Wall clock time and date at job start Mon Mar 30 2020 01:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50693 * 120.00217 * 2 1 4 4 O 1.45199 * 109.47121 * 135.00013 * 3 2 1 5 5 C 1.34634 * 117.00367 * 180.02562 * 4 3 2 6 6 O 1.21517 * 119.99956 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00351 * 180.02562 * 5 4 3 8 8 C 1.46496 * 119.99734 * 359.97438 * 7 5 4 9 9 C 1.50704 * 109.47243 * 270.00249 * 8 7 5 10 10 H 1.07993 * 119.99709 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00148 * 180.02562 * 9 8 7 12 12 N 1.31525 * 119.99766 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00188 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47064 * 89.99444 * 13 11 9 15 15 H 1.48495 * 109.46975 * 209.99765 * 13 11 9 16 16 H 1.48501 * 109.46922 * 329.99423 * 13 11 9 17 17 C 1.46497 * 120.00021 * 180.02562 * 7 5 4 18 18 C 1.50707 * 109.47012 * 269.99478 * 17 7 5 19 19 C 1.38238 * 119.99792 * 90.00154 * 18 17 7 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.98090 * 18 17 7 24 24 H 1.08006 * 119.99572 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.00500 * 180.02562 * 1 2 3 26 26 H 1.08006 * 119.99572 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47118 * 15.00256 * 3 2 1 28 28 H 1.08997 * 109.47182 * 254.99736 * 3 2 1 29 29 H 1.08997 * 109.47515 * 30.00540 * 8 7 5 30 30 H 1.09004 * 109.47153 * 150.00388 * 8 7 5 31 31 H 0.96996 * 119.99503 * 180.02562 * 12 11 9 32 32 H 1.09005 * 109.47643 * 149.99939 * 17 7 5 33 33 H 1.09000 * 109.47513 * 29.99103 * 17 7 5 34 34 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 35 35 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 38 38 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1439 1.2401 0.9680 5 6 3.9190 2.3338 1.0932 6 8 3.6991 3.3156 0.4118 7 7 4.9396 2.3394 1.9735 8 6 5.2050 1.1555 2.7946 9 6 4.4263 1.2516 4.0812 10 1 3.7970 2.1090 4.2687 11 6 4.5181 0.2455 5.0194 12 7 5.2850 -0.7984 4.7913 13 14 3.5523 0.3642 6.6139 14 1 2.2193 -0.2649 6.4333 15 1 4.2901 -0.3402 7.6931 16 1 3.3798 1.7923 6.9829 17 6 5.7826 3.5296 2.1100 18 6 6.9418 3.4368 1.1514 19 6 6.8245 3.9501 -0.1267 20 6 7.8880 3.8654 -1.0058 21 6 9.0689 3.2680 -0.6065 22 6 9.1844 2.7500 0.6698 23 6 8.1225 2.8388 1.5505 24 1 -0.5400 0.9354 0.0004 25 1 -0.5401 -0.9352 0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3856 2.1160 0.2660 28 1 2.4756 1.4866 -0.9926 29 1 4.9005 0.2609 2.2515 30 1 6.2705 1.0998 3.0180 31 1 5.3493 -1.5064 5.4512 32 1 6.1596 3.5928 3.1309 33 1 5.1947 4.4192 1.8840 34 1 5.9020 4.4173 -0.4385 35 1 7.7962 4.2660 -2.0045 36 1 9.8999 3.2023 -1.2933 37 1 10.1055 2.2793 0.9804 38 1 8.2144 2.4384 2.5493 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194282776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:04 Heat of formation + Delta-G solvation = -35.112092 kcal Electronic energy + Delta-G solvation = -21006.566571 eV Core-core repulsion = 17814.737134 eV Total energy + Delta-G solvation = -3191.829438 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.88258 -38.80894 -36.49960 -34.99208 -33.68587 -32.71228 -31.17161 -30.59265 -27.40518 -26.78545 -25.19223 -23.00720 -22.15662 -21.37734 -19.91904 -19.60059 -17.13396 -16.86259 -16.58737 -16.09793 -15.73001 -14.94697 -14.91290 -14.71433 -14.53001 -13.64223 -13.56337 -13.13367 -13.01556 -12.41519 -12.34660 -12.26795 -12.16802 -11.54615 -11.39294 -11.04849 -10.94727 -10.86439 -10.74641 -10.60918 -10.26825 -10.15262 -9.80567 -9.70529 -9.30568 -8.62242 -8.54325 -8.46857 -7.83683 -6.11776 -4.17543 1.56380 1.70385 2.16880 3.15624 3.27073 3.33422 3.36970 3.58652 4.10552 4.36997 4.77292 5.11933 5.14938 5.18665 5.22508 5.25502 5.27309 5.44636 5.57036 5.66822 5.70766 5.81258 5.91797 5.96413 6.16533 6.30040 6.36720 6.63496 6.67198 6.72449 6.74447 6.76769 6.94784 7.05827 7.29544 7.30289 7.52394 7.81962 8.12572 8.26653 8.83863 9.11406 9.48753 10.95773 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.011241 B = 0.006939 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.265686 B = 4034.474271 C = 5920.748518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.144 4.144 3 C 0.112 3.888 4 O -0.346 6.346 5 C 0.652 3.348 6 O -0.605 6.605 7 N -0.573 5.573 8 C 0.244 3.756 9 C -0.532 4.532 10 H 0.059 0.941 11 C 0.065 3.935 12 N -0.892 5.892 13 Si 0.897 3.103 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.173 3.827 18 C -0.100 4.100 19 C -0.097 4.097 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.127 4.127 23 C -0.098 4.098 24 H 0.097 0.903 25 H 0.105 0.895 26 H 0.120 0.880 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.037 0.963 31 H 0.264 0.736 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.272 4.849 -9.172 10.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.163 4.163 3 C 0.037 3.963 4 O -0.260 6.260 5 C 0.407 3.593 6 O -0.498 6.498 7 N -0.309 5.309 8 C 0.125 3.875 9 C -0.571 4.571 10 H 0.078 0.922 11 C -0.138 4.138 12 N -0.531 5.531 13 Si 0.725 3.275 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.198 1.198 17 C 0.051 3.949 18 C -0.101 4.101 19 C -0.116 4.116 20 C -0.149 4.149 21 C -0.143 4.143 22 C -0.145 4.145 23 C -0.117 4.117 24 H 0.116 0.884 25 H 0.123 0.877 26 H 0.138 0.862 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.212 4.913 -9.287 10.576 hybrid contribution -0.523 -0.174 0.857 1.019 sum 0.689 4.739 -8.430 9.695 Atomic orbital electron populations 1.23786 0.95396 1.02167 1.00477 1.22756 0.95643 0.98153 0.99708 1.21804 0.86979 0.96040 0.91479 1.86438 1.41899 1.39144 1.58474 1.18020 0.80024 0.80994 0.80291 1.90854 1.74361 1.35141 1.49476 1.47101 1.27576 1.17689 1.38572 1.19432 0.97299 0.81361 0.89434 1.21465 1.27725 1.06113 1.01818 0.92236 1.24912 0.95342 0.95010 0.98530 1.69935 1.38389 1.09072 1.35696 0.86512 0.80029 0.78246 0.82754 1.20537 1.21117 1.19846 1.20227 0.88689 0.87919 0.98110 1.20427 0.95515 0.98446 0.95705 1.21235 0.98540 0.98743 0.93050 1.21097 0.93711 1.00698 0.99383 1.21088 0.97658 0.99172 0.96335 1.21105 0.98871 1.00486 0.94082 1.21210 0.92696 0.97590 1.00164 0.88436 0.87698 0.86220 0.91215 0.90921 0.93911 0.94478 0.92640 0.88791 0.89790 0.85543 0.86581 0.86660 0.86330 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 14.31 29.01 0.42 -1.79 16 2 C -0.14 -2.10 9.90 -36.03 -0.36 -2.46 16 3 C 0.11 1.89 5.89 36.00 0.21 2.11 16 4 O -0.35 -7.52 9.03 -40.31 -0.36 -7.88 16 5 C 0.65 14.57 8.39 54.06 0.45 15.02 16 6 O -0.61 -13.51 15.23 -19.29 -0.29 -13.80 16 7 N -0.57 -12.61 2.44 -182.24 -0.44 -13.06 16 8 C 0.24 6.08 5.17 -5.19 -0.03 6.05 16 9 C -0.53 -14.39 9.39 -34.44 -0.32 -14.71 16 10 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -25.24 13.29 55.43 0.74 -24.51 16 13 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 17 C 0.17 3.22 5.53 -5.19 -0.03 3.19 16 18 C -0.10 -1.71 5.46 -104.62 -0.57 -2.28 16 19 C -0.10 -1.58 9.70 -39.58 -0.38 -1.96 16 20 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 21 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 22 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 23 C -0.10 -1.58 9.70 -39.58 -0.38 -1.96 16 24 H 0.10 1.08 7.90 -52.48 -0.41 0.66 16 25 H 0.10 1.08 8.06 -52.49 -0.42 0.65 16 26 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 27 H 0.07 1.14 7.86 -51.93 -0.41 0.73 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.04 1.16 7.37 -51.93 -0.38 0.78 16 30 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.09 1.68 8.02 -51.93 -0.42 1.26 16 33 H 0.08 1.52 7.36 -51.93 -0.38 1.14 16 34 H 0.13 2.11 7.57 -52.48 -0.40 1.71 16 35 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 336.65 15.07 5.07 5.07 Total: -1.00 -30.39 336.65 -7.92 -38.31 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.33 Total: 3.42 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.28 Total: -3.61 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.29 Total: -37.57 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.66 Total: -21.69 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.39 -7.92 -38.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194282776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.198 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds