Wall clock time and date at job start Mon Mar 30 2020 02:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 108.05867 * 2 1 4 4 C 1.45735 * 108.30755 * 117.12514 * 2 1 3 5 5 S 1.83502 * 109.65515 * 186.00818 * 4 2 1 6 6 O 1.42097 * 108.59443 * 177.08643 * 5 4 2 7 7 O 1.42106 * 108.60610 * 46.00921 * 5 4 2 8 8 C 1.80066 * 101.81819 * 291.54815 * 5 4 2 9 9 C 1.53841 * 112.96229 * 85.66725 * 8 5 4 10 10 C 1.52908 * 115.30344 * 316.12312 * 9 8 5 11 11 N 1.45592 * 109.23585 * 318.38661 * 10 9 8 12 12 C 1.46899 * 110.99905 * 226.09720 * 11 10 9 13 13 C 1.52997 * 109.47254 * 66.04533 * 12 11 10 14 14 C 1.52992 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47592 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00057 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00356 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99989 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00117 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46778 * 60.00380 * 19 17 15 21 21 H 1.48503 * 109.47134 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47402 * 300.00322 * 19 17 15 23 23 H 1.09007 * 109.46700 * 177.12829 * 1 2 3 24 24 H 1.08993 * 109.47233 * 297.13240 * 1 2 3 25 25 H 1.09001 * 109.46545 * 57.13468 * 1 2 3 26 26 H 1.09000 * 109.44046 * 65.95146 * 4 2 1 27 27 H 1.08999 * 109.41064 * 306.03812 * 4 2 1 28 28 H 1.09005 * 108.78195 * 324.76921 * 8 5 4 29 29 H 1.09002 * 108.78426 * 206.56989 * 8 5 4 30 30 H 1.09002 * 108.31779 * 194.61102 * 9 8 5 31 31 H 1.09006 * 108.17039 * 77.52169 * 9 8 5 32 32 H 1.09000 * 109.50952 * 198.45757 * 10 9 8 33 33 H 1.09003 * 109.54950 * 78.33915 * 10 9 8 34 34 H 1.09002 * 109.47043 * 186.04604 * 12 11 10 35 35 H 1.09001 * 109.47354 * 306.04666 * 12 11 10 36 36 H 1.09002 * 109.47153 * 300.00004 * 13 12 11 37 37 H 1.08998 * 109.47533 * 59.99633 * 13 12 11 38 38 H 1.09002 * 109.47103 * 300.00247 * 14 13 12 39 39 H 1.09001 * 109.47066 * 60.00169 * 14 13 12 40 40 H 0.96996 * 119.99885 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8680 1.0363 0.0000 4 6 1.9878 -0.6308 1.2314 5 16 3.8133 -0.4909 1.3549 6 8 4.2280 -1.0516 2.5930 7 8 4.1885 0.8422 1.0364 8 6 4.3572 -1.5740 0.0232 9 6 4.4135 -0.8658 -1.3413 10 6 3.2166 0.0298 -1.6627 11 7 1.9922 -0.6369 -1.2429 12 6 0.9641 -0.5573 -2.2891 13 6 1.4158 -1.3608 -3.5102 14 6 0.3448 -1.2785 -4.5996 15 6 0.7899 -2.0694 -5.8026 16 1 1.7415 -2.5802 -5.7912 17 6 -0.0179 -2.1419 -6.9176 18 7 -1.1769 -1.5204 -6.9314 19 14 0.5342 -3.1218 -8.4090 20 1 0.7385 -4.5406 -8.0211 21 1 -0.5054 -3.0419 -9.4664 22 1 1.8088 -2.5614 -8.9254 23 1 -0.3633 -1.0265 -0.0515 24 1 -0.3633 0.4686 0.9145 25 1 -0.3632 0.5577 -0.8632 26 1 1.7041 -1.6832 1.2271 27 1 1.5274 -0.1344 2.0856 28 1 3.6694 -2.4167 -0.0468 29 1 5.3505 -1.9536 0.2630 30 1 4.4912 -1.6258 -2.1188 31 1 5.3159 -0.2550 -1.3703 32 1 3.1796 0.2168 -2.7359 33 1 3.3162 0.9764 -1.1315 34 1 0.0279 -0.9673 -1.9104 35 1 0.8157 0.4843 -2.5742 36 1 2.3521 -0.9508 -3.8889 37 1 1.5643 -2.4024 -3.2252 38 1 -0.5913 -1.6887 -4.2206 39 1 0.1960 -0.2370 -4.8848 40 1 -1.7451 -1.5711 -7.7159 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933312660.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:12 Heat of formation + Delta-G solvation = -90.588716 kcal Electronic energy + Delta-G solvation = -20387.908907 eV Core-core repulsion = 17329.117774 eV Total energy + Delta-G solvation = -3058.791133 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.52383 -37.94105 -37.01559 -36.03646 -35.13200 -34.13111 -31.90723 -29.26447 -28.08793 -27.07737 -24.61979 -22.55245 -21.95386 -20.85993 -19.64031 -18.44060 -17.93135 -17.89405 -16.94821 -16.55282 -16.23266 -16.06105 -15.79093 -15.71766 -14.67532 -14.36075 -14.28945 -13.82112 -13.61556 -13.35184 -13.25982 -13.17054 -13.12237 -12.98580 -12.91909 -12.62092 -12.46499 -12.32925 -12.13272 -12.02593 -11.75347 -11.46957 -11.33879 -11.13729 -11.05721 -10.98574 -10.51438 -9.42999 -8.17972 -6.28124 -0.85175 1.41529 1.43668 1.51534 1.82571 2.42040 2.69594 2.81678 3.09372 3.15741 3.71079 3.77569 3.88975 3.97453 4.07857 4.21424 4.28453 4.37278 4.47808 4.58277 4.71168 4.74553 4.77275 4.81649 4.93713 5.01670 5.08399 5.12937 5.16797 5.26029 5.29224 5.34056 5.55910 5.79775 5.90144 6.00952 6.06500 6.29914 6.89316 7.41100 8.93537 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.034292 B = 0.003974 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.321630 B = 7043.294769 C = 7526.112401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.066 3.934 3 H 0.066 0.934 4 C -0.560 4.560 5 S 2.414 3.586 6 O -0.986 6.986 7 O -0.974 6.974 8 C -0.590 4.590 9 C -0.084 4.084 10 C 0.005 3.995 11 N -0.522 5.522 12 C 0.061 3.939 13 C -0.093 4.093 14 C 0.025 3.975 15 C -0.541 4.541 16 H 0.059 0.941 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.960 3.040 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.268 1.268 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.159 0.841 27 H 0.160 0.840 28 H 0.152 0.848 29 H 0.145 0.855 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.030 0.970 36 H 0.051 0.949 37 H 0.056 0.944 38 H -0.007 1.007 39 H -0.011 1.011 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.722 1.414 16.572 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.043 4.043 3 H 0.083 0.917 4 C -0.691 4.691 5 S 2.602 3.398 6 O -0.983 6.983 7 O -0.971 6.971 8 C -0.721 4.721 9 C -0.123 4.123 10 C -0.124 4.124 11 N -0.247 5.247 12 C -0.067 4.067 13 C -0.131 4.131 14 C -0.012 4.012 15 C -0.579 4.579 16 H 0.077 0.923 17 C -0.197 4.197 18 N -0.574 5.574 19 Si 0.785 3.215 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.193 1.193 23 H 0.089 0.911 24 H 0.098 0.902 25 H 0.075 0.925 26 H 0.177 0.823 27 H 0.178 0.822 28 H 0.171 0.829 29 H 0.164 0.836 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.012 0.988 39 H 0.007 0.993 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.234 1.434 17.190 19.115 hybrid contribution -0.665 -0.017 -1.711 1.836 sum 7.570 1.417 15.479 17.289 Atomic orbital electron populations 1.22286 0.92996 1.03314 1.03066 1.20205 0.98180 0.96828 0.89065 0.91660 1.28875 1.22454 1.12996 1.04780 1.07940 0.79966 0.75882 0.76004 1.93532 1.81656 1.80574 1.42539 1.93505 1.82012 1.36191 1.85403 1.29998 1.13805 1.16028 1.12296 1.21102 0.97907 0.99162 0.94164 1.22769 0.89998 0.96758 1.02837 1.62546 1.04734 1.53766 1.03649 1.22330 0.95193 0.98318 0.90815 1.21458 0.98310 0.99618 0.93668 1.18964 0.94171 0.94846 0.93236 1.21672 1.04309 1.31402 1.00475 0.92301 1.25929 0.94976 0.96807 1.01971 1.70082 1.11864 1.44704 1.30735 0.85571 0.78040 0.79357 0.78505 1.19204 1.21008 1.19308 0.91117 0.90158 0.92482 0.82309 0.82249 0.82948 0.83647 0.90125 0.90185 0.90260 0.90807 0.89431 0.95137 0.93065 0.92550 0.98825 0.99261 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 7.69 71.98 0.55 -2.33 16 2 C 0.07 1.27 2.09 42.65 0.09 1.36 16 3 H 0.07 1.30 6.39 -2.39 -0.02 1.28 16 4 C -0.56 -7.98 5.38 69.76 0.38 -7.60 16 5 S 2.41 45.13 5.17 -56.49 -0.29 44.83 16 6 O -0.99 -24.71 18.10 -127.38 -2.31 -27.01 16 7 O -0.97 -24.44 15.51 -127.38 -1.98 -26.42 16 8 C -0.59 -9.29 5.70 72.27 0.41 -8.88 16 9 C -0.08 -1.63 5.60 30.85 0.17 -1.46 16 10 C 0.00 0.11 4.89 86.52 0.42 0.54 16 11 N -0.52 -12.23 4.10 -887.27 -3.64 -15.87 16 12 C 0.06 1.81 3.51 86.30 0.30 2.11 16 13 C -0.09 -3.51 5.11 30.59 0.16 -3.35 16 14 C 0.03 1.29 4.97 29.84 0.15 1.43 16 15 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 16 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 17 C 0.00 0.05 5.46 84.65 0.46 0.51 16 18 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16 19 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 23 H 0.07 1.30 7.48 -2.38 -0.02 1.28 16 24 H 0.08 1.11 8.01 -2.39 -0.02 1.09 16 25 H 0.06 1.20 6.43 -2.39 -0.02 1.18 16 26 H 0.16 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.16 1.55 7.99 -2.39 -0.02 1.53 16 28 H 0.15 1.99 8.08 -2.51 -0.02 1.97 16 29 H 0.15 1.78 8.14 -2.51 -0.02 1.76 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.08 2.05 6.00 -2.39 -0.01 2.03 16 33 H 0.07 1.69 5.43 -2.39 -0.01 1.68 16 34 H 0.09 2.55 5.77 -2.39 -0.01 2.54 16 35 H 0.03 0.94 7.81 -2.39 -0.02 0.92 16 36 H 0.05 1.90 6.48 -2.39 -0.02 1.88 16 37 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 38 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 39 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 40 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -72.22 315.45 -1.56 -73.79 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.01 Total: 8.23 kcal Atomic # 6 Polarization: -50.76 SS G_CDS: 3.33 Total: -47.43 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: -3.35 Total: -71.54 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -4.28 Total: -53.43 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 45.13 SS G_CDS: -0.29 Total: 44.83 kcal Total: -72.22 -1.56 -73.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933312660.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.800 kcal (2) G-P(sol) polarization free energy of solvation -72.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds