Wall clock time and date at job start Mon Mar 30 2020 02:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 108.05867 * 2 1 4 4 C 1.45735 * 108.30755 * 117.12514 * 2 1 3 5 5 S 1.83502 * 109.65515 * 186.00818 * 4 2 1 6 6 O 1.42097 * 108.59443 * 177.08643 * 5 4 2 7 7 O 1.42106 * 108.60610 * 46.00921 * 5 4 2 8 8 C 1.80066 * 101.81819 * 291.54815 * 5 4 2 9 9 C 1.53841 * 112.96229 * 85.66725 * 8 5 4 10 10 C 1.52908 * 115.30344 * 316.12312 * 9 8 5 11 11 N 1.45592 * 109.23585 * 318.38661 * 10 9 8 12 12 C 1.46899 * 110.99905 * 226.09720 * 11 10 9 13 13 C 1.52997 * 109.47254 * 66.04533 * 12 11 10 14 14 C 1.52992 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47592 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00057 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00356 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99989 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00117 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46778 * 60.00380 * 19 17 15 21 21 H 1.48503 * 109.47134 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47402 * 300.00322 * 19 17 15 23 23 H 1.09007 * 109.46700 * 177.12829 * 1 2 3 24 24 H 1.08993 * 109.47233 * 297.13240 * 1 2 3 25 25 H 1.09001 * 109.46545 * 57.13468 * 1 2 3 26 26 H 1.09000 * 109.44046 * 65.95146 * 4 2 1 27 27 H 1.08999 * 109.41064 * 306.03812 * 4 2 1 28 28 H 1.09005 * 108.78195 * 324.76921 * 8 5 4 29 29 H 1.09002 * 108.78426 * 206.56989 * 8 5 4 30 30 H 1.09002 * 108.31779 * 194.61102 * 9 8 5 31 31 H 1.09006 * 108.17039 * 77.52169 * 9 8 5 32 32 H 1.09000 * 109.50952 * 198.45757 * 10 9 8 33 33 H 1.09003 * 109.54950 * 78.33915 * 10 9 8 34 34 H 1.09002 * 109.47043 * 186.04604 * 12 11 10 35 35 H 1.09001 * 109.47354 * 306.04666 * 12 11 10 36 36 H 1.09002 * 109.47153 * 300.00004 * 13 12 11 37 37 H 1.08998 * 109.47533 * 59.99633 * 13 12 11 38 38 H 1.09002 * 109.47103 * 300.00247 * 14 13 12 39 39 H 1.09001 * 109.47066 * 60.00169 * 14 13 12 40 40 H 0.96996 * 119.99885 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8680 1.0363 0.0000 4 6 1.9878 -0.6308 1.2314 5 16 3.8133 -0.4909 1.3549 6 8 4.2280 -1.0516 2.5930 7 8 4.1885 0.8422 1.0364 8 6 4.3572 -1.5740 0.0232 9 6 4.4135 -0.8658 -1.3413 10 6 3.2166 0.0298 -1.6627 11 7 1.9922 -0.6369 -1.2429 12 6 0.9641 -0.5573 -2.2891 13 6 1.4158 -1.3608 -3.5102 14 6 0.3448 -1.2785 -4.5996 15 6 0.7899 -2.0694 -5.8026 16 1 1.7415 -2.5802 -5.7912 17 6 -0.0179 -2.1419 -6.9176 18 7 -1.1769 -1.5204 -6.9314 19 14 0.5342 -3.1218 -8.4090 20 1 0.7385 -4.5406 -8.0211 21 1 -0.5054 -3.0419 -9.4664 22 1 1.8088 -2.5614 -8.9254 23 1 -0.3633 -1.0265 -0.0515 24 1 -0.3633 0.4686 0.9145 25 1 -0.3632 0.5577 -0.8632 26 1 1.7041 -1.6832 1.2271 27 1 1.5274 -0.1344 2.0856 28 1 3.6694 -2.4167 -0.0468 29 1 5.3505 -1.9536 0.2630 30 1 4.4912 -1.6258 -2.1188 31 1 5.3159 -0.2550 -1.3703 32 1 3.1796 0.2168 -2.7359 33 1 3.3162 0.9764 -1.1315 34 1 0.0279 -0.9673 -1.9104 35 1 0.8157 0.4843 -2.5742 36 1 2.3521 -0.9508 -3.8889 37 1 1.5643 -2.4024 -3.2252 38 1 -0.5913 -1.6887 -4.2206 39 1 0.1960 -0.2370 -4.8848 40 1 -1.7451 -1.5711 -7.7159 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933312660.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:12 Heat of formation + Delta-G solvation = -66.254239 kcal Electronic energy + Delta-G solvation = -20386.853685 eV Core-core repulsion = 17329.117774 eV Total energy + Delta-G solvation = -3057.735911 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.54282 -37.02349 -36.11108 -34.46554 -34.16644 -32.50079 -30.50538 -28.30978 -26.81908 -25.83126 -23.00220 -21.66291 -20.47610 -19.73796 -18.80144 -17.08288 -17.05258 -16.34092 -16.04987 -15.31715 -15.18455 -14.83387 -14.48407 -14.36990 -13.79241 -13.39570 -12.77828 -12.56037 -12.51307 -12.43933 -12.19901 -12.10296 -12.00234 -11.80016 -11.52896 -11.39098 -11.21006 -10.93878 -10.82650 -10.57778 -10.52443 -10.37563 -10.16458 -9.68004 -9.39974 -9.11814 -8.39080 -8.37469 -6.03138 -4.05449 -0.06594 2.58011 3.30965 3.35665 3.37826 3.51743 3.70409 3.94060 4.43513 4.50459 4.58607 4.63369 4.78440 4.83227 5.08291 5.24738 5.32490 5.32961 5.42014 5.51248 5.58666 5.68336 5.71105 5.85469 5.91133 5.98316 6.05533 6.08628 6.24942 6.60495 6.66095 6.99326 7.14290 7.19614 7.63531 7.77654 7.96647 8.39542 9.01433 9.58857 11.08206 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.034292 B = 0.003974 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.321630 B = 7043.294769 C = 7526.112401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.070 3.930 3 H 0.067 0.933 4 C -0.570 4.570 5 S 2.406 3.594 6 O -0.954 6.954 7 O -0.941 6.941 8 C -0.595 4.595 9 C -0.081 4.081 10 C 0.010 3.990 11 N -0.527 5.527 12 C 0.049 3.951 13 C -0.107 4.107 14 C 0.022 3.978 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.138 0.862 29 H 0.127 0.873 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.036 0.964 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.015 0.985 39 H 0.014 0.986 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.065 2.405 15.929 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.039 4.039 3 H 0.084 0.916 4 C -0.700 4.700 5 S 2.591 3.409 6 O -0.951 6.951 7 O -0.938 6.938 8 C -0.725 4.725 9 C -0.121 4.121 10 C -0.119 4.119 11 N -0.252 5.252 12 C -0.077 4.077 13 C -0.145 4.145 14 C -0.015 4.015 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.088 0.912 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.156 0.844 27 H 0.152 0.848 28 H 0.156 0.844 29 H 0.145 0.855 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.542 2.415 16.518 18.318 hybrid contribution -0.424 -0.353 -1.509 1.607 sum 7.118 2.062 15.009 16.738 Atomic orbital electron populations 1.22275 0.93564 1.03233 1.02429 1.20111 0.97677 0.96710 0.89388 0.91562 1.28954 1.24668 1.11342 1.05046 1.08339 0.79322 0.76721 0.76529 1.93572 1.80567 1.80274 1.40678 1.93549 1.80929 1.34252 1.85077 1.30061 1.12117 1.16275 1.14081 1.21104 0.98398 0.99204 0.93352 1.22709 0.89489 0.96093 1.03589 1.62585 1.05479 1.53308 1.03783 1.22604 0.94355 0.99426 0.91346 1.21720 1.00201 0.98871 0.93727 1.19058 0.93352 0.97057 0.92042 1.21192 1.04092 1.31233 0.99311 0.92775 1.25016 0.94962 0.95737 0.98686 1.69949 1.10625 1.43221 1.29756 0.86668 0.78287 0.80637 0.82458 1.20248 1.21301 1.20268 0.91161 0.92387 0.91157 0.84415 0.84757 0.84385 0.85515 0.89997 0.91086 0.88922 0.90989 0.89858 0.94569 0.93312 0.92555 0.96614 0.96793 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 7.69 37.16 0.29 -1.31 16 2 C 0.07 0.75 2.09 -71.03 -0.15 0.60 16 3 H 0.07 0.71 6.39 -51.93 -0.33 0.38 16 4 C -0.57 -4.90 5.38 33.72 0.18 -4.71 16 5 S 2.41 24.65 5.17 -107.50 -0.56 24.09 16 6 O -0.95 -12.66 18.10 -57.83 -1.05 -13.71 16 7 O -0.94 -12.29 15.51 -57.83 -0.90 -13.19 16 8 C -0.59 -5.38 5.70 37.60 0.21 -5.17 16 9 C -0.08 -0.86 5.60 -26.34 -0.15 -1.00 16 10 C 0.01 0.12 4.89 -4.58 -0.02 0.10 16 11 N -0.53 -6.57 4.10 -231.80 -0.95 -7.52 16 12 C 0.05 0.75 3.51 -3.83 -0.01 0.73 16 13 C -0.11 -2.04 5.11 -26.74 -0.14 -2.17 16 14 C 0.02 0.55 4.97 -27.89 -0.14 0.42 16 15 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 16 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.45 13.29 55.43 0.74 -25.72 16 19 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H 0.07 0.73 7.48 -51.92 -0.39 0.34 16 24 H 0.06 0.49 8.01 -51.93 -0.42 0.07 16 25 H 0.07 0.77 6.43 -51.93 -0.33 0.44 16 26 H 0.14 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.13 0.90 7.99 -51.93 -0.41 0.48 16 28 H 0.14 1.12 8.08 -51.72 -0.42 0.70 16 29 H 0.13 0.94 8.14 -51.73 -0.42 0.52 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.21 6.00 -51.93 -0.31 0.90 16 33 H 0.07 0.85 5.43 -51.93 -0.28 0.57 16 34 H 0.08 1.24 5.77 -51.93 -0.30 0.94 16 35 H 0.04 0.56 7.81 -51.93 -0.41 0.15 16 36 H 0.05 0.91 6.48 -51.93 -0.34 0.57 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 315.45 15.07 4.75 4.75 Total: -1.00 -33.60 315.45 -9.75 -43.35 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.44 Total: -2.69 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: -0.34 Total: -25.66 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: -0.21 Total: -33.24 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -1.94 Total: -26.90 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 24.65 SS G_CDS: -0.56 Total: 24.09 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.60 -9.75 -43.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933312660.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.901 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds