Wall clock time and date at job start Mon Mar 30 2020 01:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42905 * 109.47132 * 121.18413 * 3 2 1 5 5 C 1.42893 * 114.00132 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47151 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47272 * 54.99951 * 6 5 4 8 8 O 1.42897 * 109.47173 * 294.99863 * 6 5 4 9 9 C 1.52998 * 109.47249 * 174.99790 * 6 5 4 10 10 N 1.46493 * 109.47181 * 185.00284 * 9 6 5 11 11 C 1.38859 * 120.00032 * 180.02562 * 10 9 6 12 12 C 1.39566 * 119.84205 * 179.97438 * 11 10 9 13 13 C 1.36343 * 120.16156 * 180.25274 * 12 11 10 14 14 C 1.40885 * 119.83322 * 359.49976 * 13 12 11 15 15 C 1.41139 * 120.15566 * 180.25308 * 14 13 12 16 16 H 1.08001 * 120.00212 * 205.20861 * 15 14 13 17 17 C 1.39866 * 119.99739 * 25.21466 * 15 14 13 18 18 N 1.30905 * 120.00516 * 17.98538 * 17 15 14 19 19 Si 1.86800 * 119.99703 * 197.98949 * 17 15 14 20 20 H 1.48500 * 109.47111 * 94.50960 * 19 17 15 21 21 H 1.48494 * 109.47184 * 214.50775 * 19 17 15 22 22 H 1.48495 * 109.47132 * 334.50699 * 19 17 15 23 23 C 1.40883 * 119.69120 * 0.51620 * 14 13 12 24 24 C 1.36343 * 119.83748 * 359.73633 * 23 14 13 25 25 H 4.38450 * 5.44455 * 180.02562 * 4 1 2 26 26 H 1.08993 * 109.47559 * 1.18341 * 3 2 1 27 27 H 1.08999 * 109.47244 * 241.17839 * 3 2 1 28 28 H 1.08999 * 109.47539 * 59.99584 * 5 4 3 29 29 H 1.08996 * 109.46906 * 299.99404 * 5 4 3 30 30 H 0.96707 * 113.99706 * 299.99582 * 8 6 5 31 31 H 1.09000 * 109.47001 * 64.99946 * 9 6 5 32 32 H 1.09005 * 109.47018 * 305.00344 * 9 6 5 33 33 H 0.97003 * 120.00477 * 359.97438 * 10 9 6 34 34 H 1.08002 * 119.91996 * 359.97281 * 12 11 10 35 35 H 1.08003 * 120.08186 * 179.74363 * 13 12 11 36 36 H 0.97000 * 120.00294 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.08507 * 179.71467 * 23 14 13 38 38 H 1.07994 * 119.92406 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1220 0.6985 -1.1526 5 6 4.5465 0.7571 -1.2495 6 6 4.9406 1.5222 -2.5145 7 1 4.4647 2.5028 -2.5092 8 8 4.5132 0.7915 -3.6657 9 6 6.4605 1.6933 -2.5543 10 7 6.8281 2.5273 -3.7012 11 6 8.1628 2.8227 -3.9454 12 6 8.5093 3.6172 -5.0393 13 6 9.8181 3.9071 -5.2881 14 6 10.8209 3.4112 -4.4317 15 6 12.1775 3.7115 -4.6799 16 1 12.9516 3.0504 -4.3191 17 6 12.5192 4.8652 -5.3929 18 7 11.6494 5.8344 -5.5256 19 14 14.2169 5.0229 -6.1560 20 1 14.1664 4.5784 -7.5720 21 1 14.6561 6.4403 -6.0975 22 1 15.1778 4.1756 -5.4051 23 6 10.4637 2.6095 -3.3297 24 6 9.1513 2.3234 -3.0960 25 1 -1.0501 0.0000 0.0003 26 1 3.0098 -1.0265 -0.0212 27 1 3.0091 0.4962 0.9003 28 1 4.9494 -0.2546 -1.2968 29 1 4.9493 1.2681 -0.3751 30 1 4.8982 -0.0928 -3.7356 31 1 6.9337 0.7160 -2.6492 32 1 6.7965 2.1719 -1.6344 33 1 6.1393 2.8727 -4.2905 34 1 7.7392 3.9996 -5.6928 35 1 10.0852 4.5186 -6.1374 36 1 11.8862 6.6344 -6.0204 37 1 11.2276 2.2222 -2.6717 38 1 8.8759 1.7087 -2.2518 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251861030.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:55 Heat of formation + Delta-G solvation = -39.317704 kcal Electronic energy + Delta-G solvation = -19600.248519 eV Core-core repulsion = 16408.236713 eV Total energy + Delta-G solvation = -3192.011807 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.09434 -39.41997 -37.99547 -36.26812 -34.59230 -34.19983 -31.96736 -31.20583 -30.13197 -28.17730 -26.64954 -25.23593 -23.37707 -22.25629 -21.92193 -19.40825 -19.12257 -18.16721 -17.75950 -17.54965 -17.07999 -16.97960 -16.18827 -15.94941 -15.67374 -15.49227 -14.71157 -14.45353 -14.33117 -14.07370 -13.82084 -13.62032 -13.35749 -13.22424 -12.99098 -12.75655 -12.55139 -12.25475 -11.91478 -11.63727 -11.54086 -11.50806 -11.18118 -11.09924 -10.96819 -10.55596 -10.30567 -9.39338 -8.54923 -8.15482 -6.00225 1.10612 1.19648 1.40760 1.47350 1.53696 1.59400 1.81025 2.27928 2.60380 2.85029 3.10808 3.49640 3.56544 3.85739 3.99102 4.01405 4.10752 4.30687 4.42021 4.45954 4.48666 4.52236 4.52830 4.73093 5.01174 5.01930 5.07538 5.18743 5.32110 5.42403 5.74922 5.75934 5.92694 6.11023 6.19809 6.41634 6.58954 6.68120 6.79926 6.89323 7.09305 7.13034 7.28879 8.49140 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.065496 B = 0.002504 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.405459 B =11178.148568 C =11366.277229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.238 4.238 3 C 0.165 3.835 4 O -0.401 6.401 5 C 0.036 3.964 6 C 0.110 3.890 7 H 0.097 0.903 8 O -0.568 6.568 9 C 0.110 3.890 10 N -0.750 5.750 11 C 0.113 3.887 12 C -0.177 4.177 13 C -0.142 4.142 14 C 0.033 3.967 15 C -0.505 4.505 16 H 0.069 0.931 17 C 0.030 3.970 18 N -0.843 5.843 19 Si 0.977 3.023 20 H -0.266 1.266 21 H -0.271 1.271 22 H -0.260 1.260 23 C -0.196 4.196 24 C -0.165 4.165 25 H 0.252 0.748 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.387 0.613 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.394 0.606 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.282 0.718 37 H 0.098 0.902 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.287 -10.629 9.599 20.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.238 4.238 3 C 0.090 3.910 4 O -0.322 6.322 5 C -0.040 4.040 6 C 0.050 3.950 7 H 0.115 0.885 8 O -0.375 6.375 9 C -0.015 4.015 10 N -0.385 5.385 11 C 0.014 3.986 12 C -0.199 4.199 13 C -0.162 4.162 14 C 0.031 3.969 15 C -0.536 4.536 16 H 0.087 0.913 17 C -0.182 4.182 18 N -0.471 5.471 19 Si 0.799 3.201 20 H -0.191 1.191 21 H -0.196 1.196 22 H -0.184 1.184 23 C -0.216 4.216 24 C -0.187 4.187 25 H 0.268 0.732 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.237 0.763 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.228 0.772 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.742 -9.894 9.448 20.856 hybrid contribution 0.898 0.021 -0.365 0.969 sum -14.844 -9.873 9.083 20.008 Atomic orbital electron populations 1.25875 0.96936 0.98672 0.97057 1.23239 0.95166 1.02364 1.03076 1.19312 0.84358 0.98099 0.89207 1.87964 1.22018 1.77206 1.44965 1.23216 0.80648 1.01614 0.98564 1.21957 0.92127 0.96195 0.84684 0.88518 1.86604 1.72504 1.33095 1.45277 1.21734 0.94201 0.95539 0.89995 1.43802 1.03219 1.59250 1.32183 1.17434 0.84792 0.99812 0.96568 1.20237 0.95988 1.04075 0.99593 1.20836 0.92323 1.02957 1.00074 1.17841 0.94021 0.93435 0.91641 1.19595 0.93023 1.07328 1.33663 0.91328 1.26633 1.02893 0.94062 0.94592 1.69924 1.38182 1.05373 1.33640 0.85271 0.77580 0.78199 0.79056 1.19069 1.19621 1.18357 1.20779 0.95559 1.06430 0.98834 1.20133 0.92079 1.05433 1.01057 0.73219 0.89052 0.89157 0.90140 0.90033 0.76344 0.91744 0.91689 0.77180 0.87905 0.88487 0.90798 0.88397 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 19.25 74.32 1.43 -1.13 16 2 C -0.24 -4.45 13.73 31.12 0.43 -4.02 16 3 C 0.17 2.52 6.41 70.18 0.45 2.97 16 4 O -0.40 -8.24 10.27 -144.34 -1.48 -9.72 16 5 C 0.04 0.56 5.57 71.98 0.40 0.96 16 6 C 0.11 2.23 3.28 30.59 0.10 2.33 16 7 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 8 O -0.57 -12.86 13.25 -144.34 -1.91 -14.77 16 9 C 0.11 2.59 4.53 86.38 0.39 2.98 16 10 N -0.75 -24.13 5.65 -339.00 -1.91 -26.04 16 11 C 0.11 4.75 6.67 38.67 0.26 5.01 16 12 C -0.18 -8.36 9.82 22.15 0.22 -8.14 16 13 C -0.14 -7.72 8.63 22.48 0.19 -7.53 16 14 C 0.03 1.87 5.57 -21.27 -0.12 1.75 16 15 C -0.50 -28.43 9.03 23.38 0.21 -28.22 16 16 H 0.07 3.74 7.91 -2.91 -0.02 3.72 16 17 C 0.03 1.59 5.12 85.23 0.44 2.03 16 18 N -0.84 -46.51 11.01 21.82 0.24 -46.27 16 19 Si 0.98 40.37 29.60 68.60 2.03 42.40 16 20 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 21 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 22 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 23 C -0.20 -9.68 9.74 22.48 0.22 -9.46 16 24 C -0.16 -7.02 9.23 22.15 0.20 -6.82 16 25 H 0.25 1.67 7.80 -4.41 -0.03 1.64 16 26 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 27 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.39 6.10 9.05 -74.05 -0.67 5.43 16 31 H 0.06 1.40 7.92 -2.39 -0.02 1.38 16 32 H 0.07 1.48 7.93 -2.38 -0.02 1.46 16 33 H 0.39 12.28 8.47 -92.71 -0.79 11.49 16 34 H 0.10 4.42 8.06 -2.91 -0.02 4.39 16 35 H 0.10 5.58 6.21 -2.91 -0.02 5.56 16 36 H 0.28 14.16 8.30 -92.71 -0.77 13.39 16 37 H 0.10 4.56 8.06 -2.91 -0.02 4.53 16 38 H 0.12 4.24 6.68 -2.91 -0.02 4.22 16 Total: -1.00 -69.51 334.75 1.40 -68.11 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: -0.38 Total: 33.60 kcal Atomic # 6 Polarization: -52.12 SS G_CDS: 4.82 Total: -47.30 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -1.67 Total: -72.31 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -3.39 Total: -24.49 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -69.51 1.40 -68.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251861030.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.789 kcal (2) G-P(sol) polarization free energy of solvation -69.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds