Wall clock time and date at job start Mon Mar 30 2020 01:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42907 * 109.46836 * 149.46012 * 3 2 1 5 5 C 1.42899 * 113.99627 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47036 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.46873 * 54.99758 * 6 5 4 8 8 O 1.42904 * 109.46869 * 294.99972 * 6 5 4 9 9 C 1.53000 * 109.47207 * 175.00173 * 6 5 4 10 10 N 1.46504 * 109.46885 * 184.99768 * 9 6 5 11 11 C 1.38731 * 119.99745 * 179.97438 * 10 9 6 12 12 C 1.38749 * 120.29373 * 0.02562 * 11 10 9 13 13 C 1.38169 * 120.02439 * 179.97438 * 12 11 10 14 14 C 1.38898 * 120.62601 * 0.02562 * 13 12 11 15 15 C 1.36454 * 120.59844 * 359.97438 * 14 13 12 16 16 C 1.40729 * 119.94578 * 359.72255 * 15 14 13 17 17 C 1.41050 * 120.30116 * 180.27466 * 16 15 14 18 18 H 1.07998 * 120.00160 * 205.68019 * 17 16 15 19 19 C 1.39925 * 120.00155 * 25.69183 * 17 16 15 20 20 N 1.30878 * 120.00163 * 15.14512 * 19 17 16 21 21 Si 1.86806 * 120.00054 * 195.15308 * 19 17 16 22 22 H 1.48493 * 109.46954 * 89.99262 * 21 19 17 23 23 H 1.48497 * 109.47125 * 209.99678 * 21 19 17 24 24 H 1.48498 * 109.46759 * 329.99277 * 21 19 17 25 25 H 4.38444 * 5.44360 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.47526 * 29.45874 * 3 2 1 27 27 H 1.08998 * 109.46937 * 269.45908 * 3 2 1 28 28 H 1.09003 * 109.47393 * 299.99841 * 5 4 3 29 29 H 1.08996 * 109.47594 * 60.00054 * 5 4 3 30 30 H 0.96702 * 113.99693 * 300.00129 * 8 6 5 31 31 H 1.09002 * 109.46713 * 304.99157 * 9 6 5 32 32 H 1.09001 * 109.47366 * 64.99515 * 9 6 5 33 33 H 0.96999 * 120.00011 * 359.97438 * 10 9 6 34 34 H 1.07995 * 119.98830 * 0.02562 * 12 11 10 35 35 H 1.07999 * 119.68989 * 179.97438 * 13 12 11 36 36 H 1.08001 * 119.70272 * 179.97438 * 14 13 12 37 37 H 1.08002 * 120.02542 * 180.02562 * 15 14 13 38 38 H 0.97005 * 119.99970 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.1613 -0.6846 5 6 4.5463 1.2594 -0.7415 6 6 4.9403 2.5331 -1.4921 7 1 4.4637 3.3937 -1.0226 8 8 4.5134 2.4356 -2.8525 9 6 6.4600 2.7032 -1.4455 10 7 6.8274 3.9816 -2.0596 11 6 8.1606 4.3582 -2.1329 12 6 9.1510 3.5285 -1.6271 13 6 10.4772 3.9088 -1.7036 14 6 10.8338 5.1194 -2.2838 15 6 9.8807 5.9549 -2.7893 16 6 8.5230 5.5891 -2.7301 17 6 7.5321 6.4444 -3.2556 18 1 6.5234 6.4020 -2.8719 19 6 7.8557 7.3476 -4.2740 20 7 8.9721 7.2075 -4.9426 21 14 6.6945 8.7537 -4.6794 22 1 7.0460 9.9387 -3.8565 23 1 6.8163 9.0968 -6.1190 24 1 5.2982 8.3429 -4.3848 25 1 -1.0501 -0.0004 0.0000 26 1 3.0098 -0.8939 -0.5054 27 1 3.0093 0.0105 1.0276 28 1 4.9487 1.2956 0.2709 29 1 4.9499 0.3910 -1.2620 30 1 4.8989 1.6902 -3.3331 31 1 6.7955 2.6887 -0.4085 32 1 6.9339 1.8880 -1.9922 33 1 6.1384 4.5647 -2.4149 34 1 8.8854 2.5848 -1.1742 35 1 11.2437 3.2591 -1.3078 36 1 11.8749 5.4020 -2.3353 37 1 10.1684 6.8938 -3.2388 38 1 9.1967 7.8339 -5.6484 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251867341.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:58 Heat of formation + Delta-G solvation = -17.281208 kcal Electronic energy + Delta-G solvation = -20127.256058 eV Core-core repulsion = 16936.199825 eV Total energy + Delta-G solvation = -3191.056233 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.94560 -37.92425 -36.82035 -34.08806 -33.48088 -33.43437 -30.65415 -29.45794 -28.13314 -26.93755 -25.18979 -24.31162 -22.04605 -20.58209 -19.85438 -18.71814 -17.23879 -17.09749 -16.74244 -16.21475 -16.13678 -15.22337 -14.94595 -14.80070 -14.38016 -13.87910 -13.51152 -13.14423 -12.60759 -12.52862 -12.50387 -12.28135 -12.18986 -11.53346 -11.19939 -11.03055 -10.97667 -10.81537 -10.79483 -10.70173 -10.35847 -9.98885 -9.82676 -9.50429 -9.39581 -9.08208 -8.86369 -7.30597 -6.64770 -6.23646 -4.08555 2.21352 2.52175 2.88206 3.15185 3.18800 3.24010 3.31211 3.53634 4.04306 4.11846 4.45162 4.58506 4.78166 4.85776 4.89460 5.05859 5.09353 5.13493 5.25167 5.47030 5.61831 5.78995 5.89606 6.15597 6.27338 6.49044 6.64280 6.84232 7.07956 7.24260 7.28338 7.36457 7.52870 7.72791 7.78271 7.88479 8.24548 8.27432 8.49871 8.78940 8.91359 9.05143 9.18471 10.36307 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018162 B = 0.003892 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.290417 B = 7192.240107 C = 8542.450012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.192 4.192 3 C 0.170 3.830 4 O -0.371 6.371 5 C 0.034 3.966 6 C 0.101 3.899 7 H 0.110 0.890 8 O -0.546 6.546 9 C 0.111 3.889 10 N -0.742 5.742 11 C 0.112 3.888 12 C -0.178 4.178 13 C -0.200 4.200 14 C -0.145 4.145 15 C -0.140 4.140 16 C 0.067 3.933 17 C -0.462 4.462 18 H 0.071 0.929 19 C 0.075 3.925 20 N -0.804 5.804 21 Si 0.904 3.096 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.264 1.264 25 H 0.222 0.778 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.373 0.627 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.400 0.600 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.119 0.881 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.380 -11.609 7.220 16.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.192 4.192 3 C 0.094 3.906 4 O -0.291 6.291 5 C -0.043 4.043 6 C 0.041 3.959 7 H 0.128 0.872 8 O -0.350 6.350 9 C -0.015 4.015 10 N -0.378 5.378 11 C 0.013 3.987 12 C -0.201 4.201 13 C -0.220 4.220 14 C -0.165 4.165 15 C -0.161 4.161 16 C 0.063 3.937 17 C -0.493 4.493 18 H 0.089 0.911 19 C -0.140 4.140 20 N -0.431 5.431 21 Si 0.730 3.270 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.188 1.188 25 H 0.238 0.762 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.220 0.780 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.236 0.764 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.137 0.863 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.698 -11.000 7.180 16.328 hybrid contribution -0.324 0.033 -0.367 0.491 sum -10.022 -10.967 6.814 16.344 Atomic orbital electron populations 1.24978 0.95904 0.98456 1.00037 1.22560 0.93946 1.01698 1.00976 1.19088 0.84818 0.89433 0.97224 1.88044 1.21103 1.42794 1.77129 1.23262 0.81109 0.99145 1.00830 1.22123 0.93878 0.96949 0.82967 0.87198 1.86667 1.71899 1.53812 1.22632 1.21534 0.92680 0.89161 0.98158 1.43758 1.05527 1.19937 1.68623 1.17891 0.83043 0.94394 1.03334 1.20002 0.92876 0.99081 1.08181 1.20124 0.94379 0.98632 1.08826 1.20291 0.97390 0.95986 1.02818 1.20856 0.92248 1.00018 1.02968 1.17244 0.93394 0.89852 0.93260 1.19156 0.96697 1.16745 1.16731 0.91090 1.25757 0.95597 0.97846 0.94837 1.69837 1.22908 1.33325 1.17004 0.86376 0.81310 0.81495 0.77863 1.19573 1.20535 1.18809 0.76152 0.90862 0.90839 0.91782 0.92393 0.78032 0.92751 0.93263 0.76363 0.89638 0.89833 0.89903 0.86303 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 19.25 29.55 0.57 -1.06 16 2 C -0.19 -2.08 13.73 -37.12 -0.51 -2.59 16 3 C 0.17 1.61 6.41 34.37 0.22 1.83 16 4 O -0.37 -4.61 10.27 -40.08 -0.41 -5.02 16 5 C 0.03 0.35 5.57 37.16 0.21 0.56 16 6 C 0.10 1.33 3.28 -26.73 -0.09 1.25 16 7 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 8 O -0.55 -8.07 13.25 -40.08 -0.53 -8.60 16 9 C 0.11 1.68 4.54 -4.04 -0.02 1.66 16 10 N -0.74 -14.99 5.58 -58.20 -0.32 -15.32 16 11 C 0.11 2.68 6.68 -83.29 -0.56 2.13 16 12 C -0.18 -4.00 9.30 -39.42 -0.37 -4.37 16 13 C -0.20 -4.56 10.04 -39.36 -0.40 -4.95 16 14 C -0.15 -3.52 9.96 -39.98 -0.40 -3.92 16 15 C -0.14 -3.72 8.63 -39.28 -0.34 -4.06 16 16 C 0.07 1.79 5.58 -106.63 -0.60 1.19 16 17 C -0.46 -12.24 8.51 -37.88 -0.32 -12.56 16 18 H 0.07 1.81 6.68 -52.49 -0.35 1.46 16 19 C 0.08 1.93 5.19 -17.33 -0.09 1.84 16 20 N -0.80 -21.32 10.88 55.55 0.60 -20.71 16 21 Si 0.90 19.32 29.59 -169.99 -5.03 14.29 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 25 H 0.22 1.17 7.80 -54.09 -0.42 0.75 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.37 4.23 9.05 45.56 0.41 4.64 16 31 H 0.05 0.78 7.95 -51.93 -0.41 0.37 16 32 H 0.05 0.72 7.94 -51.93 -0.41 0.30 16 33 H 0.40 8.42 6.70 -40.82 -0.27 8.14 16 34 H 0.09 1.68 6.73 -52.49 -0.35 1.32 16 35 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.08 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.12 3.27 6.14 -52.49 -0.32 2.95 16 38 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 LS Contribution 331.66 15.07 5.00 5.00 Total: -1.00 -31.23 331.66 -7.61 -38.84 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -4.23 Total: 14.60 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -2.68 Total: -23.06 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.28 Total: -36.03 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.94 Total: -13.63 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.23 -7.61 -38.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251867341.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.555 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds