Wall clock time and date at job start Mon Mar 30 2020 01:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33091 * 1 3 3 C 1.46931 * 120.00108 * 2 1 4 4 O 1.21544 * 120.00244 * 359.97438 * 3 2 1 5 5 O 1.34791 * 119.99948 * 179.97438 * 3 2 1 6 6 C 1.35983 * 117.00044 * 185.76147 * 5 3 2 7 7 C 1.38722 * 119.98766 * 249.05754 * 6 5 3 8 8 C 1.38083 * 120.02185 * 180.02562 * 7 6 5 9 9 C 1.38885 * 119.97838 * 359.97438 * 8 7 6 10 10 N 1.39877 * 120.01871 * 180.02562 * 9 8 7 11 11 C 1.46498 * 120.00015 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.46994 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47058 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46891 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00134 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99594 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00247 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99616 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46905 * 90.00656 * 18 16 14 20 20 H 1.48511 * 109.46946 * 210.00425 * 18 16 14 21 21 H 1.48491 * 109.47310 * 330.00261 * 18 16 14 22 22 C 1.38889 * 119.96593 * 0.27695 * 9 8 7 23 23 C 1.38080 * 119.97502 * 359.46640 * 22 9 8 24 24 H 1.08002 * 119.99677 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.00099 * 180.02562 * 1 2 3 26 26 H 1.08007 * 119.99587 * 179.97438 * 2 1 3 27 27 H 1.08000 * 119.98975 * 0.02562 * 7 6 5 28 28 H 1.08001 * 120.01064 * 179.97438 * 8 7 6 29 29 H 0.97001 * 119.99628 * 0.02562 * 10 9 8 30 30 H 1.08998 * 109.47088 * 300.00187 * 11 10 9 31 31 H 1.09007 * 109.46652 * 60.00383 * 11 10 9 32 32 H 1.09002 * 109.47283 * 300.00569 * 12 11 10 33 33 H 1.09001 * 109.46376 * 60.00333 * 12 11 10 34 34 H 1.08998 * 109.46984 * 300.00391 * 13 12 11 35 35 H 1.08993 * 109.46881 * 60.00379 * 13 12 11 36 36 H 0.96998 * 119.99928 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.00958 * 179.70389 * 22 9 8 38 38 H 1.08004 * 119.98831 * 180.23114 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3309 0.0000 0.0000 3 6 2.0656 1.2724 0.0000 4 8 1.4579 2.3251 -0.0005 5 8 3.4135 1.2724 0.0005 6 6 4.0308 2.4779 0.1221 7 6 4.7287 3.0110 -0.9518 8 6 5.3563 4.2348 -0.8289 9 6 5.2882 4.9323 0.3702 10 7 5.9232 6.1723 0.4954 11 6 5.8507 6.9080 1.7602 12 6 6.6233 8.2222 1.6307 13 6 6.5481 8.9903 2.9518 14 6 7.3087 10.2850 2.8241 15 1 7.7965 10.5352 1.8937 16 6 7.3808 11.1506 3.8949 17 7 6.7864 10.8461 5.0279 18 14 8.3241 12.7552 3.7368 19 1 7.4097 13.8215 3.2553 20 1 8.8762 13.1374 5.0615 21 1 9.4364 12.5822 2.7683 22 6 4.5937 4.3955 1.4465 23 6 3.9623 3.1741 1.3202 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8709 -0.9354 0.0004 27 1 4.7812 2.4686 -1.8842 28 1 5.8999 4.6494 -1.6649 29 1 6.4109 6.5455 -0.2555 30 1 4.8083 7.1207 1.9975 31 1 6.2891 6.3061 2.5562 32 1 7.6657 8.0091 1.3935 33 1 6.1853 8.8242 0.8346 34 1 5.5059 9.2033 3.1894 35 1 6.9864 8.3881 3.7476 36 1 6.8375 11.4549 5.7813 37 1 4.5444 4.9351 2.3808 38 1 3.4191 2.7582 2.1559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168437162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:44 Heat of formation + Delta-G solvation = -40.800652 kcal Electronic energy + Delta-G solvation = -19449.327874 eV Core-core repulsion = 16257.251762 eV Total energy + Delta-G solvation = -3192.076112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.19909 -39.10461 -37.25951 -35.61326 -33.57113 -33.37003 -31.50168 -30.98539 -28.65932 -26.36929 -24.86023 -23.63358 -22.49992 -21.35105 -20.37506 -20.13005 -18.48750 -17.48659 -17.01183 -16.62199 -16.20801 -15.10862 -14.87978 -14.78360 -14.50857 -14.40632 -14.05696 -13.78510 -13.41437 -13.05263 -12.59721 -12.34770 -12.25370 -11.99763 -11.76760 -11.68058 -10.97839 -10.89354 -10.76686 -10.59504 -10.54971 -10.36604 -10.03202 -9.62237 -9.51063 -9.16601 -8.99225 -8.40496 -7.25327 -6.05321 -4.08266 0.77433 1.33917 1.39775 2.69116 2.74357 3.28934 3.35292 3.38174 3.62304 3.86113 4.41974 4.52200 4.67445 4.85119 4.91574 5.06563 5.30676 5.32837 5.44420 5.51283 5.62145 5.68730 5.71195 5.85051 5.95474 6.05978 6.07450 6.31882 6.40841 6.46403 6.54266 6.58536 6.82841 6.93770 7.42873 7.58722 7.71093 7.74476 7.87668 7.93194 8.34792 8.98190 9.56162 11.05989 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.043722 B = 0.002435 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.252253 B =11494.314188 C =11902.910719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.188 4.188 3 C 0.479 3.521 4 O -0.494 6.494 5 O -0.283 6.283 6 C 0.004 3.996 7 C -0.065 4.065 8 C -0.191 4.191 9 C 0.231 3.769 10 N -0.738 5.738 11 C 0.118 3.882 12 C -0.120 4.120 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.185 4.185 23 C -0.068 4.068 24 H 0.117 0.883 25 H 0.126 0.874 26 H 0.141 0.859 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.400 0.600 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.018 0.982 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.131 0.869 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.706 -22.121 -11.030 26.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.207 4.207 3 C 0.325 3.675 4 O -0.381 6.381 5 O -0.198 6.198 6 C -0.039 4.039 7 C -0.084 4.084 8 C -0.214 4.214 9 C 0.124 3.876 10 N -0.365 5.365 11 C -0.006 4.006 12 C -0.158 4.158 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.208 4.208 23 C -0.087 4.087 24 H 0.135 0.865 25 H 0.144 0.856 26 H 0.158 0.842 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.234 0.766 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.149 0.851 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.905 -21.584 -10.653 25.665 hybrid contribution 0.684 1.112 -0.204 1.321 sum -8.221 -20.472 -10.858 24.588 Atomic orbital electron populations 1.24928 0.94878 1.04061 0.88319 1.22118 0.95270 0.95352 1.07938 1.22125 0.81468 0.90647 0.73235 1.90895 1.68811 1.33930 1.44478 1.84730 1.20480 1.31674 1.82945 1.18158 1.02912 0.87861 0.94990 1.20692 0.96738 0.94157 0.96780 1.20417 1.07466 0.96187 0.97332 1.18018 0.90383 0.85859 0.93323 1.45142 1.56970 1.18291 1.16069 1.21676 1.00679 0.93582 0.84615 1.21854 0.98524 0.93315 1.02132 1.19029 0.97515 0.94406 0.90395 1.21201 1.32973 1.03673 0.98244 0.92653 1.25032 0.95712 0.98396 0.95353 1.69958 1.43756 1.36956 1.02656 0.86571 0.80145 0.83754 0.77392 1.20632 1.21173 1.19888 1.20564 1.03832 0.97118 0.99251 1.20963 0.97540 0.94043 0.96195 0.86508 0.85604 0.84163 0.85554 0.85463 0.76582 0.92354 0.92327 0.92713 0.92729 0.96330 0.96312 0.92907 0.85068 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 14.31 28.94 0.41 -0.05 16 2 C -0.19 -1.38 10.15 -37.85 -0.38 -1.76 16 3 C 0.48 5.70 7.68 34.25 0.26 5.97 16 4 O -0.49 -7.46 15.67 -19.30 -0.30 -7.77 16 5 O -0.28 -3.58 10.05 -25.20 -0.25 -3.83 16 6 C 0.00 0.05 5.28 -39.22 -0.21 -0.15 16 7 C -0.06 -0.81 9.98 -39.46 -0.39 -1.21 16 8 C -0.19 -2.41 9.89 -39.40 -0.39 -2.80 16 9 C 0.23 3.29 6.66 -83.71 -0.56 2.73 16 10 N -0.74 -10.57 5.74 -58.59 -0.34 -10.91 16 11 C 0.12 1.94 4.91 -4.04 -0.02 1.92 16 12 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 18 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 22 C -0.18 -2.68 9.31 -39.40 -0.37 -3.04 16 23 C -0.07 -0.95 9.33 -39.46 -0.37 -1.32 16 24 H 0.12 0.78 7.49 -52.49 -0.39 0.38 16 25 H 0.13 0.27 8.06 -52.49 -0.42 -0.15 16 26 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 27 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 28 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 29 H 0.40 5.08 8.49 -40.82 -0.35 4.73 16 30 H 0.06 0.99 7.96 -51.93 -0.41 0.57 16 31 H 0.06 0.97 7.94 -51.93 -0.41 0.56 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.13 1.85 6.73 -52.49 -0.35 1.50 16 38 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 335.42 15.07 5.05 5.05 Total: -1.00 -32.40 335.42 -8.09 -40.49 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.26 Total: 1.51 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -2.70 Total: -15.10 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.40 Total: -36.82 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.56 Total: -11.60 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.40 -8.09 -40.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168437162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.310 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds