Wall clock time and date at job start Mon Mar 30 2020 01:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42905 * 109.47132 * 121.18413 * 3 2 1 5 5 C 1.42893 * 114.00132 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47151 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47272 * 54.99951 * 6 5 4 8 8 O 1.42897 * 109.47173 * 294.99863 * 6 5 4 9 9 C 1.52998 * 109.47249 * 174.99790 * 6 5 4 10 10 N 1.46493 * 109.47181 * 185.00284 * 9 6 5 11 11 C 1.38859 * 120.00032 * 180.02562 * 10 9 6 12 12 C 1.39566 * 119.84205 * 179.97438 * 11 10 9 13 13 C 1.36343 * 120.16156 * 180.25274 * 12 11 10 14 14 C 1.40885 * 119.83322 * 359.49976 * 13 12 11 15 15 C 1.41139 * 120.15566 * 180.25308 * 14 13 12 16 16 H 1.08001 * 120.00212 * 205.20861 * 15 14 13 17 17 C 1.39866 * 119.99739 * 25.21466 * 15 14 13 18 18 N 1.30905 * 120.00516 * 17.98538 * 17 15 14 19 19 Si 1.86800 * 119.99703 * 197.98949 * 17 15 14 20 20 H 1.48500 * 109.47111 * 94.50960 * 19 17 15 21 21 H 1.48494 * 109.47184 * 214.50775 * 19 17 15 22 22 H 1.48495 * 109.47132 * 334.50699 * 19 17 15 23 23 C 1.40883 * 119.69120 * 0.51620 * 14 13 12 24 24 C 1.36343 * 119.83748 * 359.73633 * 23 14 13 25 25 H 4.38450 * 5.44455 * 180.02562 * 4 1 2 26 26 H 1.08993 * 109.47559 * 1.18341 * 3 2 1 27 27 H 1.08999 * 109.47244 * 241.17839 * 3 2 1 28 28 H 1.08999 * 109.47539 * 59.99584 * 5 4 3 29 29 H 1.08996 * 109.46906 * 299.99404 * 5 4 3 30 30 H 0.96707 * 113.99706 * 299.99582 * 8 6 5 31 31 H 1.09000 * 109.47001 * 64.99946 * 9 6 5 32 32 H 1.09005 * 109.47018 * 305.00344 * 9 6 5 33 33 H 0.97003 * 120.00477 * 359.97438 * 10 9 6 34 34 H 1.08002 * 119.91996 * 359.97281 * 12 11 10 35 35 H 1.08003 * 120.08186 * 179.74363 * 13 12 11 36 36 H 0.97000 * 120.00294 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.08507 * 179.71467 * 23 14 13 38 38 H 1.07994 * 119.92406 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1220 0.6985 -1.1526 5 6 4.5465 0.7571 -1.2495 6 6 4.9406 1.5222 -2.5145 7 1 4.4647 2.5028 -2.5092 8 8 4.5132 0.7915 -3.6657 9 6 6.4605 1.6933 -2.5543 10 7 6.8281 2.5273 -3.7012 11 6 8.1628 2.8227 -3.9454 12 6 8.5093 3.6172 -5.0393 13 6 9.8181 3.9071 -5.2881 14 6 10.8209 3.4112 -4.4317 15 6 12.1775 3.7115 -4.6799 16 1 12.9516 3.0504 -4.3191 17 6 12.5192 4.8652 -5.3929 18 7 11.6494 5.8344 -5.5256 19 14 14.2169 5.0229 -6.1560 20 1 14.1664 4.5784 -7.5720 21 1 14.6561 6.4403 -6.0975 22 1 15.1778 4.1756 -5.4051 23 6 10.4637 2.6095 -3.3297 24 6 9.1513 2.3234 -3.0960 25 1 -1.0501 0.0000 0.0003 26 1 3.0098 -1.0265 -0.0212 27 1 3.0091 0.4962 0.9003 28 1 4.9494 -0.2546 -1.2968 29 1 4.9493 1.2681 -0.3751 30 1 4.8982 -0.0928 -3.7356 31 1 6.9337 0.7160 -2.6492 32 1 6.7965 2.1719 -1.6344 33 1 6.1393 2.8727 -4.2905 34 1 7.7392 3.9996 -5.6928 35 1 10.0852 4.5186 -6.1374 36 1 11.8862 6.6344 -6.0204 37 1 11.2276 2.2222 -2.6717 38 1 8.8759 1.7087 -2.2518 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251861030.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:56 Heat of formation + Delta-G solvation = -17.632437 kcal Electronic energy + Delta-G solvation = -19599.308176 eV Core-core repulsion = 16408.236713 eV Total energy + Delta-G solvation = -3191.071463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.05695 -37.97053 -36.96060 -34.68286 -33.55493 -32.87961 -30.68341 -29.48222 -28.56034 -27.28745 -25.33398 -23.72180 -22.20855 -20.63754 -20.17244 -18.78913 -17.36528 -17.08343 -16.85272 -16.32426 -16.15546 -15.34313 -15.23671 -14.80054 -14.41227 -13.77846 -13.62532 -13.23815 -12.70734 -12.64018 -12.59052 -12.40579 -11.97611 -11.69132 -11.25495 -11.08600 -11.05774 -10.87254 -10.85289 -10.81216 -10.47586 -10.10941 -9.91096 -9.66473 -9.30495 -9.24184 -8.56052 -7.49577 -6.64907 -6.39467 -4.03822 2.14311 2.45900 2.91119 3.09549 3.15758 3.19281 3.35201 3.43834 4.01782 4.05811 4.31081 4.43166 4.75736 4.76078 4.79148 4.95179 4.98188 5.01923 5.15115 5.35487 5.55609 5.76127 5.82153 6.01772 6.25090 6.30095 6.74363 6.85117 7.05716 7.19578 7.21947 7.30882 7.54964 7.58455 7.66245 7.79303 8.15150 8.33435 8.47669 8.67727 8.79895 9.05931 9.14795 10.37653 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.065496 B = 0.002504 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.405459 B =11178.148568 C =11366.277229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.192 4.192 3 C 0.170 3.830 4 O -0.372 6.372 5 C 0.033 3.967 6 C 0.101 3.899 7 H 0.110 0.890 8 O -0.549 6.549 9 C 0.113 3.887 10 N -0.755 5.755 11 C 0.091 3.909 12 C -0.161 4.161 13 C -0.122 4.122 14 C 0.075 3.925 15 C -0.467 4.467 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.807 5.807 19 Si 0.903 3.097 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.264 1.264 23 C -0.189 4.189 24 C -0.161 4.161 25 H 0.222 0.778 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.374 0.626 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.390 0.610 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.276 0.724 37 H 0.091 0.909 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.290 -9.367 8.456 19.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.192 4.192 3 C 0.095 3.905 4 O -0.292 6.292 5 C -0.044 4.044 6 C 0.041 3.959 7 H 0.128 0.872 8 O -0.353 6.353 9 C -0.013 4.013 10 N -0.392 5.392 11 C -0.005 4.005 12 C -0.183 4.183 13 C -0.142 4.142 14 C 0.072 3.928 15 C -0.498 4.498 16 H 0.091 0.909 17 C -0.141 4.141 18 N -0.435 5.435 19 Si 0.729 3.271 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.188 1.188 23 C -0.210 4.210 24 C -0.183 4.183 25 H 0.239 0.761 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.221 0.779 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.223 0.777 34 H 0.106 0.894 35 H 0.136 0.864 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.703 -8.601 8.281 18.940 hybrid contribution 0.844 -0.278 -0.097 0.894 sum -13.859 -8.879 8.183 18.381 Atomic orbital electron populations 1.24986 0.95912 0.99944 0.98454 1.22547 0.93930 1.01051 1.01710 1.19091 0.84824 0.97137 0.89491 1.88027 1.21044 1.76499 1.43597 1.23248 0.81177 1.00550 0.99441 1.22127 0.93844 0.96253 0.83666 0.87220 1.86634 1.72091 1.31980 1.44636 1.21516 0.92565 0.95762 0.91482 1.43686 1.04975 1.59407 1.31106 1.17338 0.82797 1.02189 0.98220 1.20051 0.96598 1.03326 0.98313 1.20917 0.91015 1.02085 1.00156 1.17506 0.93550 0.91589 0.90164 1.19376 0.92726 1.06315 1.31425 0.90912 1.25805 0.98757 0.94889 0.94648 1.69857 1.36071 1.04790 1.32748 0.86386 0.82684 0.77941 0.80125 1.19604 1.20568 1.18831 1.20548 0.94007 1.07008 0.99411 1.19842 0.93086 1.05320 1.00059 0.76138 0.90813 0.90770 0.92330 0.91670 0.77924 0.93101 0.92548 0.77668 0.89423 0.86396 0.91304 0.89127 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 19.25 29.55 0.57 -0.92 16 2 C -0.19 -1.93 13.73 -37.12 -0.51 -2.44 16 3 C 0.17 1.47 6.41 34.37 0.22 1.69 16 4 O -0.37 -4.20 10.27 -40.08 -0.41 -4.61 16 5 C 0.03 0.30 5.57 37.16 0.21 0.51 16 6 C 0.10 1.15 3.28 -26.73 -0.09 1.06 16 7 H 0.11 1.36 8.14 -51.93 -0.42 0.93 16 8 O -0.55 -6.83 13.25 -40.08 -0.53 -7.36 16 9 C 0.11 1.51 4.53 -4.05 -0.02 1.49 16 10 N -0.76 -13.06 5.65 -58.50 -0.33 -13.39 16 11 C 0.09 1.99 6.67 -83.69 -0.56 1.43 16 12 C -0.16 -3.80 9.82 -39.77 -0.39 -4.19 16 13 C -0.12 -3.21 8.63 -39.26 -0.34 -3.55 16 14 C 0.07 2.03 5.57 -106.79 -0.59 1.43 16 15 C -0.47 -12.72 9.03 -37.87 -0.34 -13.06 16 16 H 0.07 1.91 7.91 -52.49 -0.41 1.50 16 17 C 0.07 1.92 5.12 -17.34 -0.09 1.83 16 18 N -0.81 -21.54 11.01 55.54 0.61 -20.93 16 19 Si 0.90 19.29 29.60 -169.99 -5.03 14.26 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 23 C -0.19 -4.68 9.74 -39.26 -0.38 -5.07 16 24 C -0.16 -3.58 9.23 -39.77 -0.37 -3.95 16 25 H 0.22 1.01 7.80 -54.08 -0.42 0.59 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.37 3.43 9.05 45.56 0.41 3.84 16 31 H 0.05 0.66 7.92 -51.93 -0.41 0.25 16 32 H 0.06 0.75 7.93 -51.93 -0.41 0.34 16 33 H 0.39 6.47 8.47 -40.82 -0.35 6.13 16 34 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.12 3.22 6.21 -52.48 -0.33 2.89 16 36 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 37 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 38 H 0.09 1.66 6.68 -52.49 -0.35 1.31 16 LS Contribution 334.75 15.07 5.04 5.04 Total: -1.00 -31.37 334.75 -7.69 -39.07 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -4.36 Total: 11.64 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -2.68 Total: -23.71 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.28 Total: -34.33 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.94 Total: -11.97 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.37 -7.69 -39.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251861030.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.433 kcal (2) G-P(sol) polarization free energy of solvation -31.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds