Wall clock time and date at job start Mon Mar 30 2020 02:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.45805 * 2 1 4 4 C 1.54484 * 110.51132 * 122.60269 * 2 1 3 5 5 O 1.44423 * 104.80547 * 142.62454 * 4 2 1 6 6 C 1.44426 * 105.27326 * 319.48827 * 5 4 2 7 7 C 1.54480 * 104.80395 * 40.51607 * 6 5 4 8 8 H 1.08990 * 110.51641 * 94.66348 * 7 6 5 9 9 N 1.46505 * 110.50886 * 217.37655 * 7 6 5 10 10 C 1.34777 * 119.99759 * 269.63917 * 9 7 6 11 11 O 1.21585 * 120.00085 * 359.97438 * 10 9 7 12 12 C 1.47644 * 119.99752 * 180.02562 * 10 9 7 13 13 C 1.40013 * 119.89802 * 359.71990 * 12 10 9 14 14 C 1.36314 * 120.10928 * 179.72183 * 13 12 10 15 15 C 1.40889 * 119.88823 * 0.53541 * 14 13 12 16 16 C 1.41111 * 120.09979 * 179.72273 * 15 14 13 17 17 H 1.08004 * 119.99645 * 155.09667 * 16 15 14 18 18 C 1.40221 * 120.00148 * 335.08546 * 16 15 14 19 19 N 1.30638 * 120.00257 * 342.21921 * 18 16 15 20 20 Si 1.86807 * 119.99943 * 162.21281 * 18 16 15 21 21 H 1.48501 * 109.46608 * 94.66698 * 20 18 16 22 22 H 1.48497 * 109.47251 * 214.66500 * 20 18 16 23 23 H 1.48498 * 109.46853 * 334.66749 * 20 18 16 24 24 C 1.40887 * 119.79710 * 359.73667 * 15 14 13 25 25 C 1.36325 * 119.88662 * 0.02562 * 24 15 14 26 26 H 1.08996 * 109.46924 * 298.85352 * 1 2 3 27 27 H 1.08998 * 109.47010 * 178.84938 * 1 2 3 28 28 H 1.09004 * 109.46653 * 58.85109 * 1 2 3 29 29 H 1.08998 * 110.37064 * 261.45826 * 4 2 1 30 30 H 1.09004 * 110.36834 * 23.67839 * 4 2 1 31 31 H 1.09006 * 110.37377 * 159.34235 * 6 5 4 32 32 H 1.09000 * 110.37498 * 281.68077 * 6 5 4 33 33 H 0.97003 * 120.00289 * 89.64124 * 9 7 6 34 34 H 1.08004 * 119.94102 * 0.02562 * 13 12 10 35 35 H 1.08003 * 120.05636 * 180.30501 * 14 13 12 36 36 H 0.97001 * 120.00455 * 179.97438 * 19 18 16 37 37 H 1.07998 * 120.05978 * 179.97438 * 24 15 14 38 38 H 1.08001 * 119.94178 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0713 -0.7796 1.2189 5 8 3.2398 -1.4704 0.7259 6 6 2.8757 -1.9430 -0.5894 7 6 2.0715 -0.7830 -1.2170 8 1 2.7220 -0.1495 -1.8200 9 7 0.9662 -1.3032 -2.0257 10 6 1.1522 -1.5595 -3.3358 11 8 2.2371 -1.3585 -3.8465 12 6 0.0382 -2.0833 -4.1509 13 6 -1.2089 -2.3185 -3.5594 14 6 -2.2421 -2.7967 -4.3092 15 6 -2.0502 -3.0649 -5.6789 16 6 -3.1150 -3.5655 -6.4580 17 1 -3.1269 -3.4011 -7.5253 18 6 -4.1573 -4.2766 -5.8463 19 7 -3.9932 -4.7771 -4.6508 20 14 -5.7807 -4.5083 -6.7410 21 1 -5.7729 -5.8127 -7.4508 22 1 -6.8946 -4.4857 -5.7593 23 1 -5.9650 -3.4108 -7.7242 24 6 -0.7919 -2.8321 -6.2684 25 6 0.2339 -2.3491 -5.5115 26 1 -0.3633 0.4959 0.9001 27 1 -0.3633 -1.0274 -0.0206 28 1 -0.3633 0.5316 -0.8796 29 1 2.3464 -0.0912 2.0179 30 1 1.3277 -1.4935 1.5734 31 1 3.7689 -2.1483 -1.1796 32 1 2.2564 -2.8367 -0.5135 33 1 0.1005 -1.4632 -1.6183 34 1 -1.3539 -2.1161 -2.5085 35 1 -3.2051 -2.9732 -3.8532 36 1 -4.7143 -5.2687 -4.2275 37 1 -0.6400 -3.0366 -7.3179 38 1 1.1989 -2.1707 -5.9623 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928900711.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:40 Heat of formation + Delta-G solvation = -84.909050 kcal Electronic energy + Delta-G solvation = -20818.780751 eV Core-core repulsion = 17624.791955 eV Total energy + Delta-G solvation = -3193.988796 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.43181 -40.05368 -38.78151 -36.01460 -35.67509 -33.40587 -32.03375 -31.30906 -29.84127 -27.56949 -27.26013 -24.34978 -23.46419 -22.79238 -21.60802 -20.77891 -19.37357 -18.75399 -17.58844 -17.11434 -17.06131 -16.44488 -16.13736 -15.75366 -15.74938 -15.19977 -15.02360 -14.54633 -14.47688 -13.96559 -13.74992 -13.58928 -13.35287 -13.31268 -13.00073 -12.84306 -12.66591 -12.36835 -12.10707 -11.95708 -11.79532 -11.70243 -11.37863 -11.12277 -10.89071 -10.74423 -10.09820 -9.58485 -9.41776 -8.80213 -6.49025 0.42468 1.14298 1.38786 1.42505 1.55217 2.09653 2.17789 2.24484 2.76707 3.06180 3.40691 3.67002 3.75815 3.84597 4.11238 4.18702 4.24737 4.29564 4.43582 4.44704 4.63230 4.67231 4.80666 4.80775 4.91582 4.96054 5.02581 5.11858 5.14812 5.25565 5.29058 5.45068 5.57958 5.77390 5.81521 5.93244 5.98600 6.22119 6.53048 6.65791 6.76505 6.87984 7.40354 8.15206 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029748 B = 0.003916 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.001485 B = 7148.510115 C = 7707.572311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 H 0.104 0.896 4 C 0.045 3.955 5 O -0.389 6.389 6 C 0.038 3.962 7 C 0.113 3.887 8 H 0.083 0.917 9 N -0.715 5.715 10 C 0.572 3.428 11 O -0.603 6.603 12 C -0.295 4.295 13 C -0.052 4.052 14 C -0.197 4.197 15 C 0.102 3.898 16 C -0.474 4.474 17 H 0.085 0.915 18 C 0.040 3.960 19 N -0.797 5.797 20 Si 0.986 3.014 21 H -0.262 1.262 22 H -0.261 1.261 23 H -0.257 1.257 24 C -0.253 4.253 25 C -0.032 4.032 26 H 0.089 0.911 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.410 0.590 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.297 0.703 37 H 0.103 0.897 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.774 5.638 10.889 12.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 H 0.123 0.877 4 C -0.031 4.031 5 O -0.307 6.307 6 C -0.041 4.041 7 C 0.007 3.993 8 H 0.101 0.899 9 N -0.370 5.370 10 C 0.366 3.634 11 O -0.488 6.488 12 C -0.299 4.299 13 C -0.071 4.071 14 C -0.216 4.216 15 C 0.099 3.901 16 C -0.501 4.501 17 H 0.103 0.897 18 C -0.179 4.179 19 N -0.421 5.421 20 Si 0.806 3.194 21 H -0.187 1.187 22 H -0.185 1.185 23 H -0.181 1.181 24 C -0.273 4.273 25 C -0.052 4.052 26 H 0.108 0.892 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.135 0.865 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.251 0.749 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.109 0.891 37 H 0.122 0.878 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.624 5.602 10.884 12.349 hybrid contribution -0.923 -0.446 -0.610 1.194 sum 0.701 5.156 10.274 11.516 Atomic orbital electron populations 1.21799 0.92793 1.02408 1.03693 1.22774 0.97992 1.00772 0.92872 0.87731 1.23755 0.87542 0.95478 0.96372 1.89118 1.36607 1.74238 1.30763 1.23793 0.99871 0.96585 0.83827 1.22280 0.88877 0.95293 0.92836 0.89863 1.45983 1.15235 1.67322 1.08503 1.18467 0.87225 0.75703 0.82039 1.90618 1.28288 1.56529 1.73329 1.19158 0.95061 1.20814 0.94898 1.20692 0.91875 0.96202 0.98364 1.21007 0.99125 1.06388 0.95083 1.18137 0.91689 0.87105 0.93183 1.20130 1.04247 1.29314 0.96393 0.89690 1.26899 1.03375 0.92189 0.95476 1.69751 1.34794 1.22553 1.14982 0.85122 0.75537 0.79748 0.79011 1.18670 1.18491 1.18105 1.20858 0.93710 1.13040 0.99643 1.20515 0.97376 0.94160 0.93118 0.89246 0.92178 0.92258 0.86506 0.90943 0.89554 0.91884 0.74898 0.85991 0.86762 0.89126 0.87841 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 7.83 71.98 0.56 -1.88 16 2 C -0.12 -2.34 3.72 -9.78 -0.04 -2.38 16 3 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 4 C 0.04 0.79 7.19 72.49 0.52 1.31 16 5 O -0.39 -9.82 11.65 -148.98 -1.74 -11.56 16 6 C 0.04 1.02 7.35 72.49 0.53 1.55 16 7 C 0.11 3.06 3.46 46.01 0.16 3.22 16 8 H 0.08 2.58 7.55 -2.39 -0.02 2.56 16 9 N -0.71 -22.25 4.57 -440.77 -2.01 -24.26 16 10 C 0.57 23.56 7.76 86.73 0.67 24.23 16 11 O -0.60 -28.33 15.97 -3.98 -0.06 -28.39 16 12 C -0.29 -13.22 5.89 -19.93 -0.12 -13.34 16 13 C -0.05 -2.23 9.47 22.25 0.21 -2.02 16 14 C -0.20 -9.50 8.63 22.47 0.19 -9.31 16 15 C 0.10 5.23 5.57 -21.28 -0.12 5.11 16 16 C -0.47 -23.62 9.04 23.46 0.21 -23.41 16 17 H 0.09 4.07 7.91 -2.91 -0.02 4.05 16 18 C 0.04 1.82 5.13 85.35 0.44 2.25 16 19 N -0.80 -37.36 10.97 21.87 0.24 -37.12 16 20 Si 0.99 34.08 29.60 68.60 2.03 36.12 16 21 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 22 H -0.26 -8.47 7.11 99.48 0.71 -7.76 16 23 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 24 C -0.25 -12.45 9.73 22.47 0.22 -12.23 16 25 C -0.03 -1.55 9.52 22.25 0.21 -1.34 16 26 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 0.99 6.75 -2.39 -0.02 0.97 16 28 H 0.06 1.11 7.98 -2.39 -0.02 1.09 16 29 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 1.14 7.87 -2.39 -0.02 1.12 16 31 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 32 H 0.06 1.72 8.06 -2.39 -0.02 1.70 16 33 H 0.41 11.09 3.90 -92.71 -0.36 10.72 16 34 H 0.12 4.19 6.37 -2.91 -0.02 4.17 16 35 H 0.11 5.58 6.17 -2.91 -0.02 5.56 16 36 H 0.30 12.33 8.29 -92.71 -0.77 11.56 16 37 H 0.10 4.80 8.06 -2.91 -0.02 4.77 16 38 H 0.10 4.75 7.63 -2.91 -0.02 4.72 16 Total: -1.00 -60.60 313.49 2.84 -57.76 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: 0.72 Total: 35.69 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 3.66 Total: -28.23 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -1.77 Total: -61.39 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -1.80 Total: -39.95 kcal Atomic # 14 Polarization: 34.08 SS G_CDS: 2.03 Total: 36.12 kcal Total: -60.60 2.84 -57.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928900711.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.145 kcal (2) G-P(sol) polarization free energy of solvation -60.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds