14 38 38 H 1.08001 * 119.94178 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0713 -0.7796 1.2189 5 8 3.2398 -1.4704 0.7259 6 6 2.8757 -1.9430 -0.5894 7 6 2.0715 -0.7830 -1.2170 8 1 2.7220 -0.1495 -1.8200 9 7 0.9662 -1.3032 -2.0257 10 6 1.1522 -1.5595 -3.3358 11 8 2.2371 -1.3585 -3.8465 12 6 0.0382 -2.0833 -4.1509 13 6 -1.2089 -2.3185 -3.5594 14 6 -2.2421 -2.7967 -4.3092 15 6 -2.0502 -3.0649 -5.6789 16 6 -3.1150 -3.5655 -6.4580 17 1 -3.1269 -3.4011 -7.5253 18 6 -4.1573 -4.2766 -5.8463 19 7 -3.9932 -4.7771 -4.6508 20 14 -5.7807 -4.5083 -6.7410 21 1 -5.7729 -5.8127 -7.4508 22 1 -6.8946 -4.4857 -5.7593 23 1 -5.9650 -3.4108 -7.7242 24 6 -0.7919 -2.8321 -6.2684 25 6 0.2339 -2.3491 -5.5115 26 1 -0.3633 0.4959 0.9001 27 1 -0.3633 -1.0274 -0.0206 28 1 -0.3633 0.5316 -0.8796 29 1 2.3464 -0.0912 2.0179 30 1 1.3277 -1.4935 1.5734 31 1 3.7689 -2.1483 -1.1796 32 1 2.2564 -2.8367 -0.5135 33 1 0.1005 -1.4632 -1.6183 34 1 -1.3539 -2.1161 -2.5085 35 1 -3.2051 -2.9732 -3.8532 36 1 -4.7143 -5.2687 -4.2275 37 1 -0.6400 -3.0366 -7.3179 38 1 1.1989 -2.1707 -5.9623 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928900711.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:40 Heat of formation + Delta-G solvation = -68.712997 kcal Electronic energy + Delta-G solvation = -20818.078437 eV Core-core repulsion = 17624.791955 eV Total energy + Delta-G solvation = -3193.286482 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.18379 -38.57242 -37.06449 -34.74319 -33.91187 -32.22811 -30.38680 -29.49291 -28.55311 -26.43138 -25.84090 -23.02327 -22.06421 -21.01560 -20.14894 -19.52373 -17.57747 -17.28539 -16.31970 -15.91725 -15.48728 -15.36662 -14.87012 -14.25425 -14.05046 -13.75040 -13.56841 -13.22301 -12.92942 -12.68667 -12.39516 -12.16058 -12.08220 -11.92503 -11.38183 -11.28940 -11.21733 -11.11520 -10.95917 -10.75124 -10.66995 -10.09942 -9.89821 -9.60515 -9.39028 -9.03262 -8.67517 -7.76820 -7.58850 -7.07868 -4.64474 2.18011 2.87332 2.92017 2.98162 2.99372 3.56611 3.70534 3.79732 4.09464 4.37230 4.51352 4.63686 4.84797 5.09280 5.22560 5.28267 5.42036 5.51492 5.53373 5.65344 5.78943 5.86339 5.92324 5.97907 6.00695 6.17515 6.27742 6.59888 6.72827 6.78586 6.91748 7.02544 7.08903 7.39136 7.60461 7.73824 7.81662 8.02791 8.16863 8.35414 8.58855 8.70797 9.01086 9.84236 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029748 B = 0.003916 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.001485 B = 7148.510115 C = 7707.572311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 H 0.091 0.909 4 C 0.048 3.952 5 O -0.375 6.375 6 C 0.034 3.966 7 C 0.120 3.880 8 H 0.100 0.900 9 N -0.734 5.734 10 C 0.571 3.429 11 O -0.574 6.574 12 C -0.286 4.286 13 C -0.062 4.062 14 C -0.178 4.178 15 C 0.129 3.871 16 C -0.442 4.442 17 H 0.085 0.915 18 C 0.075 3.925 19 N -0.771 5.771 20 Si 0.913 3.087 21 H -0.267 1.267 22 H -0.272 1.272 23 H -0.257 1.257 24 C -0.239 4.239 25 C -0.021 4.021 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.400 0.600 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.287 0.713 37 H 0.098 0.902 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.967 5.180 9.130 10.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 H 0.109 0.891 4 C -0.029 4.029 5 O -0.293 6.293 6 C -0.044 4.044 7 C 0.014 3.986 8 H 0.118 0.882 9 N -0.391 5.391 10 C 0.366 3.634 11 O -0.456 6.456 12 C -0.290 4.290 13 C -0.082 4.082 14 C -0.197 4.197 15 C 0.126 3.874 16 C -0.469 4.469 17 H 0.103 0.897 18 C -0.146 4.146 19 N -0.394 5.394 20 Si 0.736 3.264 21 H -0.192 1.192 22 H -0.197 1.197 23 H -0.181 1.181 24 C -0.258 4.258 25 C -0.040 4.040 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.082 0.918 33 H 0.239 0.761 34 H 0.105 0.895 35 H 0.138 0.862 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.816 5.136 9.076 10.802 hybrid contribution -1.381 -0.329 -0.151 1.428 sum 1.434 4.807 8.925 10.238 Atomic orbital electron populations 1.21780 0.93809 1.02246 1.02804 1.22776 0.97221 1.00621 0.94784 0.89089 1.23508 0.88224 0.95024 0.96160 1.89124 1.35018 1.73842 1.31364 1.23948 1.00423 0.96750 0.83324 1.22124 0.89544 0.94923 0.92058 0.88168 1.46165 1.14150 1.68842 1.09925 1.18663 0.88233 0.75750 0.80719 1.90634 1.27424 1.55177 1.72343 1.18873 0.94086 1.21232 0.94852 1.20442 0.92990 0.97897 0.96842 1.20967 0.98636 1.05024 0.95078 1.17788 0.91080 0.86338 0.92219 1.19863 1.02979 1.27990 0.96118 0.89670 1.26098 1.00554 0.93216 0.94776 1.69737 1.33370 1.22503 1.13837 0.86214 0.80036 0.79933 0.80229 1.19201 1.19712 1.18054 1.20724 0.93589 1.12345 0.99147 1.20367 0.97445 0.93903 0.92299 0.91850 0.92130 0.91258 0.89085 0.92054 0.88473 0.91755 0.76070 0.89540 0.86227 0.90206 0.88344 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 7.83 37.16 0.29 -1.17 16 2 C -0.13 -1.45 3.72 -89.05 -0.33 -1.78 16 3 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.05 0.50 7.19 37.94 0.27 0.77 16 5 O -0.38 -5.10 11.65 -35.23 -0.41 -5.51 16 6 C 0.03 0.47 7.35 37.93 0.28 0.75 16 7 C 0.12 1.70 3.46 -66.36 -0.23 1.47 16 8 H 0.10 1.57 7.55 -51.93 -0.39 1.18 16 9 N -0.73 -11.91 4.57 -53.29 -0.24 -12.15 16 10 C 0.57 11.86 7.76 -12.42 -0.10 11.76 16 11 O -0.57 -13.36 15.97 5.29 0.08 -13.27 16 12 C -0.29 -6.41 5.89 -104.73 -0.62 -7.03 16 13 C -0.06 -1.35 9.47 -39.61 -0.38 -1.73 16 14 C -0.18 -4.26 8.63 -39.27 -0.34 -4.60 16 15 C 0.13 3.23 5.57 -106.80 -0.60 2.64 16 16 C -0.44 -10.83 9.04 -37.75 -0.34 -11.17 16 17 H 0.09 1.99 7.91 -52.48 -0.42 1.58 16 18 C 0.07 1.72 5.13 -17.31 -0.09 1.63 16 19 N -0.77 -18.16 10.97 55.56 0.61 -17.55 16 20 Si 0.91 16.94 29.60 -169.99 -5.03 11.91 16 21 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 22 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 24 C -0.24 -5.70 9.73 -39.27 -0.38 -6.08 16 25 C -0.02 -0.49 9.52 -39.61 -0.38 -0.86 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.60 6.75 -51.93 -0.35 0.25 16 28 H 0.07 0.74 7.98 -51.93 -0.41 0.33 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.59 7.87 -51.93 -0.41 0.19 16 31 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16 33 H 0.40 5.84 3.90 -40.82 -0.16 5.68 16 34 H 0.09 1.57 6.37 -52.48 -0.33 1.24 16 35 H 0.12 2.90 6.17 -52.48 -0.32 2.58 16 36 H 0.29 6.06 8.29 -40.82 -0.34 5.72 16 37 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 38 H 0.10 2.28 7.63 -52.49 -0.40 1.88 16 LS Contribution 313.49 15.07 4.72 4.72 Total: -1.00 -27.85 313.49 -8.06 -35.91 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -4.87 Total: 11.34 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -2.93 Total: -15.40 kcal Atomic # 7 Polarization: -30.07 SS G_CDS: 0.37 Total: -29.70 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.33 Total: -18.78 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.03 Total: 11.91 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.85 -8.06 -35.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928900711.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.805 kcal (2) G-P(sol) polarization free energy of solvation -27.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds