Wall clock time and date at job start Mon Mar 30 2020 01:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33091 * 1 3 3 C 1.46931 * 120.00108 * 2 1 4 4 O 1.21544 * 120.00244 * 359.97438 * 3 2 1 5 5 O 1.34791 * 119.99948 * 179.97438 * 3 2 1 6 6 C 1.35983 * 117.00044 * 185.76147 * 5 3 2 7 7 C 1.38722 * 119.98766 * 249.05754 * 6 5 3 8 8 C 1.38083 * 120.02185 * 180.02562 * 7 6 5 9 9 C 1.38885 * 119.97838 * 359.97438 * 8 7 6 10 10 N 1.39877 * 120.01871 * 180.02562 * 9 8 7 11 11 C 1.46498 * 120.00015 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.46994 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47058 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46891 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00134 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99594 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00247 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99616 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46905 * 90.00656 * 18 16 14 20 20 H 1.48511 * 109.46946 * 210.00425 * 18 16 14 21 21 H 1.48491 * 109.47310 * 330.00261 * 18 16 14 22 22 C 1.38889 * 119.96593 * 0.27695 * 9 8 7 23 23 C 1.38080 * 119.97502 * 359.46640 * 22 9 8 24 24 H 1.08002 * 119.99677 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.00099 * 180.02562 * 1 2 3 26 26 H 1.08007 * 119.99587 * 179.97438 * 2 1 3 27 27 H 1.08000 * 119.98975 * 0.02562 * 7 6 5 28 28 H 1.08001 * 120.01064 * 179.97438 * 8 7 6 29 29 H 0.97001 * 119.99628 * 0.02562 * 10 9 8 30 30 H 1.08998 * 109.47088 * 300.00187 * 11 10 9 31 31 H 1.09007 * 109.46652 * 60.00383 * 11 10 9 32 32 H 1.09002 * 109.47283 * 300.00569 * 12 11 10 33 33 H 1.09001 * 109.46376 * 60.00333 * 12 11 10 34 34 H 1.08998 * 109.46984 * 300.00391 * 13 12 11 35 35 H 1.08993 * 109.46881 * 60.00379 * 13 12 11 36 36 H 0.96998 * 119.99928 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.00958 * 179.70389 * 22 9 8 38 38 H 1.08004 * 119.98831 * 180.23114 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3309 0.0000 0.0000 3 6 2.0656 1.2724 0.0000 4 8 1.4579 2.3251 -0.0005 5 8 3.4135 1.2724 0.0005 6 6 4.0308 2.4779 0.1221 7 6 4.7287 3.0110 -0.9518 8 6 5.3563 4.2348 -0.8289 9 6 5.2882 4.9323 0.3702 10 7 5.9232 6.1723 0.4954 11 6 5.8507 6.9080 1.7602 12 6 6.6233 8.2222 1.6307 13 6 6.5481 8.9903 2.9518 14 6 7.3087 10.2850 2.8241 15 1 7.7965 10.5352 1.8937 16 6 7.3808 11.1506 3.8949 17 7 6.7864 10.8461 5.0279 18 14 8.3241 12.7552 3.7368 19 1 7.4097 13.8215 3.2553 20 1 8.8762 13.1374 5.0615 21 1 9.4364 12.5822 2.7683 22 6 4.5937 4.3955 1.4465 23 6 3.9623 3.1741 1.3202 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8709 -0.9354 0.0004 27 1 4.7812 2.4686 -1.8842 28 1 5.8999 4.6494 -1.6649 29 1 6.4109 6.5455 -0.2555 30 1 4.8083 7.1207 1.9975 31 1 6.2891 6.3061 2.5562 32 1 7.6657 8.0091 1.3935 33 1 6.1853 8.8242 0.8346 34 1 5.5059 9.2033 3.1894 35 1 6.9864 8.3881 3.7476 36 1 6.8375 11.4549 5.7813 37 1 4.5444 4.9351 2.3808 38 1 3.4191 2.7582 2.1559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168437162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:44 Heat of formation + Delta-G solvation = -59.105294 kcal Electronic energy + Delta-G solvation = -19450.121623 eV Core-core repulsion = 16257.251762 eV Total energy + Delta-G solvation = -3192.869861 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.16186 -40.15873 -38.29488 -36.96248 -35.30307 -34.06946 -33.20689 -32.04868 -30.00461 -27.93802 -25.84258 -25.08972 -23.76334 -22.45505 -21.97770 -20.94409 -19.38984 -18.56705 -18.42288 -18.00100 -17.47054 -16.53970 -16.34214 -16.22431 -15.74450 -15.17814 -14.96357 -14.79574 -14.42996 -14.37572 -14.27624 -13.79145 -13.50698 -13.30629 -12.94702 -12.87473 -12.73914 -12.52527 -12.35992 -11.88672 -11.69927 -11.58966 -11.47395 -11.20597 -10.90677 -10.85147 -10.57193 -10.03300 -8.36950 -8.21954 -6.32991 0.09395 0.33134 0.35498 1.39888 1.40918 1.51949 1.86825 1.95451 2.36882 2.47534 2.82450 3.11750 3.72780 3.81813 3.93092 4.12659 4.21191 4.24638 4.31334 4.48007 4.51278 4.58382 4.68859 4.86952 4.94103 4.96897 5.07929 5.14167 5.19975 5.26730 5.36044 5.41273 5.47793 5.49340 5.69419 5.79107 5.82112 6.18265 6.28692 6.78503 6.82905 6.85147 7.36414 8.89926 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.043722 B = 0.002435 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.252253 B =11494.314188 C =11902.910719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.209 4.209 3 C 0.475 3.525 4 O -0.537 6.537 5 O -0.285 6.285 6 C -0.007 4.007 7 C -0.068 4.068 8 C -0.183 4.183 9 C 0.216 3.784 10 N -0.735 5.735 11 C 0.133 3.867 12 C -0.103 4.103 13 C 0.025 3.975 14 C -0.543 4.543 15 H 0.062 0.938 16 C -0.003 4.003 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.262 1.262 22 C -0.200 4.200 23 C -0.081 4.081 24 H 0.101 0.899 25 H 0.169 0.831 26 H 0.169 0.831 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.409 0.591 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.060 0.940 34 H -0.006 1.006 35 H -0.004 1.004 36 H 0.264 0.736 37 H 0.126 0.874 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.553 -23.203 -12.854 27.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.227 4.227 3 C 0.324 3.676 4 O -0.428 6.428 5 O -0.200 6.200 6 C -0.050 4.050 7 C -0.087 4.087 8 C -0.206 4.206 9 C 0.110 3.890 10 N -0.363 5.363 11 C 0.009 3.991 12 C -0.141 4.141 13 C -0.013 4.013 14 C -0.581 4.581 15 H 0.081 0.919 16 C -0.200 4.200 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.186 1.186 22 C -0.223 4.223 23 C -0.100 4.100 24 H 0.119 0.881 25 H 0.186 0.814 26 H 0.186 0.814 27 H 0.170 0.830 28 H 0.172 0.828 29 H 0.246 0.754 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.012 0.988 35 H 0.014 0.986 36 H 0.072 0.928 37 H 0.144 0.856 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.746 -22.700 -12.505 27.353 hybrid contribution 0.523 1.340 0.357 1.482 sum -8.223 -21.360 -12.148 25.912 Atomic orbital electron populations 1.25287 0.94216 1.05302 0.84548 1.22297 0.95753 0.94053 1.10624 1.23044 0.80957 0.91855 0.71783 1.90873 1.69217 1.35740 1.46943 1.84737 1.21195 1.31067 1.82955 1.18434 1.03061 0.88244 0.95272 1.21024 0.95947 0.94276 0.97428 1.20710 1.06709 0.95828 0.97305 1.18162 0.90881 0.85936 0.94018 1.44852 1.57674 1.18369 1.15425 1.21291 0.99625 0.92413 0.85783 1.21565 0.99557 0.94051 0.98958 1.18932 0.95367 0.94228 0.92736 1.21679 1.33097 1.04755 0.98569 0.91940 1.26002 0.96717 1.02343 0.94985 1.70093 1.45219 1.38472 1.03529 0.85434 0.78925 0.78994 0.77617 1.19851 1.20842 1.18638 1.20639 1.04585 0.97549 0.99494 1.21077 0.97895 0.94209 0.96850 0.88108 0.81378 0.81391 0.83019 0.82778 0.75446 0.93137 0.92718 0.91933 0.92137 0.98792 0.98595 0.92758 0.85613 0.85693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 14.31 66.67 0.95 0.48 16 2 C -0.21 -2.68 10.15 23.39 0.24 -2.44 16 3 C 0.47 11.13 7.68 70.10 0.54 11.67 16 4 O -0.54 -16.53 15.67 19.69 0.31 -16.22 16 5 O -0.28 -7.05 10.05 -1.40 -0.01 -7.06 16 6 C -0.01 -0.19 5.28 22.50 0.12 -0.07 16 7 C -0.07 -1.61 9.98 22.35 0.22 -1.38 16 8 C -0.18 -4.30 9.89 22.39 0.22 -4.08 16 9 C 0.22 6.01 6.66 38.17 0.25 6.27 16 10 N -0.73 -20.43 5.74 -339.28 -1.95 -22.38 16 11 C 0.13 4.43 4.91 86.38 0.42 4.86 16 12 C -0.10 -4.01 5.27 30.59 0.16 -3.85 16 13 C 0.03 1.29 4.97 29.85 0.15 1.44 16 14 C -0.54 -30.48 9.11 25.60 0.23 -30.25 16 15 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 16 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 17 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 18 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 22 C -0.20 -5.91 9.31 22.39 0.21 -5.70 16 23 C -0.08 -2.32 9.33 22.35 0.21 -2.11 16 24 H 0.10 1.22 7.49 -2.91 -0.02 1.20 16 25 H 0.17 0.00 8.06 -2.91 -0.02 -0.03 16 26 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 27 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 28 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 29 H 0.41 9.72 8.49 -92.71 -0.79 8.93 16 30 H 0.05 1.75 7.96 -2.39 -0.02 1.74 16 31 H 0.05 1.86 7.94 -2.38 -0.02 1.84 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 34 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 36 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 37 H 0.13 3.73 6.73 -2.91 -0.02 3.71 16 38 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -71.39 335.42 5.32 -66.07 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.27 Total: 14.82 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 4.39 Total: -24.87 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -1.66 Total: -78.77 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: 0.29 Total: -23.28 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -71.39 5.32 -66.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168437162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.967 kcal (2) G-P(sol) polarization free energy of solvation -71.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds